3300026679: Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1094 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026679
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0055405 | Ga0208349
• Sample Name: Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1094 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 8606135
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Nunn, Colorado, USA
• Coordinates
  • Lat. (^o): 40.81667
  • Long. (^o): -104.76667
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007195	Metagenome	356	Y
F010545	Metagenome / Metatranscriptome	302	Y
F024197	Metagenome / Metatranscriptome	207	Y
F031245	Metagenome / Metatranscriptome	183	Y
F038847	Metagenome / Metatranscriptome	165	Y
F058823	Metagenome / Metatranscriptome	134	Y
F089253	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208349_100967	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	614
Ga0208349_101406	All Organisms → cellular organisms → Bacteria → Acidobacteria	552
Ga0208349_101426	All Organisms → cellular organisms → Bacteria → Acidobacteria	551
Ga0208349_101432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550
Ga0208349_101605	Not Available	533
Ga0208349_101831	All Organisms → cellular organisms → Bacteria → Acidobacteria	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208349_100967	Ga0208349_1009671	F010545	MSFLDRFRKKTEDEASRIERLLKTGRMADGRITDAFSDNEGRITQVTYTYELAGVQYESSQALSVRQQQHVADYSPGKQIIVR
Ga0208349_100967	Ga0208349_1009672	F024197	DIKDLQERTSDSDGTLAAALSNLDPTAYRPSADVAAVATEKSRHLRGAVIRNASLSSATDDTPSGGLSFTNYVLRLPGEDKITGTDDDWIARDGMVMKLSDVAKGEVGRSVSAGLQP
Ga0208349_101406	Ga0208349_1014061	F007195	RIDKRLRSGVNSIDLPYSQSATGWPGGRQIFNVIIRNAKDNSTLNWGAATFTTPKRAMMTSTKPAVDVYKQDETLSAVLRATGNLSGLQIRMSVSDDLGRILGTVSAPARGERTFTFPLKDFVGKFLLVTGELVNERGAIVDQVRAKPVMVVQNVRRIKEYTALVSFGGTKHYLQDAQMKMVR
Ga0208349_101426	Ga0208349_1014261	F058823	MADKYERYKGGNPVCNAFRFLCDASFAVLPRDAAYQLGDFEKNIWGGLRWFAEKSIERIDESLAAADWLRDEWRRRAETPPAQAAAGPEPL
Ga0208349_101432	Ga0208349_1014322	F089253	LSICKWEENPMNSHVAKLAIASSFGIALLGLYFIFTSTNTHLSLSACAMYIVGTVVGVMLLQSQE
Ga0208349_101605	Ga0208349_1016051	F038847	MKIQRRRHWHLRASFLIAFLLVISQLVSTITKAQGPSLPESDENDPTAALSQILRLERIEVPGGAELITVHARLAGIESN
Ga0208349_101831	Ga0208349_1018311	F031245	RVTKPAFVLKVKTTPILNISLKAEKAKMSEVAHELSKQLKTPVFLGPERQNETITIDFSELTLEPALQLLSPAVYVDYEVDTGSPAQAKALAIYFYDANQSEPPLTAVVNGSTQSLLVEGNTEDGVEPQTDEEKKKIEEEPLRVTFDNNSLSVKAKKQPLPLVLLKIGEEI