3300026393: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0917-MT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300026393
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114432 | Gp0296215 | Ga0256766
• Sample Name: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0917-MT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 78605407
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	1
Not Available	2
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → research facility → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Iowa
• Coordinates
  • Lat. (^o): 42.0
  • Long. (^o): -93.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006133	Metagenome / Metatranscriptome	380	Y
F034190	Metagenome / Metatranscriptome	175	Y
F079382	Metagenome / Metatranscriptome	116	Y
F093130	Metagenome / Metatranscriptome	106	Y
F098404	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256766_126202	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	829
Ga0256766_126966	Not Available	813
Ga0256766_136880	Not Available	652
Ga0256766_143535	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	579
Ga0256766_144273	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	573

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256766_126202	Ga0256766_1262021	F006133	VCQSSSNSVCIVWTIRRLLIDHHWRLSRRCVVMMMKSLSLRPIVLVALLALLASPLLLSLSPASSVLSAAPERKAQDVEDCVACRYIWLQVEMDVGNSQIEENIYDSFTQNCIEAQKAPIFYPACQDMFDGIDDMIGDYMDGYTVNQVCENARLCR
Ga0256766_126966	Ga0256766_1269661	F079382	VELSGELGSVSRINSHQTAVKVGVWDFVFENSDMFINQRVKVSDARNLRSHGLLGQTWRETTYPNPIKYVQGSVDDYVIREGDLFGDNFVYNNFN
Ga0256766_136880	Ga0256766_1368801	F034190	LHLFLGISNRIILDVYKELFGEPFVVEAVQSIKTVHSAGCSGASDLHELNGPEISKWVKKQCSTSMLTSAASTSSLPDVTKATHSVLSRWLLQMHSCLLHSRDWMPSEIEAWRGIVDDIHQHWCTETSSEAFPKLHMLHHTVDFAERHRFLGRASEAQIESFHAQFNSLFHKQHRNQSYNTPERLRRSLADATLRVVQPLLQL
Ga0256766_143529	Ga0256766_1435293	F093130	GVWEFMFENSDMFINQRVKVNDARQLRSHGLLGQTWKEQTYPNPIKYIQGAVDDYVIRDGDLFGDNFVYNAFN
Ga0256766_143535	Ga0256766_1435351	F098404	AAAVRPKLSETFESNGFVSIKHNGTLFFGEGWYHVSQPDGKALEAYAFGGFDHLNVYELQRFDKGKAYEVIHDEKKPICHTKSLTGKMPQLWDWVEKADFVRNFTSSGTLYDLWSYKTAGITLEVGVPQAHPDILAYFGRFSAGNEFSYFVETWKNIKPHSTWFEIPRECHLGPK
Ga0256766_144273	Ga0256766_1442731	F098404	MRSFLVCVVLALAIACAAAQQTRPKLSETFESKGFVQIKHNGTLFFGEGWYHFGGAEHLNVYELQRFDKGKAFEVIHAGHDKSPICHTKPLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPSILAYFGRFSAGNEFSYYVEQWKTDKPHSTWFEIPRECHL