3300026694: Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN611 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026694
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054706 | Ga0208346
• Sample Name: Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN611 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 11306153
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
Not Available	4
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Gorham, Kansas, USA
• Coordinates
  • Lat. (^o): 39.05
  • Long. (^o): -99.1
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005411	Metagenome / Metatranscriptome	401	Y
F007321	Metagenome / Metatranscriptome	353	Y
F010980	Metagenome / Metatranscriptome	296	Y
F031594	Metagenome	182	Y
F052282	Metagenome / Metatranscriptome	143	Y
F075178	Metagenome / Metatranscriptome	119	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208346_100002	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3264
Ga0208346_100036	Not Available	1604
Ga0208346_100344	Not Available	848
Ga0208346_100681	All Organisms → cellular organisms → Bacteria	687
Ga0208346_101069	Not Available	589
Ga0208346_101193	Not Available	565

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208346_100002	Ga0208346_10000211	F075178	MSDYIIGPGVAQAIADAGDEPRSDEQYVILEEGHKVSQTFARDAIYYWLQEDNAVRRSPF
Ga0208346_100036	Ga0208346_1000364	F031594	MSVRPVTFQPNGDIDVVYDEGGHSGTIPAAEVVWTTNMDGSHNHNFIVLNCPDGCGATSTHPVGGGAAPVEVQQMFVHKTEAEGCACGNVEAGTNAIPESHVRLNCSRMDGPERWQATETPEVVAHG
Ga0208346_100344	Ga0208346_1003441	F005411	EWKTGLDARNMVSGADPAIGPDLPERVKLIRAALPDADRARFEQDLDQALDMARSTRDLRPLGHVVEGWLRVVFVRQHGGGRWAATEARLRRGVEPAWESEPLEVEDAISRYLSSAVPGA
Ga0208346_100681	Ga0208346_1006811	F052282	PRPSSTMLSLSARPASIHTRWIYTRLKSLSPVRAFFRRRTFVQAELPLSYRDHPVQRSLAPQRVMLSHRIIAYYDLIRASLPLPPVYLLSSGSLPYGIVWAGEEKVPNLSCLSFPIVPSSVPRRLGDFFRPLLHRLLWPSPSSHKVGARLSTLGRFLRGSCNEAAKFTSCYGPMRLLAPLRLGRLLSSFHLLGHPWGVSSITTRANNQFPWPDLHRLDKQPYRLQTKS
Ga0208346_101069	Ga0208346_1010691	F010980	VPRYLLINETEPRWRLHDTVDSADLEKSLARVIQNGAITYTLASRNEGETFQSLTINGKDLVTYVITEEDDPDPAKTRSRYEAAGFWQP
Ga0208346_101193	Ga0208346_1011931	F007321	MRAQTVQTWIARHILVRRRLEHVCTSYLLFLMVVTRKHTLAEAARFAGLHTSQF