Metagenome Family F076979

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076979
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	43 residues
Representative Sequence	VGTWHDPDLGRPIAAPLERCAELLGVDLATIRAAAANVEPY
Number of Associated Samples	71
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	17.24 %
% of genes near scaffold ends (potentially truncated)	87.18 %
% of genes from short scaffolds (< 2000 bps)	82.05 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.282 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.786 % of family members)
Environment Ontology (ENVO)	Unclassified (30.769 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.316 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.64% β-sheet: 2.90% Coil/Unstructured: 72.46%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF00589	Phage_integrase	5.13
PF02796	HTH_7	3.42
PF12728	HTH_17	2.56
PF03091	CutA1	1.71
PF04075	F420H2_quin_red	1.71
PF02371	Transposase_20	1.71
PF00872	Transposase_mut	1.71
PF01161	PBP	1.71
PF03704	BTAD	1.71
PF00211	Guanylate_cyc	0.85
PF13419	HAD_2	0.85
PF05988	DUF899	0.85
PF00239	Resolvase	0.85
PF02517	Rce1-like	0.85
PF13632	Glyco_trans_2_3	0.85
PF01839	FG-GAP	0.85
PF08241	Methyltransf_11	0.85
PF08734	GYD	0.85
PF03928	HbpS-like	0.85
PF01370	Epimerase	0.85
PF10518	TAT_signal	0.85
PF01180	DHO_dh	0.85
PF01609	DDE_Tnp_1	0.85
PF13701	DDE_Tnp_1_4	0.85
PF13602	ADH_zinc_N_2	0.85
PF09423	PhoD	0.85
PF12680	SnoaL_2	0.85
PF07498	Rho_N	0.85
PF00583	Acetyltransf_1	0.85
PF00962	A_deaminase	0.85
PF13432	TPR_16	0.85
PF14690	zf-ISL3	0.85
PF05368	NmrA	0.85
PF02627	CMD	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG1324	Divalent cation tolerance protein CutA	Inorganic ion transport and metabolism [P]	1.71
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	1.71
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	1.71
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	1.71
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.71
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	1.71
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.85
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.85
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.85
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.85
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.85
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.85
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.85
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.85
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.85
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.85
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.85
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.85
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.85
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.85
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.85
COG1816	Adenosine/6-amino-6-deoxyfutalosine deaminase	Nucleotide transport and metabolism [F]	0.85
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.85
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.85
COG0167	Dihydroorotate dehydrogenase	Nucleotide transport and metabolism [F]	0.85
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
All Organisms	root	All Organisms	48.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
cellular organisms	root	All Organisms → cellular organisms	48.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	36.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	23.93 %
Candidatus Dormibacteraeota	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota	2.56 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.56 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	15.38 %
unclassified Candidatus Dormibacteraeota	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota	2.56 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.71 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	2.56 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.71 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.71 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.71 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.71 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.71 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.85 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	2.56 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.71 %
Nannocystineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae	1.71 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.71 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.71 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.71 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.85 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	2.56 %
Kofleriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae	1.71 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.71 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.71 %
Sphaerisporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerisporangium	0.85 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.85 %
Saccharopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	0.85 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.85 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	2.56 %
unclassified Kofleriaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae	1.71 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.71 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.71 %
Actinoplanes auranticolor	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes auranticolor	0.85 %
Saccharopolyspora spinosa	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora spinosa	0.85 %
Sphaerisporangium album	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerisporangium → Sphaerisporangium album	0.85 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.85 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	2.56 %
Kofleriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1.71 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.71 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.71 %
Actinoplanes auranticolor	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes auranticolor	0.85 %
Saccharopolyspora spinosa	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora spinosa	0.85 %
Sphaerisporangium album	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerisporangium → Sphaerisporangium album	0.85 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.85 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725001\|GPWNP_F5MPXY301AJZHN	Not Available	510	Open in IMG/M
3300003373\|JGI25407J50210_10000503	All Organisms → cellular organisms → Bacteria	7851	Open in IMG/M
3300003373\|JGI25407J50210_10056537	Not Available	989	Open in IMG/M
3300004463\|Ga0063356_105707000	Not Available	534	Open in IMG/M
3300005562\|Ga0058697_10187089	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300005562\|Ga0058697_10257919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	815	Open in IMG/M
3300005981\|Ga0081538_10009189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8285	Open in IMG/M
3300005981\|Ga0081538_10021143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4764	Open in IMG/M
3300005981\|Ga0081538_10351936	Not Available	533	Open in IMG/M
3300006058\|Ga0075432_10606982	Not Available	501	Open in IMG/M
3300006847\|Ga0075431_102164064	Not Available	511	Open in IMG/M
3300007790\|Ga0105679_11011179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1850	Open in IMG/M
3300009100\|Ga0075418_10565618	Not Available	1223	Open in IMG/M
3300009100\|Ga0075418_12429666	All Organisms → cellular organisms → Bacteria → Terrabacteria group	572	Open in IMG/M
3300009147\|Ga0114129_10278503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2235	Open in IMG/M
3300009147\|Ga0114129_10894073	Not Available	1126	Open in IMG/M
3300009789\|Ga0126307_10024837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4566	Open in IMG/M
3300009821\|Ga0105064_1010030	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1678	Open in IMG/M
3300009822\|Ga0105066_1114089	Not Available	603	Open in IMG/M
3300009836\|Ga0105068_1130112	Not Available	509	Open in IMG/M
3300009840\|Ga0126313_10062409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2659	Open in IMG/M
3300009840\|Ga0126313_10633090	Not Available	863	Open in IMG/M
3300010038\|Ga0126315_10573158	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300010041\|Ga0126312_10075276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes auranticolor	2280	Open in IMG/M
3300010041\|Ga0126312_10340995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1061	Open in IMG/M
3300010041\|Ga0126312_10496964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	873	Open in IMG/M
3300010042\|Ga0126314_10057665	Not Available	2542	Open in IMG/M
3300010042\|Ga0126314_10134781	Not Available	1710	Open in IMG/M
3300010042\|Ga0126314_10151973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	1613	Open in IMG/M
3300010042\|Ga0126314_10250518	Not Available	1256	Open in IMG/M
3300010044\|Ga0126310_10190005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1342	Open in IMG/M
3300010166\|Ga0126306_10941431	Not Available	702	Open in IMG/M
3300010166\|Ga0126306_11468356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	565	Open in IMG/M
3300010166\|Ga0126306_11560315	Not Available	549	Open in IMG/M
3300010329\|Ga0134111_10441470	Not Available	563	Open in IMG/M
3300012021\|Ga0120192_10071751	Not Available	657	Open in IMG/M
3300012353\|Ga0137367_10959200	Not Available	586	Open in IMG/M
3300012353\|Ga0137367_11059411	Not Available	550	Open in IMG/M
3300012355\|Ga0137369_10675984	Not Available	711	Open in IMG/M
3300012360\|Ga0137375_10414609	Not Available	1172	Open in IMG/M
3300012360\|Ga0137375_11144132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	600	Open in IMG/M
3300012941\|Ga0162652_100054303	Not Available	657	Open in IMG/M
3300014487\|Ga0182000_10260618	Not Available	701	Open in IMG/M
3300014487\|Ga0182000_10349363	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300014488\|Ga0182001_10305881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	646	Open in IMG/M
3300015371\|Ga0132258_10240635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4416	Open in IMG/M
3300015371\|Ga0132258_12382031	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1326	Open in IMG/M
3300015372\|Ga0132256_100064424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3452	Open in IMG/M
3300015373\|Ga0132257_100201415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2359	Open in IMG/M
3300017965\|Ga0190266_10457171	All Organisms → cellular organisms → Bacteria → Terrabacteria group	729	Open in IMG/M
3300018028\|Ga0184608_10012820	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	2895	Open in IMG/M
3300018078\|Ga0184612_10034308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2629	Open in IMG/M
3300018078\|Ga0184612_10395789	Not Available	695	Open in IMG/M
3300018081\|Ga0184625_10503598	Not Available	611	Open in IMG/M
3300018476\|Ga0190274_11716693	Not Available	722	Open in IMG/M
3300021445\|Ga0182009_10687761	Not Available	553	Open in IMG/M
3300022694\|Ga0222623_10014867	All Organisms → cellular organisms → Bacteria	2866	Open in IMG/M
3300022756\|Ga0222622_10516107	Not Available	855	Open in IMG/M
3300026653\|Ga0208846_102531	Not Available	517	Open in IMG/M
3300027209\|Ga0209875_1015690	Not Available	891	Open in IMG/M
3300027880\|Ga0209481_10730395	Not Available	515	Open in IMG/M
3300027907\|Ga0207428_10268234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1270	Open in IMG/M
3300027907\|Ga0207428_10317276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1151	Open in IMG/M
3300027957\|Ga0209857_1066299	Not Available	622	Open in IMG/M
3300028708\|Ga0307295_10016422	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1786	Open in IMG/M
3300028711\|Ga0307293_10120950	Not Available	832	Open in IMG/M
3300028711\|Ga0307293_10127958	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300028717\|Ga0307298_10200570	Not Available	587	Open in IMG/M
3300028719\|Ga0307301_10003766	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4235	Open in IMG/M
3300028719\|Ga0307301_10087684	Not Available	980	Open in IMG/M
3300028719\|Ga0307301_10314330	Not Available	514	Open in IMG/M
3300028722\|Ga0307319_10024915	Not Available	1838	Open in IMG/M
3300028722\|Ga0307319_10077077	Not Available	1058	Open in IMG/M
3300028744\|Ga0307318_10018341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2250	Open in IMG/M
3300028744\|Ga0307318_10149054	Not Available	802	Open in IMG/M
3300028778\|Ga0307288_10036592	Not Available	1647	Open in IMG/M
3300028778\|Ga0307288_10052134	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1411	Open in IMG/M
3300028796\|Ga0307287_10293979	Not Available	614	Open in IMG/M
3300028810\|Ga0307294_10022276	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1681	Open in IMG/M
3300028811\|Ga0307292_10118809	Not Available	1051	Open in IMG/M
3300028814\|Ga0307302_10003536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6901	Open in IMG/M
3300028814\|Ga0307302_10061956	Not Available	1750	Open in IMG/M
3300028814\|Ga0307302_10398774	Not Available	680	Open in IMG/M
3300028814\|Ga0307302_10410187	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300028876\|Ga0307286_10044527	Not Available	1494	Open in IMG/M
3300028876\|Ga0307286_10185583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	752	Open in IMG/M
3300028878\|Ga0307278_10015431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	3548	Open in IMG/M
3300028878\|Ga0307278_10042199	All Organisms → cellular organisms → Bacteria	2075	Open in IMG/M
3300028878\|Ga0307278_10165782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	988	Open in IMG/M
3300028881\|Ga0307277_10289847	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300028881\|Ga0307277_10442301	Not Available	582	Open in IMG/M
3300031548\|Ga0307408_100196177	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1630	Open in IMG/M
3300031548\|Ga0307408_101204555	Not Available	706	Open in IMG/M
3300031731\|Ga0307405_11309845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	630	Open in IMG/M
3300031824\|Ga0307413_10489252	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300031824\|Ga0307413_12054627	Not Available	516	Open in IMG/M
3300031852\|Ga0307410_10383532	Not Available	1131	Open in IMG/M
3300031901\|Ga0307406_10737216	All Organisms → cellular organisms → Bacteria → Terrabacteria group	826	Open in IMG/M
3300031901\|Ga0307406_11016490	Not Available	712	Open in IMG/M
3300031903\|Ga0307407_10574936	Not Available	836	Open in IMG/M
3300031903\|Ga0307407_11347221	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300031995\|Ga0307409_100658446	Not Available	1042	Open in IMG/M
3300031995\|Ga0307409_101228006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	773	Open in IMG/M
3300031995\|Ga0307409_101416469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerisporangium → Sphaerisporangium album	721	Open in IMG/M
3300031995\|Ga0307409_102029581	Not Available	605	Open in IMG/M
3300032002\|Ga0307416_100046583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3423	Open in IMG/M
3300032002\|Ga0307416_101596891	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300032002\|Ga0307416_102799336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	583	Open in IMG/M
3300032004\|Ga0307414_10695409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	920	Open in IMG/M
3300032004\|Ga0307414_11807209	Not Available	570	Open in IMG/M
3300032005\|Ga0307411_11675272	Not Available	588	Open in IMG/M
3300032126\|Ga0307415_100188173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1626	Open in IMG/M
3300032126\|Ga0307415_100889385	Not Available	820	Open in IMG/M
3300032126\|Ga0307415_102545010	Not Available	504	Open in IMG/M
3300032159\|Ga0268251_10385918	Not Available	603	Open in IMG/M
3300032174\|Ga0307470_10832992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora spinosa	718	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	60.68%
Host-Associated	Host-Associated	39.32%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.56%
Plants	Host-Associated → Plants	39.32%
Aquatic	Environmental → Aquatic	5.13%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.06%
Sediment	Environmental → Aquatic → Sediment	5.13%
Roots	Host-Associated → Plants → Roots	4.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.42%
Phylloplane	Host-Associated → Plants → Phylloplane	2.56%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	28.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.13%
Sand	Environmental → Terrestrial → Soil → Sand	5.13%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	4.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.56%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	2.56%
Loam	Environmental → Terrestrial → Soil → Loam	0.85%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	28.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.13%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	4.27%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	4.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.56%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	2.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.85%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.85%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	24.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	20.51%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	12.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.69%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.27%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	4.27%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	4.27%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.42%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.56%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	2.56%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.85%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.85%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.85%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725001	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009821	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30	Environmental	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300012021	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300026653	Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1105 (SPAdes)	Environmental	Open in IMG/M
3300027209	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027957	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPWNP_01856440	2067725001	Soil	VGTWYDPELGRPIAAPLERCAELLGVDLATVASWPPTS
JGI25407J50210_1000050314	3300003373	Tabebuia Heterophylla Rhizosphere	VGTWHDPDVGRPIAAPLPRCAELLGVDLATIAAAAANVEPYLRADGA
JGI25407J50210_100565371	3300003373	Tabebuia Heterophylla Rhizosphere	VGTWHDLDVGRPIAAPLERCAELLGVDLATIAAAAANVEPYLRADGA
Ga0063356_1057070001	3300004463	Arabidopsis Thaliana Rhizosphere	VGTWQDPELGQPLAAPLERCAELLGVDLATIRAAAANVEP
Ga0058697_101870891	3300005562	Agave	VPDPDSGRPVAAPLDQCTQLLGIDLATVRELAAKVEP
Ga0058697_102579192	3300005562	Agave	MVVGTWEADDPAYSRPIAAPLERCAELLGVDLATIQRA
Ga0081538_100091899	3300005981	Tabebuia Heterophylla Rhizosphere	LVGTWHDPALGRPIAAPLQRCAELLGVDLTTISEAAANVEPYIRADGTRI*
Ga0081538_100211431	3300005981	Tabebuia Heterophylla Rhizosphere	VGTWHDPDLGRPIAAPLERCAELLGVDLATVGELAANVEPYVRADGTSI
Ga0081538_103519361	3300005981	Tabebuia Heterophylla Rhizosphere	VGTWHDPALGRPIAAPLPRCADLLGVDLATIQQAAANIEPYVRADGTRIWS
Ga0075432_106069821	3300006058	Populus Rhizosphere	MGSIPGRAGTWHDPDQGRPIAAPLERCAQLLGVELATVRTLAATVEP
Ga0075431_1021640641	3300006847	Populus Rhizosphere	VGTWHDPDSGRPIAAPLERCAELLGVDVATIQKAVANVQPYLRADG
Ga0105679_110111791	3300007790	Soil	VGTWYDLDLGRPIAAPLERCAELLGVDLTTIQEAAANVEPY
Ga0075418_105656182	3300009100	Populus Rhizosphere	VGTWYDPELGRPIAAPLERCAELLGVDLATIRTLAADVEPYLRADGTKV*
Ga0075418_124296661	3300009100	Populus Rhizosphere	VGTWEADDQAYSRPIAAPLETCAELLGVDLTTIQW
Ga0114129_102785035	3300009147	Populus Rhizosphere	VGTWHDLDVGRPIAAPLERCAELLGIDLAAIRAAAANVEPYLRADGT
Ga0114129_108940731	3300009147	Populus Rhizosphere	VGTWHDPELVRPIAAPLERCAELLGVDLATVSELA
Ga0126307_100248372	3300009789	Serpentine Soil	VGTWHDLDLGRPIAAPLEQCAVLLGVDLATVRELAAEVEPYIRADGTGSGA*
Ga0105064_10100301	3300009821	Groundwater Sand	VGTWHDPDVGRPIAAPLERCAELLGVDLATIRAAAANVEPYLRTDGTRIWSL
Ga0105066_11140891	3300009822	Groundwater Sand	VGTWHDPEAGRPIAAPLERCAELFGVDLATVHGLAANVEPYLR
Ga0105068_11301122	3300009836	Groundwater Sand	VGTWHDPDLGRPIAAPLERCAELLGVDLATVCEVA
Ga0126313_100624094	3300009840	Serpentine Soil	VGSWHDPDLGRPIAAPLERCAELLGVDLATARELAANVQPYVRAD
Ga0126313_106330901	3300009840	Serpentine Soil	VGRPIAAPLERCAELLGVDLATVCKLAAKVEPYIRADGTRSGA*
Ga0126315_105731582	3300010038	Serpentine Soil	VGTWHDPGLGRPIAASLERCAELLGVDLVTIREAATTVEP
Ga0126312_100752761	3300010041	Serpentine Soil	VGTWHDPDLGRPIAAPLERCAELLGVDLATARELAANVQPYV
Ga0126312_103409951	3300010041	Serpentine Soil	VGTWHDPDLGRPIAAPLEQCAELLDVDLATVRELAAEVEPYIRADG
Ga0126312_104969641	3300010041	Serpentine Soil	VGTWYDPELGRPIAAPLERCAELLGVDLTTVRKLAVNVEPYLRADGTKVW
Ga0126314_100576651	3300010042	Serpentine Soil	VFDTLFRVGTWHDRDLGRPIAAPLERCAELLGVDLATI
Ga0126314_101347813	3300010042	Serpentine Soil	VGTWHNPDLGRPIAAPLERCAELLGVDLATVCLLAAEVEPYVR
Ga0126314_101519733	3300010042	Serpentine Soil	VETWHDPDLGRPIAAPLERCAELLGVDLATIHQAAANVEPYLRADGTRIWS
Ga0126314_102505185	3300010042	Serpentine Soil	VGTWHDPVDRPVAAPLERCAELLGVDLATVCLLAAEVEP
Ga0126310_101900051	3300010044	Serpentine Soil	VGTWHDPDLGRPIAAPLERCAELLGVDLATIHELAANVE
Ga0126306_109414311	3300010166	Serpentine Soil	GSVGTWHDLDLGRPIAAPLEQCAVLLGVDLATVRELAAEVEPYIRADGTGSGA*
Ga0126306_114683562	3300010166	Serpentine Soil	VGTWHDPGLGRPIAAPLERCAELLGVDLVTIRGAATNVEPYIRA
Ga0126306_115603151	3300010166	Serpentine Soil	VGTWHDVDVGRPIAAPLEQCAQLLGVDLATVHELAAKVEPYLP
Ga0134111_104414701	3300010329	Grasslands Soil	VGTWHDPDLGRPIAAPLERCAELLGVDLATVGELAAK
Ga0120192_100717512	3300012021	Terrestrial	VGTWHDPDLGRPIAAPLERCAELLGVDLATVREPAAHVE
Ga0137367_109592001	3300012353	Vadose Zone Soil	MRTWEARDPDFGRPLAAPLEHCAELLRVDLATVRKVAANVEPYVRADG
Ga0137367_110594111	3300012353	Vadose Zone Soil	MRTWERHDPDLTRPIAAPLDRCAQLLGVELAIVRKA
Ga0137369_106759841	3300012355	Vadose Zone Soil	MRTWEAHDPDLGRPITAPLEQCAELLGIDLATVRELAAGIEPYI
Ga0137375_104146092	3300012360	Vadose Zone Soil	VGTWHDPEVGRPIAAPLERCAELLGLDLATVHELAAGI*
Ga0137375_111441322	3300012360	Vadose Zone Soil	VGTWHDPDLGRPIAAPLERCAELLGVDLATVRELA
Ga0162652_1000543031	3300012941	Soil	VGTWYDLNAGRPIAAPLERCAELLGVDLATIREAAANVEPYLR
Ga0182000_102606181	3300014487	Soil	VGTWHDPDVGWPIAAPLEQCAELLDVDLAAIRAAA
Ga0182000_103493631	3300014487	Soil	VGTWHDLDTGRPIAAPLERCAELLGVDLATVRELA
Ga0182001_103058812	3300014488	Soil	VGTWHDLAVGRPIAAPLERCAELLGVDLATIREAAANVEPYLRA
Ga0132258_102406357	3300015371	Arabidopsis Rhizosphere	MGSIPGRAGTWHDPDQGRPIAAPLERCAQLLGVELATVRALAA
Ga0132258_123820313	3300015371	Arabidopsis Rhizosphere	VGTWHDPDQGRPIAAPLERCAQLLGVELATVRALA
Ga0132256_1000644241	3300015372	Arabidopsis Rhizosphere	MGSIPGRAGTWHDPDQGRPIAAPLERCAQLLGVELATVRA
Ga0132257_1002014153	3300015373	Arabidopsis Rhizosphere	VGTWHDPGLGRPIAAPLERCAELLGVELATVRALAATVEPYL
Ga0190266_104571712	3300017965	Soil	VGTWHDPDLGRPIAAPLERCAELLGVDLATIGEAAANVAPYIRADGTRIWS
Ga0184608_100128203	3300018028	Groundwater Sediment	VGIWYDLDVDRPIAAPLERCAELLGVDLAAIGAAAANVEPYLRPDGTRI
Ga0184612_100343083	3300018078	Groundwater Sediment	VGTWHDPDLGRPIAAPLERCAELLGVDLATVGELAAKVEPYVRADDTRI
Ga0184612_103957891	3300018078	Groundwater Sediment	VGTWHDPDLGRPIAAPLERCAELLGVDLAIVRGVAANVEPY
Ga0184625_105035981	3300018081	Groundwater Sediment	VGTWHDPDLGRPIAAPLPRCAELLGVDLATVQEAAANVE
Ga0190274_117166931	3300018476	Soil	VGTWHDPDLGRPIAAPLPQCAELLGVDLAIVRELAAGVEPYICAD
Ga0182009_106877611	3300021445	Soil	VGNWHDPDLGRPIAGPLERCAQLLGIDLATIQDAAANVGPM
Ga0222623_100148675	3300022694	Groundwater Sediment	VGTWHDPDLGRPIAAPLERCAQLLGVELATVRTLA
Ga0222622_105161071	3300022756	Groundwater Sediment	VGTWEADDPAYSRPSAAPLERCAELLGVDLATIQRAAADVEPYIRVDGS
Ga0208846_1025312	3300026653	Soil	VGTWHDLDVGRPITAPLERCAELLGIDLATVRELAAKVEPYIRADGTEV
Ga0209875_10156901	3300027209	Groundwater Sand	VGTWHDPGLGRPIAAPLERCAELLGVELAAVREVAAKVEPYVRADGTRVWS
Ga0209481_107303951	3300027880	Populus Rhizosphere	VGTWHDPDPGRPIAAPLERCAELLGVDLATIGEAAANVAPYIRADGTRIW
Ga0207428_102682341	3300027907	Populus Rhizosphere	VGTWHDPDLGRPIAAPLERCAELLGVDLATVRKLATQVEPYIRVDGTKVWS
Ga0207428_103172761	3300027907	Populus Rhizosphere	VGTWHDLDVGRPIAAPLERCAELLGIDLAAIRAAAANVEPYL
Ga0209857_10662993	3300027957	Groundwater Sand	VGTWHDPDLGRPIAAPLERCAELLGVDLATICELAANIE
Ga0307295_100164221	3300028708	Soil	VGPWHDLDVDRPIAAPLQRCAELLGVDLATIGVAAGNVEPYLRPDG
Ga0307293_101209501	3300028711	Soil	VGTWHDPDLGRPIAAPLERCAELLGVDLATIRAAAANVEPY
Ga0307293_101279581	3300028711	Soil	VGTWHDLNVGRPIAAPLERCAELLGVDLATIREAAANVEPY
Ga0307298_102005701	3300028717	Soil	VGIWYDLDVDRPIAAPLERCAELLGVDLAAIGAAAANVEPYLRPDGT
Ga0307301_100037661	3300028719	Soil	VGTWHDPELGRPIAAPLERCAELLGVDLATICEAAATVEPYIRA
Ga0307301_100876841	3300028719	Soil	VGTWHDPDLGRPIAAPLERCAELLGVDLATIGEAAANVEPYRRADATRVWSLM
Ga0307301_103143301	3300028719	Soil	VGTWHDPDLGRPIAAPLERCAELLGVDLATVRELAAKVQRPP
Ga0307319_100249151	3300028722	Soil	VGTWHDPDLGRPIAAPLERCAELLGIDLATIRELAAKVQPY
Ga0307319_100770772	3300028722	Soil	VGTWHDPELGRPIAAPLERCAELLGVDLATICAAAANVEPY
Ga0307318_100183413	3300028744	Soil	VGTWHDPDLGRPIAAPLERCAELLGVDLATIRAAAANVEPYLRT
Ga0307318_101490542	3300028744	Soil	VGTWHDLNVGRPIAAPLERCAELLGVDLATIREAA
Ga0307288_100365922	3300028778	Soil	VRTWQDPDLGRPIAAPLERCAELLGIDLATIRAAAAN
Ga0307288_100521343	3300028778	Soil	VGTWHDLDLGRPIAAPLERCAELLDVDLATIGAAAANVEPYIRA
Ga0307287_102939791	3300028796	Soil	VGTWHDPDLGPPIAAPLEQCAELLGVDLATVHALSAK
Ga0307294_100222764	3300028810	Soil	VGTWHDLDLGRPIAAPLERCAELLDVDLATIGAAAAN
Ga0307292_101188092	3300028811	Soil	VVGTWHDPDLGRPIAAPLERCAELLGVDLAAVTEMAFSSS
Ga0307302_100035366	3300028814	Soil	VGRWHDLDVDRPIAAPLQRCAELLGVDLATIGVAAANVEPYLRPDGT
Ga0307302_100619562	3300028814	Soil	VGTWHDPDLGRPIAAPLERCAELLGVDLATICEAAADVEPYIRADGTTIWSLM
Ga0307302_103987741	3300028814	Soil	VGTWHDPDLGRPIAAPLKRCAELLGVDLVTIRKAATNVEPYLRADGT
Ga0307302_104101871	3300028814	Soil	VGTWHDLNVGRPIAAPLERCAELLGVDLATIREAAAN
Ga0307286_100445272	3300028876	Soil	VKSRIPDWQDPDLGRPIAAPLERCAQLLGVALPTVREL
Ga0307286_101855832	3300028876	Soil	VGTWHDPDLGPPIAAPLEQCAELLGVDLATVHALAAKVDPYIR
Ga0307278_100154312	3300028878	Soil	MRSISYRRGTWHDADLGRPIAAPLDQCAELLSVDLATIRELAANVEP
Ga0307278_100421993	3300028878	Soil	VGTWHDPDLGRPIAAPLERCVELLGVDLATINELAAKVEPYIR
Ga0307278_101657822	3300028878	Soil	VGTWHDLDVGRPIAAPLERCAELLGVDLATVCKLAAKVEPDR
Ga0307277_102898472	3300028881	Soil	VGTWHDLNVGRPIAAPLERCAELLGVDLATIREVAATV
Ga0307277_104423011	3300028881	Soil	MSAWDANDPTFGRPLAAPLEQCAQLLGVDLATLRTVAADVEPYLRVDG
Ga0307408_1001961771	3300031548	Rhizosphere	VGTWHDLDLGRPIAAPLERCAELLGVDLATVRELAAK
Ga0307408_1012045551	3300031548	Rhizosphere	VGTWEAEDPAYFRPIAAPLERCAELLGVDLATIQGAAADVEPYIR
Ga0307408_1012376802	3300031548	Rhizosphere	VGTWEADDPAYSRPSAAPLERCAELLGVDLATIQRAATDVEPY
Ga0307405_113098452	3300031731	Rhizosphere	VGTWHDLDLGRPIAAPLEQCAVLLSVDLATVRELAAEVEPYIRAD
Ga0307413_104892521	3300031824	Rhizosphere	VGTWHDPDLGRPIAAPLEQCAELLGVDLATVCELATNV
Ga0307413_120546271	3300031824	Rhizosphere	VGTWHDPDVDRPIAAPLQQCAELLGVALATVSELVANIEPYLRADGTRLWSLTRLE
Ga0307410_103835322	3300031852	Rhizosphere	VGTWHDLNLGRPIAAPLERCAELLGVDLAMIREAATNVEP
Ga0307406_107372161	3300031901	Rhizosphere	VGTWHDPDLGRPIAAPLERCAELLGVDLATICAAAANVEPYLRADGTKI
Ga0307406_110164901	3300031901	Rhizosphere	VGIWHDPDLGRPIAAPLERCADLLGVDLATIGEAAANVEPYLRADGTRI
Ga0307407_105749362	3300031903	Rhizosphere	VGTWQDPDLGRPIAAPLHQCAELLGVDLATIREAAANIEPNQRAD
Ga0307407_113472212	3300031903	Rhizosphere	VGTWEADDPAYARPIAAPLERCAELLGVDLVTITG
Ga0307409_1006584462	3300031995	Rhizosphere	VGTWHDPDLGRPIAAPLERCAQLLGMDLATVRELAAWVEP
Ga0307409_1012280062	3300031995	Rhizosphere	VGTWHDPDQGRPIAAPLERCAQLLGADLATVGELAAAVEPYLRADGTRI
Ga0307409_1014164692	3300031995	Rhizosphere	VGTRHDDALGRPITAPLDQCAELLGVDLATIQKVAAGVEPCIRADSSKV
Ga0307409_1020295812	3300031995	Rhizosphere	LHDLDLGRPIAAPLEECAELLGVDLATVCTLAAKVE
Ga0307416_1000465836	3300032002	Rhizosphere	VGTWHDPDLGRPIAAPLERCAELLGVDLATIDEAAANVEPYIRV
Ga0307416_1015968912	3300032002	Rhizosphere	VGTWHDPDLGRPIAAPLERCAELLGVDLATVCELAA
Ga0307416_1027993362	3300032002	Rhizosphere	VGTWHDPDLGRPIAAPLDRCAELLGVDLATVQELAA
Ga0307414_106954091	3300032004	Rhizosphere	VGTWHDLDLGRPIAAPLERCAELLGVDLATVRELAAKVEPYIRAD
Ga0307414_118072091	3300032004	Rhizosphere	VGTWHDPEQGRPIAAPLERCAELLGVDLATIWVAAANVEPYLRADG
Ga0307411_116752721	3300032005	Rhizosphere	VGTWHDPDLGRPIAAPLEQCAKLLGVDLVAVRKLAAKVQP
Ga0307415_1001881733	3300032126	Rhizosphere	VGTWYDPELGRPIAAPLERCAELLGVDLATVRKLAADVEPY
Ga0307415_1008893851	3300032126	Rhizosphere	VGTWHEASLGRPIAAPLERCAELLGVDLATARELAAKVEPYICADGTKV
Ga0307415_1025450101	3300032126	Rhizosphere	VGTWHDPDLGRPIAAPLERCAELLGVDLDTVRTLATKVEPYLRA
Ga0268251_103859181	3300032159	Agave	VGTWHDPDLGRPIAAPLERCAELLGVDLATVRELAAKVEPYIRADGTKCFGS
Ga0307470_108329921	3300032174	Hardwood Forest Soil	VGTWHDPDQGRPIAAPLERCAQLLGVELATVRTLAATVEPYLRAD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F076979

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences