Sample 3300026680

Basic Information
IMG/M Taxon OID	3300026680 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053063 \| Gp0054294 \| Ga0208345
Sample Name	Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN609 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300026680 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0053063 | Gp0054294 | Ga0208345

Sample Name

Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN609 (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	9497626
Sequencing Scaffolds	32
Novel Protein Genes	33
Associated Families	33

Dataset Contents

Total Genome Size

9497626

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1
Not Available	15
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → environmental samples → uncultured Pseudonocardia sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → environmental samples → uncultured Pseudonocardia sp.

All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

All Organisms → cellular organisms → Bacteria → Acidobacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Ecosystem Assignment (GOLD)

Name

Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	grassland biome → land → fertilized soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

grassland biome → land → fertilized soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Gorham, Kansas, USA
Coordinates	Lat. (^o)	39.05	Long. (^o)	-99.1	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Gorham, Kansas, USA

Coordinates

Lat. (^o)

39.05

Long. (^o)

-99.1

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001339	Metagenome / Metatranscriptome	719	Y
F005860	Metagenome / Metatranscriptome	388	Y
F006607	Metagenome / Metatranscriptome	369	Y
F007194	Metagenome / Metatranscriptome	356	Y
F007604	Metagenome	348	Y
F008549	Metagenome / Metatranscriptome	331	Y
F009015	Metagenome / Metatranscriptome	324	Y
F009235	Metagenome / Metatranscriptome	321	Y
F009289	Metagenome / Metatranscriptome	320	Y
F009423	Metagenome / Metatranscriptome	318	Y
F010054	Metagenome / Metatranscriptome	309	Y
F014615	Metagenome / Metatranscriptome	261	Y
F017450	Metagenome / Metatranscriptome	240	Y
F018073	Metagenome / Metatranscriptome	237	Y
F024739	Metagenome / Metatranscriptome	204	N
F025135	Metagenome / Metatranscriptome	203	Y
F028653	Metagenome / Metatranscriptome	191	Y
F028733	Metagenome / Metatranscriptome	190	Y
F034171	Metagenome / Metatranscriptome	175	Y
F034331	Metagenome	175	Y
F042550	Metagenome / Metatranscriptome	158	Y
F047985	Metagenome / Metatranscriptome	149	Y
F048065	Metagenome / Metatranscriptome	148	Y
F049468	Metagenome	146	N
F052034	Metagenome / Metatranscriptome	143	Y
F053847	Metagenome	140	Y
F056043	Metagenome / Metatranscriptome	138	Y
F060447	Metagenome / Metatranscriptome	133	Y
F062269	Metagenome / Metatranscriptome	131	N
F081733	Metagenome	114	N
F083819	Metagenome	112	Y
F101452	Metagenome	102	N
F103545	Metagenome / Metatranscriptome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208345_100032	All Organisms → cellular organisms → Bacteria	2495	Open in IMG/M
Ga0208345_100123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1807	Open in IMG/M
Ga0208345_100125	Not Available	1796	Open in IMG/M
Ga0208345_100144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → environmental samples → uncultured Pseudonocardia sp.	1740	Open in IMG/M
Ga0208345_100146	Not Available	1731	Open in IMG/M
Ga0208345_100151	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1707	Open in IMG/M
Ga0208345_100300	All Organisms → cellular organisms → Bacteria	1371	Open in IMG/M
Ga0208345_100312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1358	Open in IMG/M
Ga0208345_100528	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
Ga0208345_100671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1022	Open in IMG/M
Ga0208345_100818	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
Ga0208345_100935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	897	Open in IMG/M
Ga0208345_100964	Not Available	884	Open in IMG/M
Ga0208345_101178	Not Available	812	Open in IMG/M
Ga0208345_101308	Not Available	775	Open in IMG/M
Ga0208345_101334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	769	Open in IMG/M
Ga0208345_101578	Not Available	713	Open in IMG/M
Ga0208345_101694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	691	Open in IMG/M
Ga0208345_101697	Not Available	690	Open in IMG/M
Ga0208345_101729	Not Available	685	Open in IMG/M
Ga0208345_101852	Not Available	660	Open in IMG/M
Ga0208345_101898	Not Available	651	Open in IMG/M
Ga0208345_101944	Not Available	643	Open in IMG/M
Ga0208345_102114	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
Ga0208345_102368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	577	Open in IMG/M
Ga0208345_102373	Not Available	575	Open in IMG/M
Ga0208345_102437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	567	Open in IMG/M
Ga0208345_102506	Not Available	559	Open in IMG/M
Ga0208345_102826	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
Ga0208345_102940	Not Available	514	Open in IMG/M
Ga0208345_103016	Not Available	508	Open in IMG/M
Ga0208345_103055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	505	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208345_100032	Ga0208345_1000323	F009289	MPEPTEDLSPTDRELLRRAELALTQLNNRHGLEPDQSATLTAIRLRLEGKSRASLDDLLTAGKDLGGKDPLTEAMARGQQGPSFDDLVAGAEKKPKKSLDDLL
Ga0208345_100123	Ga0208345_1001233	F053847	VASDTQRPDSSGVTQLPAAPTAGDLEGPPPEDRAVPKARPGAYWAGLVALAVGLAVTVVTLATRVTSIVQTILLAVPLVFIGIGLERVGRGTSRGSLRAVGAVLVAVAVVGPLVLSLSSPEGAVIDNFSQPVPSGAARAELRVSMGGGQLRVAPEAAGLYEAELRSPGLPSTQVTTAKDLAVLDLRSPAQRGMLARNRGNDWRIRLNTSLAWQVDVSAGAVTADLDLRQLNVRGVTVQSGVSRLAVRLGDPAAEVPVDLQLSTGLVDLYLPRTATVEVRVEGLSVDNFRDAGLTRDGDRWRAQGSGTGRYVVQVRTSAARVRIHRA
Ga0208345_100125	Ga0208345_1001252	F014615	VIDRLRVTPWTALTGPKGDVRLGDVCPEPAYIGTKLRDLGPIAASVPAAAVGGGQDGRQAFVVDRREVPT
Ga0208345_100144	Ga0208345_1001442	F101452	VPASTELSEAVLSQRRLIERLLVHGRRETGEEPSLRSPDAGDPEFVKNLQIFLRLVVDADALYLRAAHGLSGDAEQAASVKGRLEELRQRIALPTDVPLTLELLLGRRFELERLLIELGDRTYLAGRLADVFDEQPGTVGTWRSLY
Ga0208345_100146	Ga0208345_1001462	F008549	VNGAEPAFGRRSTDSERQSRSGRPGPGDILVLHTPDGLRFRLVKGVPEGDEAEVLAAAIDRVEAWDKSQEQGPWVTNVRPGIGVRAYQAGTRWGASLRSTWGRDL
Ga0208345_100151	Ga0208345_1001512	F005860	MPVSIEPPPPSAEQLADWQALIERIRQGDRSQLLAWDEAKAVGTTAPYQVLITQLVHQRLRSAPPLLVGSVTGIIAVLRVDPTEASMIFRRRRLGDIGWTVTFGAAQGMLTYWVLQPERIVVLLDLTWAA
Ga0208345_100300	Ga0208345_1003002	F009235	MAEQRTFRALGGVDQGSLPPAGEVADALRAEFDRVFALKASLRGEAEAGVSPTGRRTTAQDEAKLRTLVASVEGASRFAIRLRLLSPAQVRALWAEAMGRGLYDGWDAGQSAYDQAAETDVGDAPISTSGAPPEVRRGDA
Ga0208345_100312	Ga0208345_1003122	F010054	MLIYGFVLWGLALLGIRLPIELPRWLFLVLEAVVIWFLWRGVKAARRAPHNNVRLFNAQENWANAFTLQALILFLW
Ga0208345_100528	Ga0208345_1005282	F034171	MEAHLPEFRQQASGQRPLYWILGIGFVVGLAAQIVGFLLKTSATTEPLLLVADLLYALGWSLWTGVVVVFFVQIWPEAKRRQLKRGLDAYEAAVREQARAGGDQASRDDGAPTAR
Ga0208345_100671	Ga0208345_1006711	F007604	MMPTDPTRRSALSVALLAHVNTGYEVDCWMAGDGQPHGSVRYDTDRAWFTIQGRPAALRKLAETLVRCAELTEQTYPAPSPPVVEGVAG
Ga0208345_100818	Ga0208345_1008181	F007194	VKGLLVVLTGFVLLPGSVYMLLAANFGALKGYLIAATAFFGFLIMLSAVWLFGIPGTTPLTGPKGTQPTFNFFTLNDPQAGTYDSVRDFQGDAGNGWQAAPAGEVQPGSAQETLKADLDTARQKAVQDLITQTNKNVRDSSDELDVTNLDARTFYTIQDGTEVAAVVISPKTPAAGSGLKRPEFAPKTFFAYRDPGNPRLPSILFLAGS
Ga0208345_100935	Ga0208345_1009353	F103545	MFIRILRGQAYDGAATLAEIARWRQELGAGVLGWQRLTAGIGDAGELVLALRYDTEAAARRELFNRLHDGRELGDRA
Ga0208345_100964	Ga0208345_1009641	F028733	MPIDPTDLAKSIGALGSLDPERGLARTLQQVTDGAKQLFRADAAGLMLIDAEGQLRWASASDQTAQTVEGEQERLAQGPCA
Ga0208345_101178	Ga0208345_1011781	F006607	SAGGPRGTGAGEGLLSRCPEVIVVTEPPDWPLEQPAEGTLRPWYLTSHGFLVVLFRDPAEARRAEQGLLERQVPAEELRLYESEELQRNLSRLQQERSLLARAVAALVADPDAKRRFLDNAQAGGAAMWLVAPTKDRADHLVGLLADYGYSSLRYYGQEGVSDLQRDAD
Ga0208345_101308	Ga0208345_1013082	F060447	MAAGDADPGPRLDAELLAAEVAESLDEFFDHMSVAEGIGAKLNRQLLAFLKAEVLPQANRAAEMGVDPTPLFAVVVRVLRTYADALQRPPSADGETTAWSRPPADGR
Ga0208345_101334	Ga0208345_1013342	F018073	MRRGGSLLITILLLVAAFWAGIQYERNNCRIDLPSTAGQVDQSVKCRDYKGVDLPG
Ga0208345_101578	Ga0208345_1015782	F017450	MPTEKDPTQEIQTQVLDGIRKSQEAVIDGMRAWTETIQQLVPGTGQSALPRTDQLPSPAEVVDSVFDFAAQLLAAQRELAHSVLGATTAIGESVQKETEKAAGTAKKST
Ga0208345_101694	Ga0208345_1016942	F009015	LTYCRPTGRLDPNPADLAYGSIDLAALEYRARRGEIILLYEDETILWRFALPRAGWWRKAQRARLPTRPLRQSQIKREETLKRQAWLQYRSWSRITSGVLLSVIGAVQYGTSKVFYKIVPHFDAQELRQYLHQVMAAF
Ga0208345_101697	Ga0208345_1016971	F001339	VGTKTVTMYVSDLDQSEIPAGQAYQLSIRHPDGSTQQLDISEQNYRDLNLAGAGKTLKKRGRKPGSTTTADSTPRKPRRRQTSEPPVTA
Ga0208345_101729	Ga0208345_1017291	F048065	MNIRAILSHELVVGDYLGVIASMHQPEHFRRVEKLEYIDADLGRPHLKHDVFYLEAANIGPVIAWCHGIAGPLILPAGDIHIWLDVPQDRRTADENQVYWGVLSGGEEPMFSFSRLPDQTDTWQQRRIQEQQAFWQRD
Ga0208345_101852	Ga0208345_1018521	F052034	VAIKGKSKRSQGRPVRRPATGPRIHTVERRLPWYRATAFPVTLAVIALIGTLVAAQNRVQEGWTRDDVRRFTADLRAQTDQLPSVIGTGTRELPGFPSAQELTTGKLEPKKLAVRASGWSAKLGQIQSRVQEITVGEPPAEAGTDGEPSNAAGGR
Ga0208345_101898	Ga0208345_1018981	F028653	SGRRTDGTVVVERQVVLLSGDAGLALTMRALVSNGDRIAHYESAAALAEWSTPKVAAVILDSQPHVRRLSYKHVRERYDGPLIVLLDKDERRPDLPPDGARRYLHRPFEVAELSRLLDTPVPELGSLEAAIIAAWSRHATAEPAAAPVRPARPSQVPAWRPSRPRRVRAWAATIIALMGLLLVLGLSDRGSCAPSCTQLGGGVAGVEQHALGHTRI
Ga0208345_101944	Ga0208345_1019442	F062269	MADARIDRPGYLGRVVQGLRGAATLRPRPRQRPAPQQAPAPAGPSADGLDAAEQAALEQLGEADGYATRWPVRREVARSLASRQLVVIASDYVLLTKAGRRALTGEAGARD
Ga0208345_102090	Ga0208345_1020901	F049468	MDVRLTNVYVADARLVAEGLVQPEDAMAVFVGRAGKGRVAPFVVRRSYTGAGGWYREAMAVLAPNGDVVWRSPERPLTLRGSSKIDTFTDEVHGVAVDSADDHELVLLVGGDEVGRVPVAVLD
Ga0208345_102114	Ga0208345_1021141	F034331	MDEHRRPENLLGVLLDAYWTSLAHDPLPALLLTGLLSLAGVLVVLLGQIVGDLVAQLLEWLR
Ga0208345_102368	Ga0208345_1023681	F056043	RREAGYEPPPKAEQPATRTKAKPEARRPAAGRAQSPLLKKAQVGDVDRKGRVYERPMLLHPRIALYIYFIVLGVGLISLLRRDPTLQAVGYGAFAVGMLVIADSKTTWLRALPFIILAAALAAGAVILAVSVG
Ga0208345_102373	Ga0208345_1023731	F009423	MARFHELEGFVIVAGWGVLFLFGVGLFITRRDANRVYWALLTVLQVLLVIQLLAGLVLFAEGGRPAILHYLYGAVFPALVIGVCHLFTRGLEKPPYHLFFTIGAFFVFGLTARALMTGLGIG
Ga0208345_102437	Ga0208345_1024371	F081733	LTGPGRWYDCPVVHTMKDGDAGQAGFVRVVQGRLADPVRLAAMRDEVERTLRDRAPHVLGVTVAEHADGIGFTELTYLTSERETRAADRQMPVEMAVQLGTVRSYVEALEEVELREPVLVRPAVPVASP
Ga0208345_102506	Ga0208345_1025061	F047985	PVRFRTLVFRYLAVAFVLLAVVVIANPRQPDAAAGAASRPWDYQREQVDVQGRGVLNAYGRMSIRATAWLAKSSIERQRDMLRLSLFDALVGPGAAQSVGGWRARNADPLEAATKAALLGLIAWGVIRRPAWRNLTVAALLLIVATVTITRPYSTVSAATRPGVVVPNAMLTMVTRIAPDGAAGDQ
Ga0208345_102826	Ga0208345_1028261	F042550	VTILTSIFLGFLMLLQDAAASPEASSADHFTLTEMVKNM
Ga0208345_102940	Ga0208345_1029402	F025135	MAGQVTLTEQEARALSSLLGRASDRLEAYEEQTHQDRRLAEEIREAADDLVNRIGQGATT
Ga0208345_103016	Ga0208345_1030162	F024739	EYVQEWGEPTEDRSMGSFLEELNRLGEDGWEAVGITPRTHYDRGGGPGGWDSFTFVVLLKRLRPADDMMPRS
Ga0208345_103055	Ga0208345_1030551	F083819	IAFILSRAQDKLPELFLDLIVYLFATTLAVFVIGRMLAWRERRRWNAAKDWLHMILLETIDDLLKELLPAAVPREGVETEEELTVYQVTGERIHFGEIVAYSPLQLLVRPGEKDLQSHIFWYATDLGPLRYVEMAKEALSDARSQIRDSFGSSARLMDADITTMLISF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026680: Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN609 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences