3300026685: Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN349 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026685
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054417 | Ga0208706
• Sample Name: Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN349 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10441038
• Sequencing Scaffolds: 17
• Novel Protein Genes: 18
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → grassland soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Chapel Hill, North Carolina, USA
• Coordinates
  • Lat. (^o): 35.913
  • Long. (^o): -79.056
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000268	Metagenome / Metatranscriptome	1411	Y
F002428	Metagenome / Metatranscriptome	560	Y
F003530	Metagenome / Metatranscriptome	481	Y
F006714	Metagenome / Metatranscriptome	366	Y
F007830	Metagenome	344	Y
F011423	Metagenome / Metatranscriptome	291	Y
F013809	Metagenome / Metatranscriptome	268	Y
F024659	Metagenome / Metatranscriptome	205	N
F027644	Metagenome / Metatranscriptome	194	Y
F032737	Metagenome / Metatranscriptome	179	Y
F038257	Metagenome	166	Y
F042206	Metagenome / Metatranscriptome	158	Y
F049249	Metagenome / Metatranscriptome	147	Y
F068677	Metagenome	124	Y
F080572	Metagenome / Metatranscriptome	115	N
F093590	Metagenome / Metatranscriptome	106	Y
F099368	Metagenome	103	Y
F105954	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208706_100193	All Organisms → cellular organisms → Bacteria	1182
Ga0208706_100203	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1165
Ga0208706_100281	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1052
Ga0208706_100399	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	959
Ga0208706_100590	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	856
Ga0208706_100701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	804
Ga0208706_100779	All Organisms → cellular organisms → Bacteria	786
Ga0208706_100886	All Organisms → cellular organisms → Bacteria	757
Ga0208706_101001	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	729
Ga0208706_101111	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	704
Ga0208706_101308	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	669
Ga0208706_101345	All Organisms → cellular organisms → Bacteria	664
Ga0208706_101490	All Organisms → cellular organisms → Bacteria	643
Ga0208706_101791	Not Available	601
Ga0208706_101928	All Organisms → cellular organisms → Bacteria	585
Ga0208706_102580	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	528
Ga0208706_102595	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	527

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208706_100193	Ga0208706_1001931	F080572	TSKSLRDITRDYFDAEANREFLCEGAVFTALIGMAVMPIATGISAVLHLLNVLPLF
Ga0208706_100203	Ga0208706_1002032	F032737	SDESTEKSPTPRAPKTAVFLMAVIVICLAMLAAFANVQRSRRDAVEVVAVKSTTSPTPQE
Ga0208706_100281	Ga0208706_1002812	F093590	VILRSLPATALIVVGLFAVDRPKGYASSSAPSPSERPKLAPFEERLAAAESVKVQTVILGIELDSTLESAHSKLDSLGKPSATSLDGADEAAGRTEDERKVSWQLAKTDYGSVFVKADEKERITYIAASLRPGKEIPFDKIGQLEK
Ga0208706_100399	Ga0208706_1003992	F042206	MQISAQPAFNQSGLAFHTAAGKITFAGEMYVAAGTNASTETTGDFIIAQINVRAAGRTDGRCRGARYLLFAFTFEALDDRTGLTIPKIFEFAKKR
Ga0208706_100590	Ga0208706_1005902	F027644	EKTVKTLAKRLLAEPSKKTKKTTNAEMEAALLRLNPQLNQIRELKEGTPIVVPVEFPLDGDESFTPSRGLTDALLQQARDAVSRLRAVVKERVESSAEEADRVQTWLKSAQAKEFLRQSPELKESFSSAATAAKTLAKEQAEALSAEESALGKIKSQLTAFRVK
Ga0208706_100701	Ga0208706_1007011	F099368	MAGKNWKGWTWKPEHGFSFGEMWSLCEQGNVAETRVEFSNGLLIGLFWEESVFQNWWQLNDKGEPLKKYAAGFGQIERNTLNIMNALFPEKRNKYMPEAMVQDPLLSVNASIDYLRYLRKTFKNSTKRQILKNYGGAGNGGSTDVDKKVDQWLACEAILIGAGGDFTADVVTRALNAAEP
Ga0208706_100779	Ga0208706_1007792	F002428	MNGKDESLPLGNPLVFEHSTPTGATEVAQRLVAFPFTPPDVKLKEKEPLSSSNDWFTKHDKDKIDQLGSLDFYSPSGPESVGVVPKLHNTSAGIEIYQLPPTLTK
Ga0208706_100886	Ga0208706_1008862	F024659	MRYWIIIPVALAVIGIGSIAAAVLLNPLRRSETDIRGWLLHQAPLGSSRQEVMVLVARRGWKFHPEYRGRFINKSVPVGGFGAELGTYLGVRDVKVDAYWKFSGSDNLDEVYVNKWKEGF
Ga0208706_101001	Ga0208706_1010011	F003530	MKTTRHTINVPAEMEQLLNDRIRDFRSLSAYFVALCFTDLLYLPKRPIAKAFANASWRQQRHAIESLLTLRKQGWKGINLKVHFDAVTQVEKVAQKCLKPDDWLLDHIQEELAFMRGTDLRR
Ga0208706_101111	Ga0208706_1011111	F068677	MAVADSRYLSETRPVAGLQHHLVQLRRRMERILSQGAAAKYVIAMKFSTEAIVALTVAVVFVLLSLGVIAREQGQGPARRMHNAYIANNANLSPVAASETDVLGFY
Ga0208706_101308	Ga0208706_1013082	F006714	LIREVCLIRRNFIDTWLKAFAVKEGRFDFDAQNAARRVVESFFDNLIVEATVQFVEECQEAVRRLNAGLKPSVRGNAEFVQRITHVLREPLGPLLLGLEVLLREESLSPRGIEMIGLLQRGVKKEADAIEELLRSTELFEKDVAK
Ga0208706_101345	Ga0208706_1013452	F013809	LKNVVGVIVRREKALDFSGCNSRPGTGSLHPVAIEAAVAVTKLSELSMERVARRPRERAGHNVSER
Ga0208706_101490	Ga0208706_1014902	F011423	GTWKGPRHDTQYRADGTWVLDPPDDGDNTRGKWRIEHSRLIETWRLTDETEDSSSVEEIIELTDKIFKSRIILQEGPGKPEGQVLPSEIFTVTRVTDQK
Ga0208706_101791	Ga0208706_1017911	F038257	PARMELIKLIRHRLHEPLGPTLLVLQLLLREESLSPQGVALIKMLQRSIKEEVRAIHELLTIIETFIQEPAQADSQTEQRLGESFES
Ga0208706_101928	Ga0208706_1019281	F000268	SKASGRLGRPIRFEFYRDSTTRPKTDIKSFTVSTRTADDRWKAMWSILGGRGLTRPIEYGVTPPGFTTMIQPQKLIAGRVYAGFATDEHGGSSGVTFGFDKNGKMIFPDSFDQ
Ga0208706_102580	Ga0208706_1025801	F007830	FLVQSEYVAWIFAVEVFQTFYQWAMRRGMYPALAAGGIMVTAGGLSLPATVQHFLVWRDPDHFFGDGKPFGRELLTYDRQTLATMEFLQTDAHPGDVVLTSDNLIAPVLALTKCRVPMGYFAQTAVARGDYMRREAAEKKFWAAWHEGNIQEEFLREVGVRYIVVLKSSDRLPAKI
Ga0208706_102595	Ga0208706_1025951	F049249	TGVVFAYIWPEHTIDRLRDALRATLRQLAQLLEIPRPKTSLETGKAEAHSLIAGTSTSFDQAKRYAELTQFELEESPSSERTSLENLEETLSRAEEIFASAKSLVQGDAKQNQSRTALQSEIAVELRRLSA
Ga0208706_102611	Ga0208706_1026111	F105954	AVWPHSFGPLLLSQMLVSAVTAIVFALICSRFFEMSNGLSFFFGLLCALDPCQLVWERYVMTETFSLLVYVLVLYWSLAYLRDRRLWQLAIVQALSVLLIGFRMSFLPLVQACTVLLPLIAFARCAFPVLRNSSEARVMGGRVLTTGLMHVTVSIAMMLVMHGAYKYANGWLSN