3300026707: Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN626 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026707
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054780 | Ga0208074
• Sample Name: Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN626 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 8763736
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
Not Available	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Gorham, Kansas, USA
• Coordinates
  • Lat. (^o): 39.05
  • Long. (^o): -99.1
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001115	Metagenome / Metatranscriptome	774	Y
F008894	Metagenome / Metatranscriptome	326	Y
F015021	Metagenome / Metatranscriptome	258	Y
F019681	Metagenome / Metatranscriptome	228	Y
F021935	Metagenome / Metatranscriptome	216	Y
F029894	Metagenome / Metatranscriptome	187	Y
F037928	Metagenome / Metatranscriptome	167	Y
F047985	Metagenome / Metatranscriptome	149	Y
F050205	Metagenome	145	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208074_100017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1875
Ga0208074_100300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1039
Ga0208074_100491	Not Available	892
Ga0208074_100853	Not Available	748
Ga0208074_101265	Not Available	650
Ga0208074_101361	Not Available	632
Ga0208074_101789	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	568
Ga0208074_102061	Not Available	536
Ga0208074_102085	Not Available	534

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208074_100017	Ga0208074_1000172	F037928	TWLSVVELEGLDPVAGDERYLVFLRNWAGWTLAGATSPGPDGSAQVRSAAEPRPPTIYEVVVTRAVDDATSIPHGRPVLQWFDASLAPPKARRFDFARGA
Ga0208074_100300	Ga0208074_1003002	F008894	MSEGSGAKEVPPPFTDEERGRGHELLGLGEPERQAVLTWVGENLTQVRRSVYDQRLLHWSLGIGVVVGLAAHVGGYTLTSWVTTEPLGLFADLLYALGYALWTGVVVVLFVQVFPEAKRRQFKQALDAYEAAQRDDARSARDDGWGDDAAPTAT
Ga0208074_100491	Ga0208074_1004911	F047985	VRSRVGSMDGAARIPVAAPLDRGQVRFRTLLFRYLAVGFILLAIVVVANPAAPDAAADPDPWDYQREQVDVEGRGVLNAYAGAAIRTTAWLAKSSIERQRDMLRLSLFDMLVGAGAADSVGGWRTRNADVLEAGTKAALLGLIAWGVVRRPAW
Ga0208074_100853	Ga0208074_1008531	F050205	VVADIAKLSVGREEYYTRELATDHEQYLSGHGESPGRWYGQGAASL
Ga0208074_101265	Ga0208074_1012652	F029894	MMRGQVVPEEARAWTAGLLLATDYFAHARREAVAKASAAIRGRLHRARRASSEDRETSR
Ga0208074_101361	Ga0208074_1013612	F015021	LATQYPDDDLPREPDPPERATDVDKQDPATPDEIPEPEASEVESARLLANQARPELGAAGFSDQRIDELASEFIARDIGEGLEEFLRWAQAEGQLPQGSGDIF
Ga0208074_101789	Ga0208074_1017892	F001115	MKNELQNLTEDISRLYEEITQKTESLGQIDSITRLYDELQTQLQGISTEEVDLLQTQIKSTLEQMVGISKSLGVIKALKVTLNGNDEVLDSVKKAQTNTTARRSLEDR
Ga0208074_102061	Ga0208074_1020612	F019681	MADVGTTSEGRPWSIAGLVLAGLGLAMFPIGGLVGIVCGGIARSKGDESLGLVAIVAGVISFFASFGVAFLVLG
Ga0208074_102085	Ga0208074_1020851	F021935	MPASHDLLTPTEHEAAQLLVTLAWRLDGGHLVNADQMLARLCGIPTNDVAMASIVLLREVAHSVAPALQRPPIEVLDHLRRWLASRSS