3300026698: Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN411 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026698
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054414 | Ga0208843
• Sample Name: Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN411 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13461771
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Willamette National Forest, Oregon, USA
• Coordinates
  • Lat. (^o): 44.20517707
  • Long. (^o): -122.1284473
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003101	Metagenome / Metatranscriptome	507	Y
F003395	Metagenome / Metatranscriptome	489	Y
F041900	Metagenome / Metatranscriptome	159	Y
F055029	Metagenome / Metatranscriptome	139	Y
F081678	Metagenome / Metatranscriptome	114	Y
F084660	Metagenome / Metatranscriptome	112	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208843_100336	Not Available	756
Ga0208843_100457	All Organisms → cellular organisms → Bacteria	688
Ga0208843_100618	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	631
Ga0208843_100758	Not Available	590
Ga0208843_100906	Not Available	564
Ga0208843_101120	Not Available	533

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208843_100336	Ga0208843_1003361	F003101	MENRIQVANYAATLTRELCRMCRKVELDDLAYLLEVAAAEASKEPLAKRTNGSARAAIHQLSAQSS
Ga0208843_100457	Ga0208843_1004571	F055029	GNWSLMLINHDLNAAHQVHLVIDDAKHMSHPFVGSVALVQYCNTPAEDKNITIAATPDGMYTLPAGSITVVRGKLR
Ga0208843_100618	Ga0208843_1006182	F081678	RWLNTACQERDSSLEGLKTDFLLDPLRSDRRFAELVRKVGLPQ
Ga0208843_100758	Ga0208843_1007581	F041900	VLEVVVRPLARQLRTPEGRRYFRIGAQLINHPRFMTDAGGAVTVNTSIARCAAYLLPSLDHLPTPVVAERTSQVTGFIIRACGDQARLMDSDPPARPVLSVEDFTVNLVDTIMAILQAPTSVASAPAAPGPDAAGG
Ga0208843_100906	Ga0208843_1009061	F003395	CSLKAIPTSGGVTASTEMLAAKRHARVLAPVIVGKMIIANQQMAYAA
Ga0208843_101120	Ga0208843_1011201	F084660	QNEADLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR