Metagenome / Metatranscriptome Family F089253

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089253
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	54 residues
Representative Sequence	MSSQVAKLAAAGSFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVLLMQSDK
Number of Associated Samples	83
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	79.82 %
% of genes near scaffold ends (potentially truncated)	27.52 %
% of genes from short scaffolds (< 2000 bps)	89.91 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (56.881 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (18.349 % of family members)
Environment Ontology (ENVO)	Unclassified (36.697 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.385 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.04% β-sheet: 0.00% Coil/Unstructured: 40.96%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00313	CSD	4.59
PF00239	Resolvase	3.67
PF04392	ABC_sub_bind	3.67
PF00589	Phage_integrase	1.83
PF02482	Ribosomal_S30AE	1.83
PF02469	Fasciclin	0.92
PF01650	Peptidase_C13	0.92
PF03781	FGE-sulfatase	0.92
PF12833	HTH_18	0.92
PF13278	Obsolete Pfam Family	0.92
PF00216	Bac_DNA_binding	0.92
PF01609	DDE_Tnp_1	0.92
PF07045	DUF1330	0.92
PF13340	DUF4096	0.92
PF01925	TauE	0.92
PF11324	DUF3126	0.92
PF13481	AAA_25	0.92
PF03401	TctC	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	3.67
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	3.67
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.67
COG1544	Ribosome-associated translation inhibitor RaiA	Translation, ribosomal structure and biogenesis [J]	1.83
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.92
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.92
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.92
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.92
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.92
COG5206	Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8	Posttranslational modification, protein turnover, chaperones [O]	0.92
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.92
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.92
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.92
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.92
COG2335	Uncaracterized surface protein containing fasciclin (FAS1) repeats	General function prediction only [R]	0.92
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	0.92
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
All Organisms	root	All Organisms	43.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
cellular organisms	root	All Organisms → cellular organisms	43.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	32.11 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28.44 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	13.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.50 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.75 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.75 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.83 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.92 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.92 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.92 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.75 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.83 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.92 %
Acidocella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella	0.92 %
Caenispirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Caenispirillum	0.92 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.93 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.83 %
Caenispirillum salinarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Caenispirillum → Caenispirillum salinarum	0.92 %
Acidocella aromatica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella → Acidocella aromatica	0.92 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.92 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.92 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.93 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.83 %
Caenispirillum salinarum AK4	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Caenispirillum → Caenispirillum salinarum → Caenispirillum salinarum AK4	0.92 %
Acidocella aromatica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella → Acidocella aromatica	0.92 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.92 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.92 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_191173_length_1059_cov_9.589235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1091	Open in IMG/M
2170459014\|G1P06HT01DV7B1	Not Available	523	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10000953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7106	Open in IMG/M
3300004114\|Ga0062593_102817034	Not Available	555	Open in IMG/M
3300004479\|Ga0062595_100123854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1438	Open in IMG/M
3300005181\|Ga0066678_10903227	Not Available	578	Open in IMG/M
3300005332\|Ga0066388_100123983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3113	Open in IMG/M
3300005332\|Ga0066388_102320968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	971	Open in IMG/M
3300005332\|Ga0066388_102905285	Not Available	876	Open in IMG/M
3300005332\|Ga0066388_103622537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	788	Open in IMG/M
3300005332\|Ga0066388_104026207	Not Available	749	Open in IMG/M
3300005332\|Ga0066388_104504548	Not Available	710	Open in IMG/M
3300005332\|Ga0066388_105850643	Not Available	622	Open in IMG/M
3300005434\|Ga0070709_11044336	All Organisms → cellular organisms → Bacteria → Proteobacteria	651	Open in IMG/M
3300005434\|Ga0070709_11156379	Not Available	621	Open in IMG/M
3300005454\|Ga0066687_10237313	Not Available	1011	Open in IMG/M
3300005467\|Ga0070706_101386415	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	644	Open in IMG/M
3300005518\|Ga0070699_100021766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	5526	Open in IMG/M
3300005549\|Ga0070704_100634462	Not Available	942	Open in IMG/M
3300005556\|Ga0066707_10492621	Not Available	795	Open in IMG/M
3300005560\|Ga0066670_11012616	Not Available	508	Open in IMG/M
3300005713\|Ga0066905_100178916	All Organisms → cellular organisms → Bacteria → Proteobacteria	1562	Open in IMG/M
3300005713\|Ga0066905_100644224	Not Available	902	Open in IMG/M
3300005713\|Ga0066905_100860424	Not Available	790	Open in IMG/M
3300005713\|Ga0066905_101235653	Not Available	669	Open in IMG/M
3300005764\|Ga0066903_100015156	All Organisms → cellular organisms → Bacteria	7798	Open in IMG/M
3300005764\|Ga0066903_100991228	Not Available	1534	Open in IMG/M
3300005764\|Ga0066903_101644005	Not Available	1220	Open in IMG/M
3300005764\|Ga0066903_102359403	Not Available	1028	Open in IMG/M
3300005764\|Ga0066903_103647345	Not Available	829	Open in IMG/M
3300005764\|Ga0066903_104377240	Not Available	754	Open in IMG/M
3300005764\|Ga0066903_108495501	Not Available	524	Open in IMG/M
3300005764\|Ga0066903_108919989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	508	Open in IMG/M
3300005983\|Ga0081540_1075009	Not Available	1547	Open in IMG/M
3300006046\|Ga0066652_101493763	Not Available	627	Open in IMG/M
3300006049\|Ga0075417_10691197	Not Available	524	Open in IMG/M
3300006163\|Ga0070715_10006714	All Organisms → cellular organisms → Bacteria → Proteobacteria	3930	Open in IMG/M
3300006175\|Ga0070712_101034096	Not Available	711	Open in IMG/M
3300006755\|Ga0079222_11937251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	576	Open in IMG/M
3300006794\|Ga0066658_10848736	Not Available	520	Open in IMG/M
3300006845\|Ga0075421_102114783	Not Available	596	Open in IMG/M
3300006852\|Ga0075433_10043207	All Organisms → cellular organisms → Bacteria → Proteobacteria	3911	Open in IMG/M
3300006854\|Ga0075425_102149056	Not Available	622	Open in IMG/M
3300006871\|Ga0075434_100562860	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300009156\|Ga0111538_11976202	Not Available	733	Open in IMG/M
3300010043\|Ga0126380_10245206	Not Available	1236	Open in IMG/M
3300010046\|Ga0126384_11019952	Not Available	754	Open in IMG/M
3300010047\|Ga0126382_10561029	Not Available	931	Open in IMG/M
3300010047\|Ga0126382_10626689	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300010048\|Ga0126373_11996615	Not Available	643	Open in IMG/M
3300010359\|Ga0126376_10042857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3156	Open in IMG/M
3300010366\|Ga0126379_11129406	Not Available	890	Open in IMG/M
3300010366\|Ga0126379_12477635	Not Available	618	Open in IMG/M
3300010371\|Ga0134125_12800399	Not Available	530	Open in IMG/M
3300010373\|Ga0134128_12291889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	595	Open in IMG/M
3300010376\|Ga0126381_104012334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	573	Open in IMG/M
3300010396\|Ga0134126_10469000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella → Acidocella aromatica	1455	Open in IMG/M
3300010396\|Ga0134126_11870556	Not Available	657	Open in IMG/M
3300010398\|Ga0126383_10415768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1385	Open in IMG/M
3300010398\|Ga0126383_12051892	Not Available	659	Open in IMG/M
3300010399\|Ga0134127_11134344	Not Available	847	Open in IMG/M
3300010863\|Ga0124850_1024683	Not Available	1931	Open in IMG/M
3300012199\|Ga0137383_10114508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1964	Open in IMG/M
3300012199\|Ga0137383_10766831	Not Available	704	Open in IMG/M
3300012200\|Ga0137382_10431158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	931	Open in IMG/M
3300012206\|Ga0137380_10499111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1072	Open in IMG/M
3300012208\|Ga0137376_10297208	Not Available	1401	Open in IMG/M
3300012209\|Ga0137379_10584969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1023	Open in IMG/M
3300012210\|Ga0137378_10061612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3390	Open in IMG/M
3300012211\|Ga0137377_11483555	Not Available	605	Open in IMG/M
3300012358\|Ga0137368_10455058	Not Available	831	Open in IMG/M
3300012359\|Ga0137385_10996396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Caenispirillum → Caenispirillum salinarum → Caenispirillum salinarum AK4	691	Open in IMG/M
3300012362\|Ga0137361_10431995	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300012582\|Ga0137358_10590685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	745	Open in IMG/M
3300012960\|Ga0164301_10998596	Not Available	658	Open in IMG/M
3300012961\|Ga0164302_10031370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2445	Open in IMG/M
3300012961\|Ga0164302_10130128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1448	Open in IMG/M
3300012961\|Ga0164302_10646923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	774	Open in IMG/M
3300012961\|Ga0164302_11313218	Not Available	585	Open in IMG/M
3300012984\|Ga0164309_10971032	Not Available	698	Open in IMG/M
3300015373\|Ga0132257_101268253	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300016341\|Ga0182035_11343783	Not Available	641	Open in IMG/M
3300018468\|Ga0066662_10548286	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300020579\|Ga0210407_11304147	Not Available	542	Open in IMG/M
3300020580\|Ga0210403_10838422	Not Available	729	Open in IMG/M
3300021168\|Ga0210406_10383109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1129	Open in IMG/M
3300021559\|Ga0210409_11447897	Not Available	563	Open in IMG/M
3300021560\|Ga0126371_10687389	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300025885\|Ga0207653_10026400	All Organisms → cellular organisms → Bacteria	1862	Open in IMG/M
3300025910\|Ga0207684_10461194	Not Available	1091	Open in IMG/M
3300025915\|Ga0207693_10451917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1004	Open in IMG/M
3300025929\|Ga0207664_10046397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3410	Open in IMG/M
3300026322\|Ga0209687_1254037	Not Available	546	Open in IMG/M
3300026524\|Ga0209690_1281937	Not Available	525	Open in IMG/M
3300026552\|Ga0209577_10268256	All Organisms → cellular organisms → Bacteria	1283	Open in IMG/M
3300026557\|Ga0179587_10089980	Not Available	1841	Open in IMG/M
3300026679\|Ga0208349_101432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300027873\|Ga0209814_10424832	Not Available	585	Open in IMG/M
3300027903\|Ga0209488_10920788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	611	Open in IMG/M
3300029636\|Ga0222749_10555348	Not Available	625	Open in IMG/M
3300031545\|Ga0318541_10562548	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300031682\|Ga0318560_10375773	Not Available	768	Open in IMG/M
3300031820\|Ga0307473_10291328	Not Available	1023	Open in IMG/M
3300031890\|Ga0306925_10160439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2421	Open in IMG/M
3300031954\|Ga0306926_11895576	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300032059\|Ga0318533_11231562	Not Available	547	Open in IMG/M
3300032180\|Ga0307471_100895270	Not Available	1055	Open in IMG/M
3300032205\|Ga0307472_101437079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	670	Open in IMG/M
3300032205\|Ga0307472_101548515	Not Available	649	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.83%
Host-Associated	Host-Associated	8.26%
Engineered	Engineered	0.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.83%
Plants	Host-Associated → Plants	8.26%
Solid Waste	Engineered → Solid Waste	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.42%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.83%
Grass	Engineered → Solid Waste → Grass	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.47%
Loam	Environmental → Terrestrial → Soil → Loam	29.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.92%
Composting	Engineered → Solid Waste → Grass → Composting	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.35%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.42%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.75%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.92%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	18.35%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.34%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.50%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.92%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
2170459014	Litter degradation PV2	Engineered	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026679	Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1094 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_00795730	2140918013	Soil	SANGRKIRMNSHVTKLATASSFGIALLGLYFIFTSTNTHLSLSACAMYIVGTVVGVLLSAVR
2PV_03235680	2170459014	Switchgrass, Maize And Mischanthus Litter	MSSQVAKLAAAGGFGIALLGLYFIFNSTSTQLSLSTCAMYIVGTVVGVY
AF_2010_repII_A1DRAFT_100009532	3300000597	Forest Soil	MNSYVAKLATASSFGIALLGLYFLFTSTNTHLSLSACVMYIVGTVVGVLLSTVR*
Ga0062593_1028170341	3300004114	Soil	MSSSQVAKLAAAGGFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVILMQSDK*
Ga0062595_1001238542	3300004479	Soil	MNSHVTKLATASSFGIALLGLYFIFTSTNTHLSLSACAMYIVGTVVGVLLSAVR*
Ga0066678_109032271	3300005181	Soil	MNSQVAKLAAAGSFGIALLGVYFIFNSTSAQLSFSACAMYIVGTVAGVILMQPDK*
Ga0066388_1001239834	3300005332	Tropical Forest Soil	AGSFGIALLGLYFMFNSTSTQLSLSACAMYIVGAVVGIILSQQSATG*
Ga0066388_1023209681	3300005332	Tropical Forest Soil	MSSQVAKLAAAGSFGIGLLGLYFIFNSTSTQLSLSACAMYIVGTVVGVLLMQSNK*
Ga0066388_1029052851	3300005332	Tropical Forest Soil	RKIRMNSHVAKLASASGFGIALLGLYFMFTSTNYHLSLSACAMYIVGTVVGVLWSTVR*
Ga0066388_1036225372	3300005332	Tropical Forest Soil	MNSHVAKLATASSFGIALLGLYFIFTSTNTHLSLSACAMYIVGTAAGVLLSTVR*
Ga0066388_1040262072	3300005332	Tropical Forest Soil	MGNHAIKVAMAGSFGIALLGLYFMFNSTSTQLSLSACAMYIVGAVVGIIL
Ga0066388_1045045482	3300005332	Tropical Forest Soil	MNSHVAKLASASGFGIALLGLYFIVTSTNTHLSLSACAMYIVGTVVGVLLS
Ga0066388_1058506431	3300005332	Tropical Forest Soil	MNGHVAKLAMGGSFGIALLGLYFIFNSTGTPMSLAACSMYIVGAVVGVILSWSAANA*
Ga0070709_110443362	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MGSHAIKLAMAGSFGIALLGLYFIFTSTSTPMSLSACAMYIVGAVVGALLSMSANE*
Ga0070709_111563791	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSSQVAKLAAAGSFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVMLMQSDK*
Ga0066687_102373132	3300005454	Soil	MNSHVAKLATASSFGIALLGLYFIFNSTNTHLSLSACAMYIVGTVVGVLLMQSDK*
Ga0070706_1013864153	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSSQVAKLAAAGSFGTALLGLYFIFNSTSAQLSLSACAMYIVGTVVGVILMQ
Ga0070699_1000217661	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSGQVAKLAAAGSFGIALLGVYFIFNSTSAQLSFSACAMYIVGTVVGVVLMQSDK*
Ga0070704_1006344622	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MSSSQVAKLAAAGGFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVMLLQSQE*
Ga0066707_104926211	3300005556	Soil	MSSSQVAKLAAAGGFGIALLGLYFIFNATSTQLSLSACAMYIVGTVVGVILMQSDK*
Ga0066670_110126162	3300005560	Soil	MAAMGCFGIALLGLYFMFVSTNTPTSLSACVMYIVGTVVGVMLLQSQE*
Ga0066905_1001789163	3300005713	Tropical Forest Soil	MSSHVAKLATAGSFGIALLGLYFIFNSTSVQLSLSACAMYIVGTVVGVILMQSDK*
Ga0066905_1006442241	3300005713	Tropical Forest Soil	MAGSFGVALLGLYLIFNSTSTPMSLSACAMYIVGAVVGAILSWSANA*
Ga0066905_1008604242	3300005713	Tropical Forest Soil	MSGQVAKLAAVGSFGIAVLGLYLILNSTNASMSLSACVMFIVGTVVGVLLLQPNK*
Ga0066905_1012356532	3300005713	Tropical Forest Soil	MSSQVAKLATAGSFGIALLGFYFIFNSTSTQMSLAACAMYIVGIVVGVVLLQSANE*
Ga0066903_1000151566	3300005764	Tropical Forest Soil	MGNHAVKVAMIGSFGIALLGLYFIFNSTDNAHLSFSGCAMYIVGTVVGIILSQQ*
Ga0066903_1009912284	3300005764	Tropical Forest Soil	MGNHAVKVAMAGCFGIALLGLYFMFNSTSTQLSLSACAMFIVGTVVGIILSQQSAAG*
Ga0066903_1016440051	3300005764	Tropical Forest Soil	MNSHVAKLASASGFGIALLGLYFIVTSTNTHLSLSACAMYIVGTVVGVLLSAVR*
Ga0066903_1023594033	3300005764	Tropical Forest Soil	MGNHAIKVAIAGSFGIALLGLYFMFNSTSTQLSLSACAMYIVGAVVGIILSQQSATR*
Ga0066903_1036473452	3300005764	Tropical Forest Soil	MNSHVAKLATASSFGIALLGLYFIFTSTDYHLSLSACAMYIIGTVVGVMLSWAANA*
Ga0066903_1043772402	3300005764	Tropical Forest Soil	GRKIRMNSHVAKLATASSFGIALLGLYFIFTSTNTHLSLSACAMYIVGTAAGVLLSTVR*
Ga0066903_1084955011	3300005764	Tropical Forest Soil	MNSHVAKLATASSFGIALLGLYFIFNSTNTHLSLSACAMYIVGTVAGVLLMK*
Ga0066903_1089199892	3300005764	Tropical Forest Soil	MGNHAIKVAMVGSFGIALLGLYFMFNSTSTQLSLSACAMYIVGAVVGIILSQQS
Ga0081540_10750092	3300005983	Tabebuia Heterophylla Rhizosphere	MNGHVAKLASASSFGIALLGLYFIFTSTNTHLSLSACAMYIVGTVVGVLLSTVR*
Ga0066652_1014937631	3300006046	Soil	MSSQVAKLAAAGSFGIALLGVYFIFNSTSAQLSFSACAMYIVGTVAGVILMQPDK*
Ga0075417_106911971	3300006049	Populus Rhizosphere	MSSQVAKLAAAGGFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVILMQSDK*
Ga0070715_100067144	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MAAMGCFGIALLGLYFVFVSTNTPTSLSACAMYIVGTVVGVMLLQSQE*
Ga0070712_1010340961	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MGSHATKLAAAGSFGIALLGLYFIINSTSTQLSLSACAMYIVGTVVGVLLMQSDK*
Ga0079222_119372512	3300006755	Agricultural Soil	MAAMGCFGIALLGLYFIFVSTNTPTSLSACAMYIVGTVVGVMLLQSQE*
Ga0066658_108487361	3300006794	Soil	MSSSQVAKLAAAGGFGIALLGLYFIFNSTSTQLSLPACAMYIVGTVVGVILMQPDK*
Ga0075421_1021147832	3300006845	Populus Rhizosphere	GCFGIALLGLYFIFVSTNTPTSLSACAMYIVGTVVGVMLLQSQE*
Ga0075433_100432072	3300006852	Populus Rhizosphere	VAKLAAAGGFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVILMQSDK*
Ga0075425_1021490561	3300006854	Populus Rhizosphere	GSHAIKLAMAGSFGIALLGLYFIFTSTSTPMSLSACAMYIVGAVVGALLSMSANE*
Ga0075434_1005628604	3300006871	Populus Rhizosphere	SSQVAKLAAAGGFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVILMQSDK*
Ga0111538_119762021	3300009156	Populus Rhizosphere	MSSSQVAKLAAAGGFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVMLMQSDK*
Ga0126380_102452062	3300010043	Tropical Forest Soil	MNGHVAKLATASSFGIALLGLYFIFTSANTHLSLSACAMYIVGTVVGVVLSWSANA*
Ga0126384_110199521	3300010046	Tropical Forest Soil	MGNHAVKVAMVGSFGIALLGLYFIFNSTNNTHLSFSGCAMYIVGTVVGIILSQQ*
Ga0126382_105610291	3300010047	Tropical Forest Soil	MSSQVAKLAAAGSFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVLLMQSNK*
Ga0126382_106266891	3300010047	Tropical Forest Soil	MSSHVAKLATAGSFGIALLGLYFIFNSTSVQLSLSACAMYIVGTVVGVI
Ga0126373_119966151	3300010048	Tropical Forest Soil	MNSHVAKLATASSFGIALLGLYFIFNSTNTHLSLSACAMYIVGTV
Ga0126376_100428576	3300010359	Tropical Forest Soil	MNSHVAKLATASSFGIALLGLYFLFTSTNYHLSLSACAMYIVGTVVGVILSWSANA*
Ga0126379_111294062	3300010366	Tropical Forest Soil	MGNHAVKVAMVGSFGIALLGLYFIFNSTNNTHLSFSGCAMYIVGTVVGI
Ga0126379_124776351	3300010366	Tropical Forest Soil	MNSHVAKLATASSFGIALLGLYFIFNSTNNTHLSLSACAMYIVGTVVGVLLMQPNK*
Ga0134125_128003992	3300010371	Terrestrial Soil	MSSQVAKLAAAGGFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVMLLQSQE*
Ga0134128_122918892	3300010373	Terrestrial Soil	MAAMGCFGIALLGLYFIFVSTNAPTSLSACAMYIVGTVVGVMLLQSQE*
Ga0126381_1040123341	3300010376	Tropical Forest Soil	MGNHAIKVAIAGSFGIALLGLYFMFNSTSTQLSLSACVMYIVGAVVGIILSQQSTTG*
Ga0134126_104690002	3300010396	Terrestrial Soil	MGSHAIKLAMAGSFGIALLGLYFIFTSTSTPMSLSACAMYIVGAVVGALLSISANE*
Ga0134126_118705561	3300010396	Terrestrial Soil	MSSQVAKLAAAGSFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVLLMQSDK*
Ga0126383_104157681	3300010398	Tropical Forest Soil	EEIRMSSHVAKLATAGSFGIALLGLYFIFNSTSVQLSLSACAMYIVGTVVGVILMQSDK*
Ga0126383_120518922	3300010398	Tropical Forest Soil	MNGHVAKLATASSFGMALLGLYFMFTSTNNTQLSLSACAMYIVGTVVGVLLLQSNK*
Ga0134127_111343441	3300010399	Terrestrial Soil	MNSHVTKLATASSFGIALLGLYFIFTSTNTHLSLSACAMYIVGTVVGVMLLQSQE*
Ga0124850_10246833	3300010863	Tropical Forest Soil	MNSHVAKLVTASSFGIALLGLYFMFTSTNTHLSLSACAMYIVGTVVGVLLSTVR*
Ga0137383_101145082	3300012199	Vadose Zone Soil	MISQVAKLVAAGSFGIALLGLYFIFNSTGTQMSFAACAMYIVGTVVGVILMQSGE*
Ga0137383_107668311	3300012199	Vadose Zone Soil	MSGQVAKLAAAGGFGIALLGVYFIFNSTSAQLSFSACAMYIVGTVAGVILMQPDK*
Ga0137382_104311582	3300012200	Vadose Zone Soil	MSGQVAKLAAAGSFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVMLMQSDK*
Ga0137380_104991112	3300012206	Vadose Zone Soil	MSGQVAKLAAAGSFGIALLGAYFIFNSTSAQLSFSACAMYIVGIVVGVILMQQSDK*
Ga0137376_102972083	3300012208	Vadose Zone Soil	MRLIAIASFGLAALGLFTIFNSTSTQISLAACAMYIVGSVLGVLLLQTES*
Ga0137379_105849692	3300012209	Vadose Zone Soil	MSGQVAKLAAAGSLGIALLGVYFIFNSTSAQLSFSACAIYIVGTVVGVVLMQSDK*
Ga0137378_100616122	3300012210	Vadose Zone Soil	MSSQVAKLVAAGSFGIALLGLYFIFNSTGTQMSFAACAMYIVGTVVGVILMQSGE*
Ga0137377_114835552	3300012211	Vadose Zone Soil	MSGQVAKLAAAGSLGIALLGVYFIFNSTSAQLSFSACAMYIVGTVVGVVLMQSDK*
Ga0137368_104550581	3300012358	Vadose Zone Soil	MSGQVAKLAAAGGFGIALLGLYFIFNSTSAQLSFSACAMYIVGTVAGVILMQPD*
Ga0137385_109963962	3300012359	Vadose Zone Soil	GSFGIALLGAYFIFNSTSAQLSFSACAMYIVGIVVGVILMQQSDK*
Ga0137361_104319952	3300012362	Vadose Zone Soil	MSGQVAKLAAAGSFGIALLGLYFIFNSTSTQLSLSACAMYIVGIVVGVLLMQSNK*
Ga0137358_105906852	3300012582	Vadose Zone Soil	QVAKLAAAGSFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVMLMQSDK*
Ga0164301_109985961	3300012960	Soil	MGGHAIKLAMAGSFGIALLGLYFIFTSTNTPMSLSACAMYIVGAVVGALLSMSANE*
Ga0164302_100313706	3300012961	Soil	ALLGLYFIINSTSTQLSLSACAMYIVGTVVGVLLMQSDK*
Ga0164302_101301281	3300012961	Soil	GFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVILMQSDK*
Ga0164302_106469231	3300012961	Soil	MAAMGCFVIALLGLYFIFVSTNSPTSLSACAMYIVGTVVGVMLLQSQE
Ga0164302_113132181	3300012961	Soil	MSSQVAKLAAAGGFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVILMQPDK*
Ga0164309_109710322	3300012984	Soil	MSSQVAKLAAAGGFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVMLMQSDK*
Ga0132257_1012682531	3300015373	Arabidopsis Rhizosphere	MSSQVAKLAAAGGFGIALLGLYFIFVSTNTPTSLSACAMYIVGTVVGVMLLQSQE*
Ga0182035_113437832	3300016341	Soil	MSSQVAKLATAGSFGIALLGLYFIFNSTSIQLSLSACAMYIVGTVVGVILMQS
Ga0066662_105482862	3300018468	Grasslands Soil	MSSSQVAKLAAAGGFGIALLGLYFIFNSTSTQLSLSACAMYIVGIVVGVLLMQSNK
Ga0210407_113041471	3300020579	Soil	MGSHATKLAAAGSFGIALLGLYFIINSTSTQLSLSACAMYIVGTVVGVLLMQSDK
Ga0210403_108384222	3300020580	Soil	MSSRVAKLAAAGSFGIALLGLYFIINSTSTQLSLSACAMYIVGTVVGVLLMQSDK
Ga0210406_103831093	3300021168	Soil	MSSRVAKLAAAGSFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVMLMQSDK
Ga0210409_114478972	3300021559	Soil	MSSQVAKLAATGGFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVILMQPDK
Ga0126371_106873892	3300021560	Tropical Forest Soil	MSSHVAKLATAGSFGIALLGLYFIFNSTSIQLSLSACAMYIVGTVVGVILMQSDK
Ga0207653_100264002	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MSSSQVAKLAAAGGFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVILMQSDK
Ga0207684_104611941	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSGQVAKLAAAGSFGIALLGVYFIFNSTSAQLSFSACAMYIVGIVVGVILMQQSDK
Ga0207693_104519172	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MAAMGCFGIALLGLYFIFVSTNAPTSLSACAMYIVGTVVGVMLLQSQE
Ga0207664_100463974	3300025929	Agricultural Soil	MAAMGCFGIALLGLYFVFVSTNTPTSLSACAMYIVGTVVGVMLLQSQE
Ga0209687_12540371	3300026322	Soil	MNSHVAKLATASSFGIALLGLYFIFNSTNTHLSLSACAMYIVGTVVGVLLMQSDK
Ga0209690_12819371	3300026524	Soil	MNSQVAKLAAAGSFGIALLGVYFIFNSTSAQLSFSACAMYIVGTVAGVILMQPDK
Ga0209577_102682562	3300026552	Soil	MSSLVAKLAAAGSFGIALLGLYFIVNSTSTQLSLSACAMYIVGTVVGVMLMQSDK
Ga0179587_100899801	3300026557	Vadose Zone Soil	MSSLVAKLAAAGSFGIALLGLYFIVNSTSTQLSLSACAMYIVGTVVGVVLMQSDK
Ga0208349_1014322	3300026679	Soil	LSICKWEENPMNSHVAKLAIASSFGIALLGLYFIFTSTNTHLSLSACAMYIVGTVVGVMLLQSQE
Ga0209814_104248321	3300027873	Populus Rhizosphere	MSSQVAKLAAAGGFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVILMQSDK
Ga0209488_109207881	3300027903	Vadose Zone Soil	AAGGFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVMLMQSDK
Ga0222749_105553481	3300029636	Soil	MSSQVAKLAAAGAFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVILMQSDK
Ga0318541_105625481	3300031545	Soil	MSSQVAKLAAAGSFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVLLMQSNK
Ga0318560_103757732	3300031682	Soil	MSSQVAKLATAGSFGIALLGLYFIFNSTSIQLSLSACAMYIVGTVVGVILMQSNK
Ga0307473_102913281	3300031820	Hardwood Forest Soil	MSSQVAKLAAAGGFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVMLLQSQE
Ga0306925_101604395	3300031890	Soil	MSSQVAKLAAAGSVGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVLLMQSNK
Ga0306926_118955761	3300031954	Soil	SFGVALLGLYLIFNSTSTPMSLSACAMYIVGAVVGAILSWSANA
Ga0318533_112315621	3300032059	Soil	QVAKLATAGSFGIALLGLYFIFNSTSIQLSLSACAMYIVGTVVGVILMQSNK
Ga0307471_1008952702	3300032180	Hardwood Forest Soil	MSSQVAKLAAAGGFGIALLGLYFIFNSTSTQLSLSACAMYIVGIVVGVLLMQSDK
Ga0307472_1014370792	3300032205	Hardwood Forest Soil	MAAMGCFGIALLGLYFIFVSTNTPTSLSACAMYIVGTVVGVMLLQS
Ga0307472_1015485151	3300032205	Hardwood Forest Soil	EIRMSSQVAKLAAAGGFGIALLGLYFIFNSTSTQLSLSACAMYIVGTVVGVLLMQSNN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089253

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences