3300026688: Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN589 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026688
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054363 | Ga0208071
• Sample Name: Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN589 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9830828
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Manhattan, Kansas, USA
• Coordinates
  • Lat. (^o): 39.070856
  • Long. (^o): -96.582821
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000268	Metagenome / Metatranscriptome	1411	Y
F000527	Metagenome / Metatranscriptome	1048	Y
F000707	Metagenome / Metatranscriptome	926	N
F001434	Metagenome	695	Y
F001680	Metagenome / Metatranscriptome	653	Y
F022723	Metagenome / Metatranscriptome	213	Y
F027142	Metagenome	195	Y
F035042	Metagenome / Metatranscriptome	173	Y
F053504	Metagenome / Metatranscriptome	141	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208071_100124	All Organisms → cellular organisms → Bacteria	951
Ga0208071_100235	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	787
Ga0208071_100266	All Organisms → cellular organisms → Bacteria	759
Ga0208071_100274	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	754
Ga0208071_100399	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	685
Ga0208071_100655	All Organisms → cellular organisms → Bacteria	599
Ga0208071_100844	All Organisms → cellular organisms → Bacteria	560
Ga0208071_100946	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	545
Ga0208071_100979	All Organisms → cellular organisms → Bacteria	539

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208071_100124	Ga0208071_1001242	F000268	MLVRVFAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTRPKTDIESFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGRMIFPDSFDE
Ga0208071_100235	Ga0208071_1002351	F001680	MQSNSCYMLWASTSAIAASVVLLASCSVFQPVIDVVPVGSLQQGVVFYLGDTFRQRQEFTVTAVTVLEEQSDSSTRAIWILEGGQERGQRLRYITYGAKYPDLKESQRPLRLRRGKRYEVFVYTSTGAKRVDVFAFRVDEN
Ga0208071_100266	Ga0208071_1002662	F000527	LPDDATLSRLLIGTWHGHRHDTQYRADGTWVMDPPDEGDNTHGKWRIEHGRLIETWRFSDESSGSTSVEEIMELTENIFKSRIISQEGPGRPEGLVLPSEIFTVTRVTTKK
Ga0208071_100274	Ga0208071_1002741	F027142	MSKENSQPESPEKKKQEVEVRDLKPKIDPKGGTTDAKKGDKRASGRTGEADFMEGLK
Ga0208071_100399	Ga0208071_1003991	F001434	YQTITIVTHSKGGLLAMRTLLNRAKDFPNKQPYKIHRIVMFTPLTENVSLAQQPEFVKLLGKQSADIAQMQANTYSELGKVKEDLKALLDPQDPLAAARTEAFIKDVAEHLYIINAERDEIVDVGPNGEKIVSEALRRLSQLPTLGPPRLVTLRYSDIGGTEEDARETKSGVENPAYAHGIVVKMGAQQQVSFFDHFEELLFDRIGTPPRNSAANVEQIRQTTNDRID
Ga0208071_100655	Ga0208071_1006552	F035042	MKNKPDAAASSLNETMAARIEIKELGDPAQQKKITDAVEALDGVIET
Ga0208071_100844	Ga0208071_1008441	F053504	MHVIQFREIMRDAEVAYAIHPIVLKYLLTVEETTKALLACGVSRAANVAQISTGRFLINKYATNRPTKQRDLFQAT
Ga0208071_100946	Ga0208071_1009461	F022723	AGTGADRSGEDLRARKAVVIDSENISRAGGGYNTSALRVAETSPDANELWQKILAKIPSQKAFVRNSAATAHVLDIEGRNFQLGFAPGDKAMMDILGTQANRKFLETLLHEITGTDWTVKLTVKEELPSKQALASEGSRPENFKEDPLIQEAIGLFNAQVVQEG
Ga0208071_100979	Ga0208071_1009791	F000707	MQTKLPINGTIQHPDLAEALRGESGTFFCQQGGQGYILTAAEGFSIKSLRPVGRKIVEANVVMQTTPEPWAITKISEDVLEFSSMPQSPRQQRAA