3300026701: Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN407 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026701
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054522 | Ga0208577
• Sample Name: Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN407 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15233200
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Willamette National Forest, Oregon, USA
• Coordinates
  • Lat. (^o): 44.20517707
  • Long. (^o): -122.1284473
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000268	Metagenome / Metatranscriptome	1411	Y
F004141	Metagenome / Metatranscriptome	451	Y
F007896	Metagenome / Metatranscriptome	343	Y
F013334	Metagenome / Metatranscriptome	272	Y
F028269	Metagenome / Metatranscriptome	192	Y
F031228	Metagenome / Metatranscriptome	183	Y
F050416	Metagenome / Metatranscriptome	145	Y
F064906	Metagenome / Metatranscriptome	128	Y
F072806	Metagenome / Metatranscriptome	121	Y
F092431	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208577_100020	All Organisms → cellular organisms → Bacteria	2108
Ga0208577_100428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	867
Ga0208577_100457	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	841
Ga0208577_100551	All Organisms → cellular organisms → Bacteria	792
Ga0208577_100693	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	736
Ga0208577_100899	Not Available	683
Ga0208577_101273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	619
Ga0208577_101648	Not Available	577
Ga0208577_101794	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	567
Ga0208577_102261	All Organisms → cellular organisms → Bacteria → Terrabacteria group	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208577_100020	Ga0208577_1000202	F013334	MGRNKVKPEQASKVLMRMPTLRSFGEGRTCGEAIDTRTHAIRRGSGYGTSVGWFVVTGGDPSRTRVAASASH
Ga0208577_100428	Ga0208577_1004282	F031228	MDHREIAVRVPVMNEVQFLFASEPCKPLKPRSLYVVFLVEKDVRVERRRTCNYLNHEEINGQYEVCTSSYQKHRNEEEGCIVAFVTAVRP
Ga0208577_100457	Ga0208577_1004572	F072806	MGRTEIPNLKNDYERACGWYGHFNKSEMALFSECTDRYAQKLLDTADIVREAILRQLT
Ga0208577_100551	Ga0208577_1005511	F000268	VSYSFVSKASGRLGGPIRFEFYRDSTTRPKTDIESFTVSMRTADDRWKAMWSILSGRGLTQPIDYGVTPPGFTTMIQPQKLMPGRVYAGFASDGHGGTSGVTFGFDKNGRMTFPDSFDR
Ga0208577_100693	Ga0208577_1006932	F092431	MAETHYRQQQITAALTQVRIQMQNEASRLRRILDVKQHILASIKNHPWEWTSCAAIFGWILAGLPARKKKIFIHSSSQKPPNARVNGPVGKVWKEVWKISKPLIAAYLAKLVADQTSVPKTEVA
Ga0208577_100899	Ga0208577_1008991	F050416	SKQWATQILYFSSHRFKELERQLADPECRAPAMELASYFNNTGWASLARVRYNDDQLTDALTELGGDSNAARCKAAYLLLRHSLQVLSQRRPCFALANDHADLGPLDTFRQELLQVARLDPTILVPGYLQAGQAGFLSLSQLVPSAFEQSPEDSLENVFKIILRARNAAMKQRVAVPGLDNLPELFSRLSFRVKSGRLRQKGRHGSILTFKINWSSHDGGGFQRESI
Ga0208577_101273	Ga0208577_1012731	F064906	GYTRALIELGYRDAMEARSALLAFMSGEKLPQVMTAAGVAQAT
Ga0208577_101603	Ga0208577_1016032	F000042	VVKINRGGTHATEYVKRIDRTPIRTTPDRKLALVMGRFTAEDAVKSLQNSRCSPELVSVQDGA
Ga0208577_101648	Ga0208577_1016482	F004141	MTMISEAAMLSELAVEFPGYEFSTQRTWEGVSLIAVRQGGSDRSGLYVVITPDCDEMRRTLLEDENSGR
Ga0208577_101794	Ga0208577_1017941	F007896	RQSYATDFTLRFVERANYVSPKMTTRSRIRVFPLADYESTTISKKALCQLQDREAQERGARDLQEPAP
Ga0208577_102261	Ga0208577_1022612	F028269	MSDPRSPRPGRGSRPSPASLGVVRVDADFQDEYPSGDTTCTEAYASLCRTGEALLGE