3300026629: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-C (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026629
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072133 | Ga0207534
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-C (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2300506
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.42
  • Long. (^o): -89.4
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001505	Metagenome	681	Y
F003605	Metagenome / Metatranscriptome	477	Y
F013894	Metagenome	267	N
F040803	Metagenome / Metatranscriptome	161	Y
F069836	Metagenome	123	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207534_10128	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	699
Ga0207534_10145	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	685
Ga0207534_10295	Not Available	571
Ga0207534_10329	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	557
Ga0207534_10372	Not Available	537

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207534_10128	Ga0207534_101281	F001505	MSDTHVMQNAKGETKLRTQAKFDPIRWALLNPWLSEGQPDDRTPMNGSVKDSGGTPSVQRSFARRSHQAMYKKWSQARHD
Ga0207534_10145	Ga0207534_101452	F069836	GYALGDGYALGDGFALGDGFAIGDCSLGDAGTGMK
Ga0207534_10295	Ga0207534_102951	F013894	MTYQLEEPFFEEKGKITAQKEIGDSKTQMTFSSNGTFKGNIEVTNSGDLVSLSKGNKGISAQGQGVVTTRDGSEKANYTFLQVGKTTTKDGKSVLRGVGSAVWSTDSTGKLAFLDNMLSFFIIEVDEMGNFSSKDRELK
Ga0207534_10329	Ga0207534_103291	F040803	MELLIAVGFFGLISALVYFVLASKAPIADEAIQRRLQNIGFQNEARTQIRLHETEEITFWEQVSNFFFGDRELPERFNNAARRLHQAGYRGNRAVRIYWGLRIFLCLAFGFGGMLLALTSGAAMSDFLMLAGVGAAIGFMLPF
Ga0207534_10372	Ga0207534_103722	F003605	MAIGDAALAAGFSLVPETGEEGKVKHGAREINRTRDYTAGVGAQMPSNKGAYQAKAGISYGTAEPTGGLDGDIYFKVV