Metagenome / Metatranscriptome Family F035042

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F035042
Family Type	Metagenome / Metatranscriptome
Number of Sequences	173
Average Sequence Length	54 residues
Representative Sequence	MKNKPDPADSSLSETMAARIEINELGDPAHQKKITDAVEALDGVIETKIAKG
Number of Associated Samples	139
Number of Associated Scaffolds	173

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	12.79 %
% of genes near scaffold ends (potentially truncated)	93.06 %
% of genes from short scaffolds (< 2000 bps)	93.06 %
Associated GOLD sequencing projects	128
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.225 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (12.717 % of family members)
Environment Ontology (ENVO)	Unclassified (38.150 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.399 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.00% β-sheet: 0.00% Coil/Unstructured: 80.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 173 Family Scaffolds
PF00999	Na_H_Exchanger	27.75
PF07883	Cupin_2	21.97
PF13193	AMP-binding_C	3.47
PF13490	zf-HC2	1.73
PF07992	Pyr_redox_2	1.16
PF08240	ADH_N	1.16
PF00561	Abhydrolase_1	0.58
PF12833	HTH_18	0.58
PF13977	TetR_C_6	0.58
PF12704	MacB_PCD	0.58
PF13964	Kelch_6	0.58
PF12681	Glyoxalase_2	0.58
PF01894	UPF0047	0.58
PF03243	MerB	0.58
PF00211	Guanylate_cyc	0.58
PF02870	Methyltransf_1N	0.58
PF03167	UDG	0.58
PF12680	SnoaL_2	0.58
PF08281	Sigma70_r4_2	0.58
PF02852	Pyr_redox_dim	0.58
PF13847	Methyltransf_31	0.58
PF13418	Kelch_4	0.58
PF00501	AMP-binding	0.58
PF14234	DUF4336	0.58
PF00106	adh_short	0.58

COG ID	Name	Functional Category	% Frequency in 173 Family Scaffolds
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	27.75
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	27.75
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	27.75
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	27.75
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	27.75
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	0.58
COG0432	Thiamin phosphate synthase YjbQ, UPF0047 family	Coenzyme transport and metabolism [H]	0.58
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.58
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.58
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.58
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.58

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.80 %
Unclassified	root	N/A	42.20 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.80 %
Unclassified	root	N/A	42.20 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.23 %
Unclassified	root	N/A	42.20 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.20 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	24.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.47 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.16 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	0.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.20 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	24.28 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.16 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.16 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	0.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.20 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	20.23 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.16 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	1.16 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.16 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.58 %
Nitrosopumilales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	0.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.20 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	20.23 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1.16 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.16 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.58 %
Nitrosopumilaceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	0.58 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.20 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	20.23 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1.16 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.16 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.58 %
Nitrosopumilaceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	0.58 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.20 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	20.23 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1.16 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.16 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	0.58 %
Nitrosopumilaceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	0.58 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.20 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	20.23 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1.16 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.16 %
unclassified Candidatus Udaeobacter	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter	0.58 %
Nitrosopumilaceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	0.58 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.20 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	20.23 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1.16 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.16 %
Candidatus Udaeobacter sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	0.58 %
Nitrosopumilaceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	0.58 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.58 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16516824	All Organisms → cellular organisms → Bacteria	1617	Open in IMG/M
2088090014\|GPIPI_16701973	All Organisms → cellular organisms → Bacteria	2043	Open in IMG/M
2088090014\|GPIPI_17165858	All Organisms → cellular organisms → Bacteria → Proteobacteria	1924	Open in IMG/M
2088090014\|GPIPI_17456044	All Organisms → cellular organisms → Bacteria → Acidobacteria	2637	Open in IMG/M
2170459005\|F1BAP7Q02GIJW1	Not Available	512	Open in IMG/M
2170459022\|GZEQPF101BGT5Q	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	504	Open in IMG/M
2189573003\|GZIR7W402IR3GH	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	539	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100520640	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	559	Open in IMG/M
3300000559\|F14TC_100523106	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1417	Open in IMG/M
3300000559\|F14TC_100909837	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	537	Open in IMG/M
3300000559\|F14TC_100912648	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	604	Open in IMG/M
3300000559\|F14TC_101795928	All Organisms → cellular organisms → Bacteria	1216	Open in IMG/M
3300000787\|JGI11643J11755_11250552	Not Available	549	Open in IMG/M
3300000890\|JGI11643J12802_12222169	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	928	Open in IMG/M
3300000955\|JGI1027J12803_105366419	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	604	Open in IMG/M
3300000956\|JGI10216J12902_105835837	All Organisms → cellular organisms → Bacteria → Acidobacteria	674	Open in IMG/M
3300000956\|JGI10216J12902_111991645	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1755	Open in IMG/M
3300000956\|JGI10216J12902_118024597	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300000956\|JGI10216J12902_124832521	Not Available	904	Open in IMG/M
3300001139\|JGI10220J13317_10462473	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300001990\|JGI24737J22298_10243873	Not Available	531	Open in IMG/M
3300004114\|Ga0062593_103113865	Not Available	531	Open in IMG/M
3300004153\|Ga0063455_101499415	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300004157\|Ga0062590_100439188	Not Available	1087	Open in IMG/M
3300004479\|Ga0062595_102652770	Not Available	504	Open in IMG/M
3300004643\|Ga0062591_102598160	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300005093\|Ga0062594_100618060	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300005093\|Ga0062594_101968198	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300005179\|Ga0066684_10868799	Not Available	591	Open in IMG/M
3300005180\|Ga0066685_11042392	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	538	Open in IMG/M
3300005186\|Ga0066676_10563277	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	772	Open in IMG/M
3300005266\|Ga0065702_100555	Not Available	778	Open in IMG/M
3300005294\|Ga0065705_10153048	All Organisms → cellular organisms → Bacteria	1913	Open in IMG/M
3300005328\|Ga0070676_11603319	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300005330\|Ga0070690_100730703	Not Available	763	Open in IMG/M
3300005331\|Ga0070670_100424386	All Organisms → cellular organisms → Bacteria → Proteobacteria	1176	Open in IMG/M
3300005332\|Ga0066388_103425969	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	810	Open in IMG/M
3300005332\|Ga0066388_103999050	Not Available	752	Open in IMG/M
3300005335\|Ga0070666_10645194	Not Available	774	Open in IMG/M
3300005347\|Ga0070668_100579387	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300005437\|Ga0070710_10155021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1416	Open in IMG/M
3300005457\|Ga0070662_100852835	Not Available	776	Open in IMG/M
3300005466\|Ga0070685_10203529	Not Available	1288	Open in IMG/M
3300005466\|Ga0070685_11376766	Not Available	541	Open in IMG/M
3300005526\|Ga0073909_10355389	Not Available	680	Open in IMG/M
3300005535\|Ga0070684_101070398	Not Available	757	Open in IMG/M
3300005556\|Ga0066707_10211529	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1254	Open in IMG/M
3300005614\|Ga0068856_101857549	Not Available	614	Open in IMG/M
3300005618\|Ga0068864_102432845	Not Available	530	Open in IMG/M
3300005713\|Ga0066905_100040733	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	2749	Open in IMG/M
3300005764\|Ga0066903_102565920	Not Available	987	Open in IMG/M
3300005764\|Ga0066903_106936787	Not Available	588	Open in IMG/M
3300005985\|Ga0081539_10243237	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	804	Open in IMG/M
3300006032\|Ga0066696_10506274	Not Available	792	Open in IMG/M
3300006173\|Ga0070716_100852018	Not Available	710	Open in IMG/M
3300006175\|Ga0070712_100095861	All Organisms → cellular organisms → Bacteria	2183	Open in IMG/M
3300006796\|Ga0066665_10750279	Not Available	772	Open in IMG/M
3300006852\|Ga0075433_10601797	Not Available	965	Open in IMG/M
3300006881\|Ga0068865_101395633	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300006969\|Ga0075419_11298365	Not Available	540	Open in IMG/M
3300007255\|Ga0099791_10213968	Not Available	910	Open in IMG/M
3300009012\|Ga0066710_103653827	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	579	Open in IMG/M
3300009094\|Ga0111539_11258761	Not Available	859	Open in IMG/M
3300009094\|Ga0111539_12617214	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300009100\|Ga0075418_11290499	Not Available	791	Open in IMG/M
3300009137\|Ga0066709_101579514	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300009137\|Ga0066709_104160798	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300009137\|Ga0066709_104441230	Not Available	512	Open in IMG/M
3300009143\|Ga0099792_10838224	Not Available	605	Open in IMG/M
3300009156\|Ga0111538_10896421	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300009162\|Ga0075423_12243010	Not Available	593	Open in IMG/M
3300009162\|Ga0075423_12993147	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300009792\|Ga0126374_10762498	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	735	Open in IMG/M
3300010036\|Ga0126305_11165634	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300010046\|Ga0126384_10686514	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	906	Open in IMG/M
3300010320\|Ga0134109_10063873	All Organisms → cellular organisms → Bacteria	1237	Open in IMG/M
3300010322\|Ga0134084_10280365	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300010361\|Ga0126378_10648972	Not Available	1169	Open in IMG/M
3300010362\|Ga0126377_13125342	Not Available	535	Open in IMG/M
3300010366\|Ga0126379_10178214	Not Available	2017	Open in IMG/M
3300010366\|Ga0126379_13011578	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	564	Open in IMG/M
3300010371\|Ga0134125_12835203	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	527	Open in IMG/M
3300010373\|Ga0134128_12312558	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	592	Open in IMG/M
3300010376\|Ga0126381_101875141	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	865	Open in IMG/M
3300010376\|Ga0126381_101918584	Not Available	854	Open in IMG/M
3300010397\|Ga0134124_12702225	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	540	Open in IMG/M
3300010398\|Ga0126383_13040657	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	548	Open in IMG/M
3300010398\|Ga0126383_13247214	Not Available	531	Open in IMG/M
3300012198\|Ga0137364_10320030	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300012198\|Ga0137364_10958531	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300012200\|Ga0137382_10194302	All Organisms → cellular organisms → Bacteria	1392	Open in IMG/M
3300012200\|Ga0137382_11121371	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	561	Open in IMG/M
3300012207\|Ga0137381_11444270	Not Available	580	Open in IMG/M
3300012285\|Ga0137370_10203421	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300012285\|Ga0137370_10313844	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300012349\|Ga0137387_10992551	Not Available	603	Open in IMG/M
3300012350\|Ga0137372_10207506	All Organisms → cellular organisms → Bacteria	1563	Open in IMG/M
3300012361\|Ga0137360_11178057	Not Available	662	Open in IMG/M
3300012362\|Ga0137361_11605065	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300012469\|Ga0150984_118904270	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1693	Open in IMG/M
3300012532\|Ga0137373_10590156	Not Available	839	Open in IMG/M
3300012885\|Ga0157287_1066373	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300012903\|Ga0157289_10172425	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300012923\|Ga0137359_11646499	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	529	Open in IMG/M
3300012925\|Ga0137419_10973627	Not Available	702	Open in IMG/M
3300012929\|Ga0137404_10335049	All Organisms → cellular organisms → Bacteria	1320	Open in IMG/M
3300012929\|Ga0137404_11890125	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	556	Open in IMG/M
3300012930\|Ga0137407_10837217	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300012951\|Ga0164300_10394988	Not Available	758	Open in IMG/M
3300012971\|Ga0126369_12780523	Not Available	573	Open in IMG/M
3300012971\|Ga0126369_13499976	Not Available	514	Open in IMG/M
3300012977\|Ga0134087_10062172	All Organisms → cellular organisms → Bacteria	1496	Open in IMG/M
3300013297\|Ga0157378_12202848	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300013306\|Ga0163162_11068364	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300013307\|Ga0157372_11529528	Not Available	769	Open in IMG/M
3300014969\|Ga0157376_10191006	Not Available	1878	Open in IMG/M
3300015241\|Ga0137418_10708001	Not Available	771	Open in IMG/M
3300015359\|Ga0134085_10461859	Not Available	577	Open in IMG/M
3300015359\|Ga0134085_10499500	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	556	Open in IMG/M
3300015371\|Ga0132258_10389392	All Organisms → cellular organisms → Bacteria	3460	Open in IMG/M
3300015371\|Ga0132258_13491247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1077	Open in IMG/M
3300015372\|Ga0132256_100344806	Not Available	1582	Open in IMG/M
3300015372\|Ga0132256_100845621	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300015373\|Ga0132257_100361740	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1756	Open in IMG/M
3300015373\|Ga0132257_100766282	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1203	Open in IMG/M
3300015373\|Ga0132257_100970305	Not Available	1068	Open in IMG/M
3300015373\|Ga0132257_102950694	All Organisms → cellular organisms → Bacteria → Proteobacteria	620	Open in IMG/M
3300015374\|Ga0132255_100578794	Not Available	1658	Open in IMG/M
3300016294\|Ga0182041_10136075	All Organisms → cellular organisms → Bacteria	1871	Open in IMG/M
3300016341\|Ga0182035_11716891	Not Available	567	Open in IMG/M
3300016357\|Ga0182032_10389652	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1124	Open in IMG/M
3300016387\|Ga0182040_10577927	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	907	Open in IMG/M
3300018066\|Ga0184617_1171040	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	644	Open in IMG/M
3300018468\|Ga0066662_12926210	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	507	Open in IMG/M
3300018482\|Ga0066669_10021099	All Organisms → cellular organisms → Bacteria	3646	Open in IMG/M
3300019885\|Ga0193747_1015240	Not Available	1877	Open in IMG/M
3300020000\|Ga0193692_1003634	All Organisms → cellular organisms → Bacteria → Proteobacteria	4017	Open in IMG/M
3300020006\|Ga0193735_1029295	Not Available	1686	Open in IMG/M
3300020012\|Ga0193732_1004093	All Organisms → cellular organisms → Bacteria	2570	Open in IMG/M
3300020015\|Ga0193734_1070977	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	613	Open in IMG/M
3300020018\|Ga0193721_1045536	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1157	Open in IMG/M
3300025271\|Ga0207666_1006088	All Organisms → cellular organisms → Bacteria	1556	Open in IMG/M
3300025905\|Ga0207685_10834576	Not Available	509	Open in IMG/M
3300025909\|Ga0207705_10711377	Not Available	781	Open in IMG/M
3300025909\|Ga0207705_10788484	Not Available	738	Open in IMG/M
3300025916\|Ga0207663_11194236	Not Available	612	Open in IMG/M
3300025926\|Ga0207659_10885464	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300025928\|Ga0207700_11512141	Not Available	595	Open in IMG/M
3300025930\|Ga0207701_10346544	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1285	Open in IMG/M
3300025936\|Ga0207670_10048608	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2832	Open in IMG/M
3300025938\|Ga0207704_11515267	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300025945\|Ga0207679_10648089	Not Available	955	Open in IMG/M
3300025972\|Ga0207668_11239882	Not Available	671	Open in IMG/M
3300026095\|Ga0207676_12268193	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	541	Open in IMG/M
3300026330\|Ga0209473_1019122	All Organisms → cellular organisms → Bacteria	3226	Open in IMG/M
3300026374\|Ga0257146_1050205	Not Available	676	Open in IMG/M
3300026530\|Ga0209807_1126416	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300026557\|Ga0179587_10437144	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	855	Open in IMG/M
3300026688\|Ga0208071_100655	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300027453\|Ga0207624_110113	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	555	Open in IMG/M
3300027821\|Ga0209811_10351285	Not Available	570	Open in IMG/M
3300027907\|Ga0207428_10625185	Not Available	774	Open in IMG/M
3300028768\|Ga0307280_10157247	Not Available	787	Open in IMG/M
3300028803\|Ga0307281_10321196	Not Available	581	Open in IMG/M
3300030916\|Ga0075386_12234822	Not Available	687	Open in IMG/M
3300031226\|Ga0307497_10304992	Not Available	732	Open in IMG/M
3300031573\|Ga0310915_10390004	Not Available	989	Open in IMG/M
3300031716\|Ga0310813_10969620	Not Available	774	Open in IMG/M
3300031716\|Ga0310813_11802752	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300031720\|Ga0307469_11423158	Not Available	662	Open in IMG/M
3300032001\|Ga0306922_10363954	All Organisms → cellular organisms → Bacteria	1551	Open in IMG/M
3300032013\|Ga0310906_10592554	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.30%
Host-Associated	Host-Associated	23.70%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.72%
Plants	Host-Associated → Plants	23.70%
Aquatic	Environmental → Aquatic	0.58%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.45%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.25%
Sediment	Environmental → Aquatic → Sediment	0.58%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.01%
Loam	Environmental → Terrestrial → Soil → Loam	12.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.62%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.58%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.20%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.62%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.05%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.47%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.58%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.58%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.09%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.05%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.05%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.47%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.47%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.47%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.31%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.73%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	1.16%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.16%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.16%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.16%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.16%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.16%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.16%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.16%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.58%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.58%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.58%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.58%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.58%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.58%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.58%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.58%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.58%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.58%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.58%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.58%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.58%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459022	Grass soil microbial communities from Rothamsted Park, UK - FA2 (control condition)	Environmental	Open in IMG/M
2189573003	Grass soil microbial communities from Rothamsted Park, UK - FE2 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005266	Switchgrass rhizosphere microbial communities from Rose Lake, Michigan, USA - BV2.2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012885	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020012	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1	Environmental	Open in IMG/M
3300020015	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300025271	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026688	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN589 (SPAdes)	Environmental	Open in IMG/M
3300027453	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-D (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_00808050	2088090014	Soil	MKNKPDSADSSLSETMAARIEVNDVGDPALQKKMTDPVEALDGVIGTEIEKGALHVSYDPLAD
GPIPI_01952820	2088090014	Soil	MKNKPDSADSSLSETMAARIEVNDVGDPALQKKMTDAVEVWTA
GPIPI_00305760	2088090014	Soil	MKHKSDSAGSSLNETMAARIEIKELGDPTRQKQITDAVVALASVIEANDGSEPVALFN
GPIPI_02173570	2088090014	Soil	MKKEPDPADSSLSETMAARIEIKELGDPAHQKKITDAVEALDG
E41_03501590	2170459005	Grass Soil	MCKRHEEKRNPAAFNLSETMAARIEIKELGDPAHQKKIT
FA2_00358600	2170459022	Grass Soil	KPDSTDSSLSETMAARIEIKELGDPAHQRKSPMRSKL
FE2_03051110	2189573003	Grass Soil	MKNKPDPVDSSLSETMAARIEINQLGDPAHQKKITDAVEALDGVIETKIEKGALHVS
INPhiseqgaiiFebDRAFT_1005206401	3300000364	Soil	MKNKTNPADSSLSETMVARIEIQELGDPARQKEITXXVEAL
F14TC_1005231061	3300000559	Soil	MKKEPEHADSSLTETMAARIEIKELGDPAHQKKITDAVEALDGVIETKIEK
F14TC_1009098371	3300000559	Soil	MKDKPDSADSSLSETMAARIEIAELGDPAQQKKIIDAVEALDGVIETKIEKGAVHVSYDPLATTEKKIE
F14TC_1009126481	3300000559	Soil	MKDEPDAAQSSLSETMAARIEIKELGDPARESEITDAILALDGVIEARIQQGALHVSYDPLTTTEKKIEQA
F14TC_1017959282	3300000559	Soil	MNDEPDHTHSTLSETMAARIEIKDLGDPEREKKITDAVEALDGVI
JGI11643J11755_112505521	3300000787	Soil	MKNKPDSADSSLSETMAARIEVNDVGDPALQKKMTDAVEVWTA*
JGI11643J12802_122221692	3300000890	Soil	MKNKTDSADSSLSETMAARIEVNDAGDPAHQKKITDAVEALDGVIETKIEKGALHVSYDPLATTEKKXXXXSRFESERNHGSSN*
JGI1027J12803_1053664191	3300000955	Soil	MKKEPEHADSSLTETMAARIEIKELGDPAHQKKITDAVEALDGVIETKIEKGALHVSFDPLATTEKKIEQAIRSTGTT
JGI10216J12902_1058358372	3300000956	Soil	MYAMKEKANDVADSGLSETVVARIEINELSDPARQRQISDAVQALDGVIEFKIE
JGI10216J12902_1119916452	3300000956	Soil	MKKERDPADSSLSETMAARIEINELGDPARQKEITDAVEALDGVIETKIEKGALHVSYDPLVTTKKKSSRLSAR*
JGI10216J12902_1180245972	3300000956	Soil	MREEPNHADSTLSETMAARIEIQELADPACQRQITEAVEAL
JGI10216J12902_1248325212	3300000956	Soil	MKNKPDSADSSLSETMAARIEIKELGDPAHQKKITDAVGALDGVIETKIAKGALHVSYDP
JGI10220J13317_104624732	3300001139	Soil	MKDKSDHADSSLSETMAARIEIKELGDPGRQKEITDAVEALGGVIELKIAK
JGI24737J22298_102438731	3300001990	Corn Rhizosphere	MKNKPESPDSSLSETMAARIEIKELGDPAHQKKITDAVEALDGVIDTKIAKGALHV
Ga0062593_1031138651	3300004114	Soil	MKKEPDPADSSLSETMAARIEIKELGDPAHQKKITDAVEALDGV
Ga0063455_1014994151	3300004153	Soil	MKNTPDPSDSSLDETMAARIEINELGDPAHQKKITDAVEALDGV
Ga0062590_1004391882	3300004157	Soil	MKNKPDSADSSLSETMAARIEIEELGDPAHQKKITDAVAALDGVIE
Ga0062595_1026527701	3300004479	Soil	MKNKPDPADSSLSETMAARIEIKELEDPAHQKKITDAVAALD
Ga0062591_1025981602	3300004643	Soil	MKNKPDPADSSLTETMAGRIEIKELGDPAHQKKVTDAVEALDGVTEAKIEKGALHVSYDPLATTEKKIEQAV
Ga0062594_1006180603	3300005093	Soil	MKNKTDPADSSLSETIAARIEIEELGDPAHQKKITDAVAALDGVIETK
Ga0062594_1019681982	3300005093	Soil	MEKESDHADSSLSEPMAARIEIEEFDDPARHKEIADAVGAVDGVIETK
Ga0066684_108687991	3300005179	Soil	MKNNPDPIDSSPSEKMAARIEIKELGDPAHQKEITDAIEALDGVLETKIEKGALHVSYDPLETTEKKIEQAIR
Ga0066685_110423921	3300005180	Soil	MKDKPDNADSSLSETMAARIEIKELGDPARQKEITDAVKALDGVIEIKIEKGALHVSYDPLVTS
Ga0066676_105632772	3300005186	Soil	MKDKPDNADSSLSETMAARIEIKELGDPARQKEITDAVKALDGVIEIKIEKSAVYVSYDPLATSEKKVEQAILSTG
Ga0065702_1005552	3300005266	Switchgrass Rhizosphere	MKNKPDSADSSLSETMAARIEIKELGNPAHQKKITDAVAGLDGVIETKIEKGALHVSYDPLATTEKKIEQAIRST
Ga0065705_101530483	3300005294	Switchgrass Rhizosphere	MKNKPESPDSSLSETMAARIEIKELGDPAHQKKITDAVEALDGVIDTKIAKGALHVSYDPLATTEKKIE
Ga0070676_116033192	3300005328	Miscanthus Rhizosphere	MKNKPESPDSSLSETMAARIEIKELGDPAHQKKITDAVEALDGVIDTKIAKGALHVSYDPLATTE
Ga0070690_1007307032	3300005330	Switchgrass Rhizosphere	MKDKPDSADSSLSETMAARIEIKELGDPARQKKITDAVGALDGVIETKIAK
Ga0070670_1004243862	3300005331	Switchgrass Rhizosphere	MKNKPESPDSSLSETMAARIEIKELGDPAHQKKITDAVEA*
Ga0066388_1034259691	3300005332	Tropical Forest Soil	MKRQPDQADSSLSENMAARIEIKELGDPTRHKQIIDAVEGLGGIVETKIENDALHVSFDPLATTVKKIEQAIRSAG
Ga0066388_1039990502	3300005332	Tropical Forest Soil	MKNKSDPVDSSLSERMAARIEINELGDPAHQKKITDAVEALDGVIETKIEKGALHVSYDPLA
Ga0070666_106451941	3300005335	Switchgrass Rhizosphere	MKDKPDSADSSLSETMAARIEIKELGDPARQKKITDAVGAL
Ga0070668_1005793873	3300005347	Switchgrass Rhizosphere	MKKKTDPADSSLSETMAARIEIEGLGDPADQKKITDAVAALDGVIE
Ga0070710_101550213	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKDKPDHADSSLSETMAARIEIKELGDPGRQKEISAAVEALDGVIKLKIAKGALHVSYDPLATN
Ga0070662_1008528351	3300005457	Corn Rhizosphere	MKNEPDSADSSLSETMAARIEVNDVGDPAHQKKITDALEALDGILETKIEKGALHVSYDPLATTEKKIEQ
Ga0070685_102035291	3300005466	Switchgrass Rhizosphere	MKNKTDQTDSSLSETMAARFEIKELGDPARQKKITDAVQALDGVIETKIAKGALHV
Ga0070685_113767662	3300005466	Switchgrass Rhizosphere	MKNKPDSVDSSLSETMAARIEIKELGDPAHQKKITDAVGALDGVIETKIAKGALHVSYD
Ga0073909_103553892	3300005526	Surface Soil	MKNKPEPADSSLSETMAARIELKELGDPAHQKKITDAVAALDGVIETKMEKGALHVSYDPLATTEKKIEQ
Ga0070684_1010703982	3300005535	Corn Rhizosphere	MKNKTDQTDSSLSETMAARFEIKELGDPARQKKITDAVQALDGVIETKIAKGALHVSY
Ga0066707_102115291	3300005556	Soil	MKVKNDPADSSLTETMAARIEIKDLGDPGRQKEITDAVEA
Ga0068856_1018575491	3300005614	Corn Rhizosphere	MKNKTDQADSSLSETMAARFEIKELGDPAHQKKVTDAVQALDGVI
Ga0068864_1024328452	3300005618	Switchgrass Rhizosphere	MKNKPDSVDSSLSETMAARIEIKELGDPAHQKKITDAV
Ga0066905_1000407332	3300005713	Tropical Forest Soil	MREKPDQADSPLSETMAARIEIKDIGDPSRQKEITDAVEALDGVIEIKIAKGALHVSYDP
Ga0066903_1025659201	3300005764	Tropical Forest Soil	MKDKADSADSTLSETMAARIEINELGDPVHQKKIIDAVEALDGVIETKIEKGAVHVSYDPLATTEKKIE
Ga0066903_1069367872	3300005764	Tropical Forest Soil	MKNKPDSADSRLTETMAARIEIKELGDPVHQKKLTDAVEALDGVIETKIAK
Ga0081539_102432371	3300005985	Tabebuia Heterophylla Rhizosphere	MKNKPDPADSSLGETMAARIEIKELGDAARQKQITDAVGALEGVIDTKIEKGALHVS
Ga0066696_105062741	3300006032	Soil	MKNKPDPTDSSLNETMAARIEIKELGDAVHQKKITDAVEA
Ga0070716_1008520181	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKNKPDLADSSLSENMAARIEINELGDPVRQKELTEAVEALDGVIETKIEKGALHVSYDPLATTEKKIEQA
Ga0070712_1000958613	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MQNKPEPADSSLRETMAARIEINELDDPVRQKEISDAVKALDGVIETKIEKGAARLLRSVGND*
Ga0066665_107502792	3300006796	Soil	MKNKRDPTDSSLSEKMAARIEIKELGDPAHQKEITDAIEALDGVLETKI
Ga0075433_106017972	3300006852	Populus Rhizosphere	MKNKPDSADSSLSETMAARIEVNDVGDPAHQKKITDAVEALDGVIETKIEKGALHVSYDPLATTEKKIEQAIR
Ga0068865_1013956332	3300006881	Miscanthus Rhizosphere	MKDKSDHADSSLSETMAARIEIKELGDPGRQKEITDAVEALGGVIELKIAKGALHVS
Ga0075419_112983652	3300006969	Populus Rhizosphere	MKNKPDSADSSLSETMAARIEINELGDPAHQKKITDAVEALDGVIETKIAKGA
Ga0099791_102139681	3300007255	Vadose Zone Soil	MKKKPDPADSSLRETMAARIEIKELGDPTRQKEITDAVVALDGVIEAKIEKGALHVSYDPLATSEKKIEQAI
Ga0066710_1036538271	3300009012	Grasslands Soil	MKKEPDRTESSLSETMASRIEIEELGDPARQRKITDAVGALGGVIEVKIENDALHVSYDPLATTEKKIEQAVRSAGNT
Ga0111539_112587612	3300009094	Populus Rhizosphere	MKNKPDSADSSLSETMAARIEINELGDPAHQKKITDAVEALDGVIE
Ga0111539_126172142	3300009094	Populus Rhizosphere	MKNKTDSADSSLSETMAARIEIEELGNPTHQKKITDAVAALDGV
Ga0075418_112904991	3300009100	Populus Rhizosphere	MKNKSDSAHSSLSETMAARIEVNDVGDPAHQKKITDAVEALDGVIETKIEKGALHVSYDPLATTEKKIEQAI
Ga0066709_1015795143	3300009137	Grasslands Soil	MKNKPDPADSSLRETMAARIEIKELGDPAHQKKITDAVEALEGVTESRIEKGALHVSYDPLA
Ga0066709_1041607981	3300009137	Grasslands Soil	MKKEPDRTESSLSETMASRIEIEELGDLARQRKITDAVGALGG
Ga0066709_1044412301	3300009137	Grasslands Soil	MKNKPESADSSLSEVMAARIEINELKDPAQQKKMIDAVQAL
Ga0099792_108382241	3300009143	Vadose Zone Soil	MNDEPDHTDRSLSETMAARIEIKELGDPVRQKEITAAVEALD
Ga0111538_108964211	3300009156	Populus Rhizosphere	MKNKPDSANSSLSETMAARIEIKELGDPARQKKITD
Ga0075423_122430101	3300009162	Populus Rhizosphere	MKNKPDPADSSLSETMAARIEIKELGDPARQKEITDAVEALDGVIELKIAKGALHVSFDP
Ga0075423_129931471	3300009162	Populus Rhizosphere	MKDKPDHADSSLSETMAARIEIKELGDPNRQKEITDAVEALG
Ga0126374_107624981	3300009792	Tropical Forest Soil	MKNKPDSADSSLSETMAARIEIKELGDPARQKEITGALEALDGVIETKIENSALHV
Ga0126305_111656341	3300010036	Serpentine Soil	MKNKTDPADSSLTETMAARFEIKELGDPAHQKKITDAVAALEGVIETKIEKGALHVSYDPLATTEKK
Ga0126384_106865142	3300010046	Tropical Forest Soil	MYFEEMKNKPDHADPGLSETMAARIEINELGDVARQKEITDAVEA
Ga0134109_100638731	3300010320	Grasslands Soil	MKNNPDPTDSSLSEKMAARIEIKELGDPAHQKEITDAIE
Ga0134084_102803651	3300010322	Grasslands Soil	MNNEPDRTESSLSETMASRIEIEELGNPARQRKITDAVGALDG
Ga0126378_106489722	3300010361	Tropical Forest Soil	MKDKPNPADSSLSETMAARIEVAELGDPAQQKKIIDAVEALDGVI
Ga0126377_131253421	3300010362	Tropical Forest Soil	MKNKPDTADSSLSETMAARIEIKELRNPAHQKRITDAIEALNGVIETKLEKGALHVSHDPLTTTEKKIEQAI
Ga0126379_101782144	3300010366	Tropical Forest Soil	MKNKHERADSSLRETMAARIEIKKLGDPARQKKITDAVDALDGVIVLYGGY
Ga0126379_130115781	3300010366	Tropical Forest Soil	MYFEEMKNKPDHADPGLSETMAARIEINELGDPVHEKKIIDAVEALDGVIETKIEKGAIHVSYDP
Ga0134125_128352032	3300010371	Terrestrial Soil	MKNKPDPADSSLTETMAARIEIKELGDPAHQKKITDAVDALDGVIETKVEKGALHVSYDPLATTEKK
Ga0134128_123125581	3300010373	Terrestrial Soil	HEHLKGMKNKTDQADSSLSETMAARIEIKELGDPARQKKITDAVQALDGVIETKIAKVHCTSRTIR*
Ga0126381_1018751411	3300010376	Tropical Forest Soil	MKEKTDHTDSSLSETMAARIEINELGDSAREKETTDAVEALEGV
Ga0126381_1019185842	3300010376	Tropical Forest Soil	MKDKPNPANSSLSETMDARIEINELRDPAQQKKIIDAVE
Ga0134124_127022251	3300010397	Terrestrial Soil	MKDKPDSADSSLSETMAARIEIKELGDPAHQKKITDAVGALDGVIETKIAKGALHVSYDPLATTEKKIEQAI
Ga0126383_130406573	3300010398	Tropical Forest Soil	MKEEPNPAVSSLTETMAARIEINELGDPARQKEIIDAVEALDGVIETKIE
Ga0126383_132472141	3300010398	Tropical Forest Soil	MKDKSDPVDSSLSETMAARIEINELGDPAHEKEIIDAVEALDGVIETKIEKGAIHVSYDP
Ga0137364_103200302	3300012198	Vadose Zone Soil	LTQQSFRKKISKGMKNKPDPKDSSLSETMVGRIEINELGDPAHQKRITDSVEALDGVIETKIENGALHVSYD
Ga0137364_109585312	3300012198	Vadose Zone Soil	MKNKPDPADSSLRETMAARIEIKELDDPVRQKQISDAVEALDGVIETKIEKGAL
Ga0137382_100811881	3300012200	Vadose Zone Soil	RLARTSSKGMTNKPDPADSSLRETMAARIEIKELGDPAQQKKITNAVKALDGVIETKIEKGRAARLLRSAGHE*
Ga0137382_101943022	3300012200	Vadose Zone Soil	MKNKPDPVESSLRETMAARIEINELGDPVRQKEITDAVEALDGVIETKIEKGALHVSYDPLATTEKKIEQ
Ga0137382_111213712	3300012200	Vadose Zone Soil	MKNKPDPADSSLSETMAARIEIKELRNPAHQKEITDAVEALDGVIETKIEKGALHVSYDPLATTEKKIEQ
Ga0137381_114442702	3300012207	Vadose Zone Soil	MKNKPDPADSSLSENMAARIEINKLGDPTRQKEITDAVEALDGVIETKIEKG
Ga0137370_102034211	3300012285	Vadose Zone Soil	MKKGPDHANSSFSETMVARLEIKELGDPARERKIIDAVMALNGIIEAKIEKDALHVSYDPLATTENKIEQAV
Ga0137370_103138441	3300012285	Vadose Zone Soil	MKNKPDPADSSLRETMAARIEIKELGDPAHQKKITDAVEALEGVTESRIEKGALHVSYD
Ga0137387_109925512	3300012349	Vadose Zone Soil	MTNKPDPADSSLRETMAARIEIKELGDPAHQKEITDAIEALDGVIETKIEKGALHVSYDPLAT
Ga0137372_102075064	3300012350	Vadose Zone Soil	MKNKPDPTDSSLSEKMAARIEIKELGDPAHQKEITDAIEALDGVLETKIEKGAL
Ga0137360_111780572	3300012361	Vadose Zone Soil	MRNKPDPADSSLRETMAARIEIKELGDPVRQKEITDAVEALSGVIETKIEKGALHVSYDPLA
Ga0137361_116050651	3300012362	Vadose Zone Soil	MKKEPDRTKSSLSETMASRIEIEELGDPARQRKIVDAVGALGGVIEVK
Ga0150984_1189042702	3300012469	Avena Fatua Rhizosphere	MKNKPDPTDSSSSETMSARIEIEEPGDPARQKKISDAVEALD
Ga0137373_105901562	3300012532	Vadose Zone Soil	MKNKPDPADSSLSETMAARIEIKELGDPAHQKKITDAVEALDA*
Ga0157287_10663732	3300012885	Soil	MKNKTDSADSSLSETMAARIEIEGLGDPARQKKIT
Ga0157289_101724252	3300012903	Soil	MKNKTDPGDSSLSETMAARIEIEELGDPAHQKKITNAVAALDGVIE
Ga0137359_116464991	3300012923	Vadose Zone Soil	MKEEPDHADSSLSETMAARLEIEQLGDAVRQKEIIDAVVALDGVIEATAEKGALHVSFDPLATTQKKIEQAVRGTGNT
Ga0137419_109736271	3300012925	Vadose Zone Soil	MKNKPDPADSSLRETMAARIEIQELGDPVRQKEITDAVEALGGVIETKIEKGALH
Ga0137404_103350493	3300012929	Vadose Zone Soil	MTNKPDPADSSLRETMAARIEIKELGDPAHQKEITDAIEALDGVIETKIE
Ga0137404_118901251	3300012929	Vadose Zone Soil	MKNKPDPADSSLSETMAARIEIKELRNPAHQKEITDAVEALDGVIETKIEKGALHVSYDPLA
Ga0137407_108372171	3300012930	Vadose Zone Soil	MMNKPDPADSSLRETMAARIEIKELGDPAHQKEITDA
Ga0164300_103949882	3300012951	Soil	MKNKTDPADSSLSETMAARIEIEELGNPAHQKKITDAVAALDGV
Ga0126369_127805232	3300012971	Tropical Forest Soil	MKDKPDSADSSLSETMAARIEINELGDPAHQKKIVNAVEALDGVIKTKIQKGALHVSYDPLTTTENKIEQAI
Ga0126369_134999762	3300012971	Tropical Forest Soil	MKDKSDPVDSSLSETMAARIEINELGDPAHEKEIIDAVEALDGVIETKIEK
Ga0134087_100621721	3300012977	Grasslands Soil	MKKEPAGDSSLSETMVARIEINELGDVARQKQITDAVEALDGVIEMKI
Ga0157378_122028481	3300013297	Miscanthus Rhizosphere	MKNKTDPGDSSLSETMAARIEIEELGDPAHQKKITDAVA
Ga0163162_110683641	3300013306	Switchgrass Rhizosphere	MKKKTEPADSSLSETMAARIEIKDLGDSAKQKKIADAVEALDGV
Ga0157372_115295281	3300013307	Corn Rhizosphere	MKNKPDPADSSLSENMAARIEINELGDPVHQKELTDAVEALDGVIETKIEKGALHVSYDPLATTEKKIEQA
Ga0157376_101910063	3300014969	Miscanthus Rhizosphere	MKNESDPSGSSLSETMAVRIEIEELGDPAHQKKITDAVAGLDGVIETKIEKR
Ga0137418_107080011	3300015241	Vadose Zone Soil	MKNKPDPTDSSLSEKMAARIEIKELGDPAHQKEITDAIEALDGVIETKIEKGALHVSYDP
Ga0134085_104618592	3300015359	Grasslands Soil	MKNKSDADSSLSETMAARIEIKELGDPGRQNEITDAVEALDGVIELKIAKSALHVSYDPLATNE
Ga0134085_104995002	3300015359	Grasslands Soil	MKKEPAGDSSLSETMVARQKQITDAVEELDGVIEMKIEKGALHVSYDPLATTE
Ga0132258_103893924	3300015371	Arabidopsis Rhizosphere	MKNKTGSVDPSLSETMAARIEIKELGGPAHQKQITAAIERLDGIIETKIA*
Ga0132258_134912472	3300015371	Arabidopsis Rhizosphere	MKNKTDQTDSSLSETMAARFEIKELGDPAHQKKITDAVQALDGVIETKIAKVHCTSRTIR
Ga0132256_1003448061	3300015372	Arabidopsis Rhizosphere	MKNKTDQTDSSLSETMAARFEIKELGDPARQKKITDAVQP*
Ga0132256_1008456212	3300015372	Arabidopsis Rhizosphere	MKNKTDSADSSLSETMAARIEIEELGNPAHQKKITDAVAALDGVIE
Ga0132257_1003617404	3300015373	Arabidopsis Rhizosphere	MKNKNDSTDSSVSETMAARIEITELGDPTRQKQITDAI
Ga0132257_1007662823	3300015373	Arabidopsis Rhizosphere	MKNKPDPNGSSLSETMAARIEIKELGDPAHQKKIIDAVAALDGVIETKIAKRALHVSYDPLATTEK
Ga0132257_1009703052	3300015373	Arabidopsis Rhizosphere	MKNEPDSADSSPSETMAARIEVNDVGDPAHQKKITDALEALDGVLETKIEK
Ga0132257_1029506941	3300015373	Arabidopsis Rhizosphere	MKNKPDPADSSLSETMAARIEIKELGDSAHQKEITDAVEALDGVIEIKIEKGALHVSYDP
Ga0132255_1005787941	3300015374	Arabidopsis Rhizosphere	MMNKPEPADSRLSETMAARIEINELGDPAQQKKITDAVEALDGVI
Ga0182041_101360753	3300016294	Soil	MKDKPDSADSSLSETMAARIEINELGDPAHEKKIIDAVGALDSVIENQNRERALHVSNDPLATIEKKIEQAIRST
Ga0182035_117168912	3300016341	Soil	MKNKPDSADPSLSETMAARIEIKELGDPAHQKKITDAVKALDG
Ga0182032_103896522	3300016357	Soil	MKNNPDPVDSSLSETMAARIEINELGDPIHEKKIIDAV
Ga0182040_105779271	3300016387	Soil	KNKPDPADSSLNETIAARIEIKELGDPAHQKKITDAVEALDGVIETK
Ga0184617_11710401	3300018066	Groundwater Sediment	MKNKPDLADSSLTETMAARIEIKELGDPTRQKQITDEIEALDGVIEAKIE
Ga0066662_129262101	3300018468	Grasslands Soil	MKNKPDPTDSSLNETMAARFEIKELGDAVHQKKITDAVEALHGVIETK
Ga0066669_100210994	3300018482	Grasslands Soil	MNNKTDPADSNLSETMAARIEIEELGDPAHQKKITDEVEA
Ga0193747_10152402	3300019885	Soil	MKKEPDRTESSLSETMAARFEIEELGDPDRERKIIDAV
Ga0193692_10036341	3300020000	Soil	MKNKTDSVDSSLSETMAARIEIKELKDPAHEKKITDAVAALNGIIETKIEKGA
Ga0193735_10292952	3300020006	Soil	MKDKPDHADSSLSETMVARIEIKDLGDPNRQKEITDA
Ga0193732_10040931	3300020012	Soil	MKDKSDRADSSLSETMAARIEIKELGDPTRQKEITDAVEALDGVIETK
Ga0193734_10709772	3300020015	Soil	MKNKPDPADSSLSENMAARIEIKELGDPVRQKEITNAVEALGGVIETKIEK
Ga0193721_10455362	3300020018	Soil	MKKEPDRTESSLSETMAARFEIEELGDPDRERKIIDAVGALDGVIEVKIENGALHVSYDALATTEKK
Ga0207666_10060884	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	PESPDSSLSETMAARIEIKELGDPAHQKKITDAVEA
Ga0207685_108345762	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MKDKPDSADSSLSETMAARIEIKELGDPAHQKKITDAVGALDGVIET
Ga0207705_107113771	3300025909	Corn Rhizosphere	MKNKTDQTDSSLSETMAARFEIKELGDPARQKKITDAVQALDGVIESKIAKGALHVSYDPLTTTE
Ga0207705_107884841	3300025909	Corn Rhizosphere	MKNKPDAADSSLSETMAARIEINELGDPTHQKKITDAIVALDGVIEAK
Ga0207663_111942362	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MKDKPDSAADSSLSETMAARIEIDELGDPAHQKKI
Ga0207659_108854642	3300025926	Miscanthus Rhizosphere	MKNEPDSADSSLSETMAARIEVNDVGDPAHQKKITDALEALDGVLETKIEKGALHVSYDPLATTEKKI
Ga0207700_115121412	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MNNKTDPVDSSLSETMAARIEINDLGDPAQQKKITDAVGAMDGVIEGKIENGALHVSYDP
Ga0207701_103465441	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKNKPEPADSSLSETMAARIEIKELGDPAHQKKITDAVAALDGVIETKIEKGA
Ga0207670_100486081	3300025936	Switchgrass Rhizosphere	MKNKTDSADSSLSETMAARIEIEGLGDPARQKKITD
Ga0207704_115152672	3300025938	Miscanthus Rhizosphere	MKDKSDHADSSLSETMAARIEIKELGDPGRQKEIT
Ga0207679_106480891	3300025945	Corn Rhizosphere	MKNKTDQTDSSLSETMAARFEIKELGDPARQKKITDAVQALDGVIETKI
Ga0207668_112398822	3300025972	Switchgrass Rhizosphere	MKNKPDAADSSLSETMAARIEINELGDPTHQKKITD
Ga0207676_122681931	3300026095	Switchgrass Rhizosphere	MKNKPDSVDSSLSETMAARIEIKELGDPAHQKKITDAVGALDGVIETKIAKGALHVSYDPLGTTEKEIEQAICST
Ga0209473_10191221	3300026330	Soil	MKKEPAGDSSLSETMVARIEINELGDVARQKQITDAVEALDGVIKM
Ga0257146_10502051	3300026374	Soil	MKNKPEPADSSLSENMAARIEIKELGDPAHQKKITDAIEAL
Ga0209807_11264162	3300026530	Soil	MKNKPEPNDSSLSETMAARIQINELGDPAHQKKITDAIEALEGVSETKIENGALHVSYDP
Ga0179587_104371441	3300026557	Vadose Zone Soil	MTNKPDPADSSLRETMAARIEIKELGDPAQQKKITNAVKALDGVIETKIEKGRAARLLRSAGHE
Ga0208071_1006552	3300026688	Soil	MKNKPDAAASSLNETMAARIEIKELGDPAQQKKITDAVEALDGVIET
Ga0207624_1101131	3300027453	Soil	MKNKPDSPDSSLSETMAARIEIKELGDPAHQKKITDAVGALDGVIETKIAKGALHVSYDPLAT
Ga0209811_103512851	3300027821	Surface Soil	MKNKPEPADSSLSETMAARIEIKELGDPAHQKKITDAVAVLDGVIESKIEKGALHVSYDPLATTEKKI
Ga0207428_106251852	3300027907	Populus Rhizosphere	MKNKPDSADSSLSETMAARIEINELGDPAHQKKITDAVEALDGVI
Ga0307280_101572473	3300028768	Soil	MKNKPDPADSSLTETMAARIEIKELTDPTRQKQITDAIVALDGV
Ga0307281_103211961	3300028803	Soil	MKNKTDSVDSSLSETMAARIEIKELGDPAHQKKITDAVAALDGVIESKIEKGALHVSYD
Ga0075386_122348222	3300030916	Soil	MKNKPDPTGSSLSETMAARIEIKELGDPAHQKKITDAIAALDGVIETKIEKGA
Ga0307497_103049922	3300031226	Soil	MKDKSDPTSSSLSETMAARIEIKELGDPAHQKKITDAVAASDGVI
Ga0310915_103900041	3300031573	Soil	MKDKPDSADSSLSETMAARIEINELRDPAHEKKIIDAVGALDSVIENQNRERALHVSNDPLA
Ga0310813_109696201	3300031716	Soil	MKDKPDSADASLSKTMAARIEIDELGDPAHEKKITDA
Ga0310813_118027521	3300031716	Soil	MKDKTSHTNSSLRETMAARIEIKELGDPACQKKLTDAILALDGVIEARIENGALHVS
Ga0307469_114231582	3300031720	Hardwood Forest Soil	MKNKPDPADSSLSETMAARIEINELGDPAHQKKITDAVEALDGVIETKIAKG
Ga0306922_103639541	3300032001	Soil	MKNNPDPVDSSLSETMAARIEINELGDPIHEKKIIDAVEAVDGVIETKIEKGAIHVSYDPLATTEKKIEQAIRS
Ga0310906_105925541	3300032013	Soil	MKNKPDSADSSLRETMAARIEIKELRDPARQKKITD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F035042

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences