Sample 3300026674

Overview

Basic Information
IMG/M Taxon OID	3300026674 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053063 \| Gp0054369 \| Ga0207924
Sample Name	Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN356 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	7183270
Sequencing Scaffolds	11
Novel Protein Genes	11
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	grassland biome → land → grassland soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Chapel Hill, North Carolina, USA
Coordinates	Lat. (^o)	35.913	Long. (^o)	-79.056	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000810	Metagenome / Metatranscriptome	882	Y
F005544	Metagenome / Metatranscriptome	397	Y
F016050	Metagenome / Metatranscriptome	250	Y
F022560	Metagenome / Metatranscriptome	214	Y
F024895	Metagenome / Metatranscriptome	204	Y
F027644	Metagenome / Metatranscriptome	194	Y
F039700	Metagenome / Metatranscriptome	163	Y
F055938	Metagenome	138	Y
F078268	Metagenome	116	Y
F089322	Metagenome / Metatranscriptome	109	Y
F099559	Metagenome	103	Y

Family

Category

Number of Sequences

3D Structure?

F000810

Metagenome / Metatranscriptome

882

F005544

Metagenome / Metatranscriptome

397

F016050

Metagenome / Metatranscriptome

250

F022560

Metagenome / Metatranscriptome

214

F024895

Metagenome / Metatranscriptome

204

F027644

Metagenome / Metatranscriptome

194

F039700

Metagenome / Metatranscriptome

163

F055938

Metagenome

138

F078268

Metagenome

116

F089322

Metagenome / Metatranscriptome

109

F099559

Metagenome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207924_100197	Not Available	853	Open in IMG/M
Ga0207924_100313	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	740	Open in IMG/M
Ga0207924_100321	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
Ga0207924_100521	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
Ga0207924_100646	Not Available	611	Open in IMG/M
Ga0207924_100709	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	591	Open in IMG/M
Ga0207924_100760	Not Available	577	Open in IMG/M
Ga0207924_100795	Not Available	570	Open in IMG/M
Ga0207924_100814	Not Available	566	Open in IMG/M
Ga0207924_100863	Not Available	556	Open in IMG/M
Ga0207924_100877	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207924_100197

Not Available

853

Open in IMG/M

Ga0207924_100313

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

740

Open in IMG/M

Ga0207924_100321

All Organisms → cellular organisms → Bacteria

737

Open in IMG/M

Ga0207924_100521

All Organisms → cellular organisms → Bacteria

653

Open in IMG/M

Ga0207924_100646

Not Available

611

Open in IMG/M

Ga0207924_100709

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

591

Open in IMG/M

Ga0207924_100760

Not Available

577

Open in IMG/M

Ga0207924_100795

Not Available

570

Open in IMG/M

Ga0207924_100814

Not Available

566

Open in IMG/M

Ga0207924_100863

Not Available

556

Open in IMG/M

Ga0207924_100877

All Organisms → cellular organisms → Bacteria

553

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207924_100197	Ga0207924_1001973	F039700	MLYEVVILETPTKKEAEEGKSERLVFGPKAIIGNDPQSAAIAAVLDGNNGEKIDVDRSRMKVLIRPFA
Ga0207924_100313	Ga0207924_1003132	F027644	MNIAELKGEKTVKTLAKRLLAEPSKKTKKTTNAEMEAALLRLNPQLNQIRELKEGTPIVVPVEFPLDGDESFTPSRGLTEALLEQARDAVTKLRAVVKERVQNSAEEADRVQTWLKSAQAKEFLRQSPELKESFSSAATAAKTLAKEQAEAFSAEENALGKIKSQLTAFRVK
Ga0207924_100321	Ga0207924_1003212	F005544	MPSGGKKKHKKPSRKKSELDSALAQVGDESSAAAIQEFQDLLGEAKGDTSELVRQNAEELERRLVLLKNHEIDKED
Ga0207924_100521	Ga0207924_1005211	F016050	MQLKANVEDEDRAERGKNDTGGMKSSARRRKQVGNRTADDRSDDAERDGP
Ga0207924_100646	Ga0207924_1006462	F055938	KWVRVDKLQPGDRVQDAKGNIVTIKEASPGIFPDSILITLQDADPDFLYLESDTKVFVE
Ga0207924_100709	Ga0207924_1007091	F089322	MVNGVDALSITWMILTQARWLKVRFKMTMRQLARWCDGFIRWLSKSSVRIGRVEPRR
Ga0207924_100760	Ga0207924_1007601	F078268	RVSGVALDLEMGVPCYQVEDEEGRIHLLLQLPIGEKNENRWCLWRPHRVVFDSRSIFDVALIDG
Ga0207924_100795	Ga0207924_1007952	F024895	MSTTNQMNEINNLSSEFTDEFLHTQADAGHHLLGQESFEHRPTQEEMKALALEGVSLLFIDCLK
Ga0207924_100814	Ga0207924_1008141	F022560	WRQGARSGAYLNRYVTDEQRSRRPIFIATLRAVASWPFFRVARSLRIHSDMLVARALKNSQLIRQLPGESHAIYGTGLGQSDEN
Ga0207924_100863	Ga0207924_1008631	F099559	LPLPGDPPARYRSPRFHWPKISPSRLRDGVKPAIAGTVALLICQWFNPPGAAAIPLTALALTFMNKNFIGGKGDRGALQSAFQVSVGGLIFVILVFWISPALSNYGMMNLFLFTELFAFGYWSAALGGQNIHAGAVMFFIIASVGLDAEKPVAVQTVFGSYFGIVLPIFMAAIVGRLFWPVLPEA
Ga0207924_100877	Ga0207924_1008771	F000810	MKSKHSFSRNVLLMLVFGCAIVISSVAQGGPPPAYLRSNHHFPPGLLVVDRTPNFGWNLGFNLLIDGRPAGSVAQGHSYSTWLPAGPHVLTVHKVPATGFTAPTSTTVNIQPGAEHLYTAMWDSGLVYLQPGGVLLTPGAYWQNHGD

Scaffold ID

Protein ID

Family

Sequence

Ga0207924_100197

Ga0207924_1001973

F039700

MLYEVVILETPTKKEAEEGKSERLVFGPKAIIGNDPQSAAIAAVLDGNNGEKIDVDRSRMKVLIRPFA

Ga0207924_100313

Ga0207924_1003132

F027644

MNIAELKGEKTVKTLAKRLLAEPSKKTKKTTNAEMEAALLRLNPQLNQIRELKEGTPIVVPVEFPLDGDESFTPSRGLTEALLEQARDAVTKLRAVVKERVQNSAEEADRVQTWLKSAQAKEFLRQSPELKESFSSAATAAKTLAKEQAEAFSAEENALGKIKSQLTAFRVK

Ga0207924_100321

Ga0207924_1003212

F005544

MPSGGKKKHKKPSRKKSELDSALAQVGDESSAAAIQEFQDLLGEAKGDTSELVRQNAEELERRLVLLKNHEIDKED

Ga0207924_100521

Ga0207924_1005211

F016050

MQLKANVEDEDRAERGKNDTGGMKSSARRRKQVGNRTADDRSDDAERDGP

Ga0207924_100646

Ga0207924_1006462

F055938

KWVRVDKLQPGDRVQDAKGNIVTIKEASPGIFPDSILITLQDADPDFLYLESDTKVFVE

Ga0207924_100709

Ga0207924_1007091

F089322

MVNGVDALSITWMILTQARWLKVRFKMTMRQLARWCDGFIRWLSKSSVRIGRVEPRR

Ga0207924_100760

Ga0207924_1007601

F078268

RVSGVALDLEMGVPCYQVEDEEGRIHLLLQLPIGEKNENRWCLWRPHRVVFDSRSIFDVALIDG

Ga0207924_100795

Ga0207924_1007952

F024895

MSTTNQMNEINNLSSEFTDEFLHTQADAGHHLLGQESFEHRPTQEEMKALALEGVSLLFIDCLK

Ga0207924_100814

Ga0207924_1008141

F022560

WRQGARSGAYLNRYVTDEQRSRRPIFIATLRAVASWPFFRVARSLRIHSDMLVARALKNSQLIRQLPGESHAIYGTGLGQSDEN

Ga0207924_100863

Ga0207924_1008631

F099559

LPLPGDPPARYRSPRFHWPKISPSRLRDGVKPAIAGTVALLICQWFNPPGAAAIPLTALALTFMNKNFIGGKGDRGALQSAFQVSVGGLIFVILVFWISPALSNYGMMNLFLFTELFAFGYWSAALGGQNIHAGAVMFFIIASVGLDAEKPVAVQTVFGSYFGIVLPIFMAAIVGRLFWPVLPEA

Ga0207924_100877

Ga0207924_1008771

F000810

MKSKHSFSRNVLLMLVFGCAIVISSVAQGGPPPAYLRSNHHFPPGLLVVDRTPNFGWNLGFNLLIDGRPAGSVAQGHSYSTWLPAGPHVLTVHKVPATGFTAPTSTTVNIQPGAEHLYTAMWDSGLVYLQPGGVLLTPGAYWQNHGD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026674: Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN356 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences