3300026364: Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T50

Overview

Basic Information

• IMG/M Taxon OID: 3300026364
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0131983 | Gp0291018 | Ga0247848
• Sample Name: Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T50
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 27906201
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Peatland Microbial Communities From Stordalen Mire, Sweden
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → peatland → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3533
  • Long. (^o): 19.0466
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074274	Metagenome / Metatranscriptome	119	Y
F078013	Metagenome	117	Y
F085859	Metagenome	111	Y
F097738	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247848_100502	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae	3485
Ga0247848_101453	All Organisms → cellular organisms → Archaea → Euryarchaeota	1567
Ga0247848_103863	All Organisms → cellular organisms → Bacteria → Acidobacteria	719
Ga0247848_106526	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	537

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247848_100502	Ga0247848_1005021	F085859	WLIVLQTQGLSMTTQERKPKEPCFFTGQEALIYEVERACGQLNKLKELQLDEPFLRAVAAEIRAHMDHLGASLQDLTEPCG
Ga0247848_101453	Ga0247848_1014531	F078013	MTRGIERDDCNIDNVDELHAMRDEALTNVKAPPPSEYDIAQFKEAFADNEEDSDYDRQERNAKQRALIWYSDTLYSASELLVIMPKVVPDYHEFDGSKTIQLLTSMYPEAYFLPGREYGVAIFIYPPNGTTALKKPNEIEMERLKANSYTIHVTQREGELIHVIELWFDXAEKLXHVEANAT
Ga0247848_103863	Ga0247848_1038632	F097738	MPSSTMKPDPFYDRTRELAALDRAWTRHGNGGQMLLLYGRRRLGKT
Ga0247848_106526	Ga0247848_1065262	F074274	MLYDFSMPIPERLNPTFDQTPSTLRLTEARQRLIVALDVPDAASAVA