Sample 3300026653

Basic Information
IMG/M Taxon OID	3300026653 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053063 \| Gp0055314 \| Ga0208846
Sample Name	Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1105 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300026653 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0053063 | Gp0055314 | Ga0208846

Sample Name

Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1105 (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	6392998
Sequencing Scaffolds	33
Novel Protein Genes	36
Associated Families	36

Dataset Contents

Total Genome Size

6392998

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4
All Organisms → cellular organisms → Bacteria	3
Not Available	19
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales → Thermoflexaceae → Thermoflexus → Thermoflexus hugenholtzii	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

All Organisms → cellular organisms → Bacteria

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales → Thermoflexaceae → Thermoflexus → Thermoflexus hugenholtzii

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Ecosystem Assignment (GOLD)

Name

Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	grassland biome → land → fertilized soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

grassland biome → land → fertilized soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Nunn, Colorado, USA
Coordinates	Lat. (^o)	40.81667	Long. (^o)	-104.76667	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Nunn, Colorado, USA

Coordinates

Lat. (^o)

40.81667

Long. (^o)

-104.76667

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003951	Metagenome / Metatranscriptome	460	Y
F006607	Metagenome / Metatranscriptome	369	Y
F008694	Metagenome / Metatranscriptome	329	Y
F009288	Metagenome / Metatranscriptome	320	Y
F009289	Metagenome / Metatranscriptome	320	Y
F010122	Metagenome / Metatranscriptome	308	Y
F011582	Metagenome / Metatranscriptome	289	Y
F011886	Metagenome / Metatranscriptome	286	Y
F012064	Metagenome / Metatranscriptome	284	Y
F012394	Metagenome / Metatranscriptome	281	Y
F013942	Metagenome / Metatranscriptome	267	Y
F018075	Metagenome / Metatranscriptome	237	N
F021390	Metagenome / Metatranscriptome	219	N
F025135	Metagenome / Metatranscriptome	203	Y
F028653	Metagenome / Metatranscriptome	191	Y
F030868	Metagenome / Metatranscriptome	184	Y
F034981	Metagenome / Metatranscriptome	173	Y
F035119	Metagenome / Metatranscriptome	173	Y
F036136	Metagenome	170	Y
F037920	Metagenome / Metatranscriptome	167	Y
F042883	Metagenome / Metatranscriptome	157	Y
F045355	Metagenome / Metatranscriptome	153	Y
F047985	Metagenome / Metatranscriptome	149	Y
F050764	Metagenome	145	N
F055004	Metagenome / Metatranscriptome	139	Y
F065500	Metagenome	127	N
F067962	Metagenome / Metatranscriptome	125	Y
F069922	Metagenome	123	Y
F073205	Metagenome / Metatranscriptome	120	N
F076979	Metagenome	117	Y
F085295	Metagenome / Metatranscriptome	111	Y
F087921	Metagenome / Metatranscriptome	110	Y
F092685	Metagenome / Metatranscriptome	107	N
F103545	Metagenome / Metatranscriptome	101	N
F105483	Metagenome / Metatranscriptome	100	Y
F105841	Metagenome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208846_100082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1956	Open in IMG/M
Ga0208846_100110	All Organisms → cellular organisms → Bacteria	1837	Open in IMG/M
Ga0208846_100152	Not Available	1667	Open in IMG/M
Ga0208846_100340	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
Ga0208846_100365	All Organisms → cellular organisms → Bacteria	1279	Open in IMG/M
Ga0208846_100390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1257	Open in IMG/M
Ga0208846_100519	Not Available	1132	Open in IMG/M
Ga0208846_100552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1111	Open in IMG/M
Ga0208846_100583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1091	Open in IMG/M
Ga0208846_100611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1067	Open in IMG/M
Ga0208846_100685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1021	Open in IMG/M
Ga0208846_100752	Not Available	978	Open in IMG/M
Ga0208846_101050	Not Available	838	Open in IMG/M
Ga0208846_101089	Not Available	826	Open in IMG/M
Ga0208846_101150	Not Available	799	Open in IMG/M
Ga0208846_101213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	779	Open in IMG/M
Ga0208846_101270	Not Available	755	Open in IMG/M
Ga0208846_101306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales → Thermoflexaceae → Thermoflexus → Thermoflexus hugenholtzii	744	Open in IMG/M
Ga0208846_101427	Not Available	712	Open in IMG/M
Ga0208846_101433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	710	Open in IMG/M
Ga0208846_101591	Not Available	668	Open in IMG/M
Ga0208846_101649	Not Available	652	Open in IMG/M
Ga0208846_101679	Not Available	646	Open in IMG/M
Ga0208846_101763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	628	Open in IMG/M
Ga0208846_101951	Not Available	597	Open in IMG/M
Ga0208846_102085	Not Available	576	Open in IMG/M
Ga0208846_102144	Not Available	567	Open in IMG/M
Ga0208846_102462	Not Available	525	Open in IMG/M
Ga0208846_102468	Not Available	525	Open in IMG/M
Ga0208846_102531	Not Available	517	Open in IMG/M
Ga0208846_102643	Not Available	503	Open in IMG/M
Ga0208846_102660	Not Available	502	Open in IMG/M
Ga0208846_102671	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208846_100082	Ga0208846_1000821	F103545	MFIRILRGQAYDGAATLAEIARWRQELGAGVLGWQRLTAGIGDAGELVLALRYDTEAAARRDQDRPELAAWQVSAERHLTGPGRWYECPVVHTMKDGDAGEAGFVRVVQGRLADPV
Ga0208846_100110	Ga0208846_1001103	F073205	DPVPPPAAAALATLRRTIGPGVRAGLLRAGYLLLALFVGLLLFGPRDEAPLPQSEQTKLAVGLWPLFGIAFAFLAVLNQRVVLGGERRVRQAAAVSHRVASAHFPICLVIGLLQASGLVLASLVVEFRLMAGLSILLALADPYLIGMSNALYLRTRADLEPVDAGDGSLRPPRR
Ga0208846_100152	Ga0208846_1001523	F085295	MNGLSAQGLADLAGVTEAEIRRLVDLGILVARDGAGPFLETDVQKVRLATACEQAGLPMDGIAAAVQQGRLSFAFLEAAPYRRWAVRSARTYRQVSQEAGVPLELLGSFLEAIGFARMAPDELIREDELEVVPLLQLGLSSGILDQVWSTRLGRGYAEGMRLIAGVEKDVWQARLMAPLLASGADEQTARERASQLVADLNFTSLYDRALLAAYRRQQELAWTEQLVE
Ga0208846_100340	Ga0208846_1003403	F009289	MPEPTEDLSPTDRELLRRAELALSQLNNRHGLEPDQSATLTAIRLRLEGKSRASLDDLLTAGKDLGGKDPLTEAMARGQQGPSFDDLVAGAEKKPKKSLDDLL
Ga0208846_100365	Ga0208846_1003652	F012064	MRLRRIVAVLGLAAALSLPAAASAESKRHVGLHDMTCTSIMAMGKGLAPDAAVQLTLTDRDNGTTLAGQTVRTSAKGEFMAKLPARLNKVLSIRLTVSRPDGSKVAFADHVMAKGAPMCDLPFTGPSRGVALLLTGTTAIALGLVLLASAARYERVLALVRPRRD
Ga0208846_100390	Ga0208846_1003901	F092685	VPAHVLVLDAAEGIGPWARDALAHAGLACALVKENVEALRSVDAQWPALVVVPLDEVERWAPVLGRLSDGPTTVPVLGMASRDA
Ga0208846_100519	Ga0208846_1005191	F037920	VTFRARLTLTYLVLLTTALSGFGLWVYAYLDRNLHREFYGSVERQSNQLARVLASDYDAAATQVGPTLDQLTNEQERDTYIVVETRKGRELGLDIVAKRPKDALGGVDLPIVPPGQVVNVRPEANNLGLPLAVYATRFEASKAIPRNHPAAPDQPREIVRLQGQVTVARSLAGVERSLRLLRTILVAGG
Ga0208846_100552	Ga0208846_1005522	F012394	VGETSAATAREVEETRRQMEDKVAKLSERAPEEARKLMKRVAFGVLSAVVVLLARKLVDKLWERATGELPPTKVERE
Ga0208846_100555	Ga0208846_1005551	F105483	MFRHVVLLRRDPSLGLALRALLHGTGRVTELPTLQAWSTLPPDDIDAVVIDLPVPRRKQAVDLVRSRFNGRLVLVLEPTDDPGSVPPDRGCSVVQRPFEIVELWHLVTTDPTPSGSRAGGRARAEPAGA
Ga0208846_100583	Ga0208846_1005832	F011886	VPLALPTGPLYGSGMELEVGPFDPALHIRSRDHYEAVRREAQLLSLAPEAAPARFEELIDRLSRQFPPSPVDEVADRAYLAREPSFAVRHDLPDELVPAALAACDELEELLDEFDRWANAEGVQLLEAPEDIKQYRKAYLDQVRAQLQKANG
Ga0208846_100611	Ga0208846_1006111	F009288	GGVDVAAALWGGIIGAIVAATVYAGFLGLRWTRLDLLRFEGGLVLRERTNMVYIYGVTVQVVAGALLALGYRQVFQQLDSATFVGWGALLGLVQGVLAVVLLPVFGMLNRNIRAGDEPPPGPLGRAYGGLTPLALLVASVVFGTWVGIVLLP
Ga0208846_100685	Ga0208846_1006852	F025135	MAGQVTLTEQEARALSSLLDRASDRLEAYEEQTHQDRRLAEEIREAADDLVNRIGQGATT
Ga0208846_100752	Ga0208846_1007521	F105841	AEAGSRGLTENNARFGVMRIMRAVQQTQLSAGGTAPVVRLQGRYQLPGAAAPVTVVRLRFNPVTVERGDFDDRRYLEAFELADAAVIHPAFRG
Ga0208846_101050	Ga0208846_1010501	F011582	MGREEPLRISCDDCPGGSECRDCLVEFFLGERNARVVRLDNDPIVPTPDLDPDLQAAFDTLTAHGLQPKVVAHRHHNGSARAS
Ga0208846_101089	Ga0208846_1010891	F018075	MSSKGRAVQGARTQSSSGKTGQKSFPLGRVCRQCGDPLSQYNPGPNCWNHTVEFPWRGPTAKPKP
Ga0208846_101113	Ga0208846_1011132	F065500	VATAGRPLTPSEVETRTFQQGAPGYLPAHVDLFLAKAARALAGRDGEALTRWDVLRQRFPLGPRGYATSEVDAFLVRLAAQFPDPDPAAQQEILRKLQER
Ga0208846_101150	Ga0208846_1011501	F047985	VRSRVGLTQGAVRIPAAAPLDRDRVRFRTLLFRYLAVGFILLATVLVANPGAPTAPGDPDPWDYQREQVDVQGRGVLNAYGRMSIRATAWLAKSSIERQRDMLRLSLFDALVGPGAAQSVGGWRARNADPLEAATKAALLGLIAWGVIRRPAWRNLTVAALLLIVATVTITRPYSTVSAATRPGVVVP
Ga0208846_101213	Ga0208846_1012132	F013942	LAAFACFLLAAVSVRARWAGRVNLIGLGLACWVFIPLVAALRRVS
Ga0208846_101270	Ga0208846_1012701	F006607	VIAVTQPHHWPFEQPAQGTLRPWYLTATGYLEVLFSDPEEAQRAQRGLLQHQIPQEEFRLYESEEILRILSQLQEERSIVAKAVAALVADPDAKQRFLANAWTGGAALWLVARTRDRADHLVQLLADYDYSSLRYYGDHGVTDVQRDADQHHSRAELKTA
Ga0208846_101306	Ga0208846_1013061	F067962	RSRVSDFGWGLVLLGAYVVLVVLARWIYIARPNIVWTSVQAGAMAKRLSFQVEQRPSSNGKGSLSPATLQRLVEELKQDIHQETPEKGHTGVLGWNGSHQIAQWVLMHEAERLALPSLGHAQLVARLERALGQLHELPQPRREAWEDVIRDLLASKEEADTGRLNRAYRAYLDELLGEIYEASNGNAIQLAGLYNRATWVILVALLPLAVLAGLGYGVLLVAGAIGGLVSRMQRLVFSTRIPITYGS
Ga0208846_101427	Ga0208846_1014271	F035119	LFIDAAFLGFPVLSTMLNGGAPPVVALALIAGLIAAGVGLLQGRRWGWYLAMVVVGLSVLLDLLRGNLLALVIDALIIFLLTRPATRAKFGVR
Ga0208846_101431	Ga0208846_1014311	F028653	VVVERQVVLLSGDAGLALTMRALVSNGDRIAHYESAAALAEWSTPKVAAVILDSQPHVRRLSYKHVRERYDGPLIVLLDKDERRPDLPPDGARRYLHRPFEVAELSRLLDTPVPELGSLEAAIIAAWSRHATAEPAAPVRPARSSQVPAWRPSRPRRVRVWAATIIALMGLLLVLGLSDRGSCAPSCTQLGGGVAGAAETETPLTSTPATG
Ga0208846_101433	Ga0208846_1014331	F010122	MNRFEDAVARELQVRVRARTRSVRALARWAAAALPPGALVADGVALVTERLGDGDPDALAAQVMAETPDRFGRNWESGPAH
Ga0208846_101591	Ga0208846_1015911	F008694	GAGLPQGWTAFTNRRGANRVGVPPDFRARTRQSYNATVVEERGGDGRVFTVRSTDPANPLPQASREYRAYAARTFDGFREIRYAEDQTYAGRPGAVVFEYQAVRDGRRVHVSHINFKGRTWGYNVEFIAPAGDWDASRTLARQFEQAFQPLG
Ga0208846_101649	Ga0208846_1016492	F021390	EVQIPGMQDIQKGSEVKVRKPGQGERGVWRVVGEVANSGPEDPAYDLTNVVSGRRRIFRASRLTVVRAARPGRR
Ga0208846_101679	Ga0208846_1016792	F036136	MWVDAEAEIRTRMRDRIREAEQERQAAQARASRAGAHRPSAGYGWRLRQAAGFGLVRTGLRLLDGGRV
Ga0208846_101763	Ga0208846_1017632	F030868	MGRKRRDEDQPPTENGHRSHRGRRLAVLLALAGGAVYLVRRNQRKAELDEGIWHEAPAPASTA
Ga0208846_101951	Ga0208846_1019511	F050764	GVRVYRYLFDHLPFLSLQRVPERLMVVTALVLVLLAVTALDVAGELLARRRRALVAAAVVLSLATVALLGDYRVSRNRLEPDRADNKVVAALRSAGDGAGPILGVPIMAQAVTWNSATTYLSAQSRRRTLNAYNQTPAPWQAERVARLDPLNRGQAAPAALEVLRQTGTRQVVVIDEPRVFAPGEWQATVDALVASGH
Ga0208846_102085	Ga0208846_1020851	F042883	VGLSRPVGQKRWGVRSLLFLGLAAASIILSNWMRMTGNTDVILLTFIGTVVGLVGATVCTVRGLRAWGGRLP
Ga0208846_102144	Ga0208846_1021441	F034981	MVIHYPPARLRSNSDQPTAITNVLVATSGSSHRTGEIPLGTPTCSARSRHGRWALYPSGEEVVVVWPGGAV
Ga0208846_102462	Ga0208846_1024621	F045355	LRRDEAGTRLLEAPRSTMTARALDMPPLPSGLQPTSIAVSPDGAFVLAVADHPDRKVEDAEHVPGGQLFLGQFGRNGVVSWSTRPIAPGLGRVYNPIWVDPVTVAFVGETDSKDDLGRLWTIKSDGWDPTAVLDDSDVPMGDIGNNLTVDPTGRAFVVTARSGSGGSLWAVNRQ
Ga0208846_102468	Ga0208846_1024682	F087921	RAEELRLYQSEELQRNLSRLQQERSLLARAVAALVADPDAKRRFLDNAQAGGAAMWLVAPTKDRADHLVGLLADYGYSSLRYYGQEGVSDLQRDAD
Ga0208846_102531	Ga0208846_1025312	F076979	VGTWHDLDVGRPITAPLERCAELLGIDLATVRELAAKVEPYIRADGTEV
Ga0208846_102643	Ga0208846_1026431	F003951	MGTDDSGTATPTLQREVCDKCGSRMELESSAYGFERWKCPKCQQIVGIDRDPEVGSRFQIARGQPWNYSPDAFRN
Ga0208846_102660	Ga0208846_1026601	F055004	GAGEEPLEMLRRREQLLTVMADEVCQARDEVLTIVNTSWEPTDCPGMRERLAAGVQFRTVFDRGSLDHGPHRDWVAAFGGEPGFEVRVVDRVETLYLLVDRYVVLLNLTVPGSDSPGSHAESLLMRHAGLGQILHDAFERTWRRGVPFDQALAGDGEPALVGATTSA
Ga0208846_102671	Ga0208846_1026711	F069922	KSCIVVLSLLCLFLFYRMCLALYDQRTGLLATVAFALCPTLLKWHFQVRGYSWYFLSIPILTMLFASIDSAPDPKRKTLLFFGLASGVSIWSLELALPLMGALWMLLILRRRLSPNNAAAALAGLVTGYAPAIVFNFTHHFSNWRYLIIERPAGGLSSLFHLSTLG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026653: Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1105 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences