Sample 3300026180

Overview

Basic Information
IMG/M Taxon OID	3300026180 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114514 \| Gp0125928 \| Ga0209938
Sample Name	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_D1_MG (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	389727947
Sequencing Scaffolds	14
Novel Protein Genes	14
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → Viruses → Predicted Viral	4
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin234	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	South San Francisco, USA
Coordinates	Lat. (^o)	37.4965	Long. (^o)	-122.133	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001506	Metagenome / Metatranscriptome	681	Y
F005874	Metagenome	387	Y
F008719	Metagenome / Metatranscriptome	329	Y
F022817	Metagenome / Metatranscriptome	212	Y
F032166	Metagenome	180	Y
F050177	Metagenome	145	N
F054750	Metagenome	139	Y
F073153	Metagenome	120	N
F087385	Metagenome	110	Y
F097996	Metagenome	104	N
F099972	Metagenome	103	Y

Family

Category

Number of Sequences

3D Structure?

F001506

Metagenome / Metatranscriptome

681

F005874

Metagenome

387

F008719

Metagenome / Metatranscriptome

329

F022817

Metagenome / Metatranscriptome

212

F032166

Metagenome

180

F050177

Metagenome

145

F054750

Metagenome

139

F073153

Metagenome

120

F087385

Metagenome

110

F097996

Metagenome

104

F099972

Metagenome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209938_1022242	Not Available	2166	Open in IMG/M
Ga0209938_1026098	Not Available	1966	Open in IMG/M
Ga0209938_1046584	All Organisms → Viruses → Predicted Viral	1370	Open in IMG/M
Ga0209938_1053386	All Organisms → Viruses → Predicted Viral	1254	Open in IMG/M
Ga0209938_1053859	All Organisms → Viruses → Predicted Viral	1247	Open in IMG/M
Ga0209938_1061148	All Organisms → Viruses → Predicted Viral	1146	Open in IMG/M
Ga0209938_1063676	Not Available	1115	Open in IMG/M
Ga0209938_1071709	Not Available	1031	Open in IMG/M
Ga0209938_1078726	Not Available	969	Open in IMG/M
Ga0209938_1094314	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	858	Open in IMG/M
Ga0209938_1094710	Not Available	856	Open in IMG/M
Ga0209938_1110124	Not Available	773	Open in IMG/M
Ga0209938_1126485	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin234	705	Open in IMG/M
Ga0209938_1195250	Not Available	524	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0209938_1022242

Not Available

2166

Open in IMG/M

Ga0209938_1026098

Not Available

1966

Open in IMG/M

Ga0209938_1046584

All Organisms → Viruses → Predicted Viral

1370

Open in IMG/M

Ga0209938_1053386

All Organisms → Viruses → Predicted Viral

1254

Open in IMG/M

Ga0209938_1053859

All Organisms → Viruses → Predicted Viral

1247

Open in IMG/M

Ga0209938_1061148

All Organisms → Viruses → Predicted Viral

1146

Open in IMG/M

Ga0209938_1063676

Not Available

1115

Open in IMG/M

Ga0209938_1071709

Not Available

1031

Open in IMG/M

Ga0209938_1078726

Not Available

969

Open in IMG/M

Ga0209938_1094314

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta

858

Open in IMG/M

Ga0209938_1094710

Not Available

856

Open in IMG/M

Ga0209938_1110124

Not Available

773

Open in IMG/M

Ga0209938_1126485

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin234

705

Open in IMG/M

Ga0209938_1195250

Not Available

524

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0209938_1022242	Ga0209938_10222422	F087385	LKTGNGLLSHTAARAVPSAQESLTAVFGMGTGVTSLPL
Ga0209938_1026098	Ga0209938_10260986	F073153	QDMPVRDEIARIDGNIEGILTRLGQQGESVARLDLLVEEMKEMNQQLEHIEIRLNTLEGRID
Ga0209938_1046584	Ga0209938_10465841	F008719	MTFAWNNIPGANNLGVSVESFSDDALKRQQVAEHIQVKMSYDMKVVGADLGGFINSAIS
Ga0209938_1053386	Ga0209938_10533862	F099972	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKKDIERELNEKQN
Ga0209938_1053859	Ga0209938_10538594	F005874	MRMRARKATMAMIPNMPPDDDLTPAELYDRVEDITNLTVEELQAFKGSDYNEIYNARKSDAAQRKDEPLDDVIRLLSTEPADWRDVDDGFNEVDEAEELLNFQRRTQAQIASQGLGENYLTEEEDMTMREAASIRWGIDPDDQREWL
Ga0209938_1061148	Ga0209938_10611481	F097996	MAITTAGMHPRYLGFQVDWPVFVKMPFSADGKHWKKSEHFNWAERGIETKNAATLYAQGFIYHNTELAKANKVGDRLGEMSKDDLYSLVVQLNNIVKKQTTTTKEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEEY
Ga0209938_1063676	Ga0209938_10636763	F050177	MVRIPSDPPDDELTPRQLYDRFEEVTNLTASELKAFRDSEYNQEYLEGNSDRAQRGNEPLDDVITLLETPPEQWRDVEDGFNEIAEAREMLDFQRRTQAQIKSQGLGSNTLPEYDDMTFREAA
Ga0209938_1071709	Ga0209938_10717091	F032166	DVIRLLETPPDEWRDVDDGFNEIAEARELLDFQRRTQAQIKSQGLGSNTIAEYDDMTFREAASIRWGIDPDDEREWL
Ga0209938_1078726	Ga0209938_10787263	F005874	MAKIPSRPPDDMLSPEELYDRVEETVNLSVDDLFAFKRSEYNEEYNARKSDAAQAKDEPLDDVIRLLSTPPEAWKDEDDGFNEVQEAEELLDFQRRTQAQIASQGLGMNFLGDDQDMTMREAASIRWGIDPDDEREWL
Ga0209938_1094314	Ga0209938_10943142	F001506	MNQILFDNRCKCNEEISVVKKRKLTTRSEGKPLQYPKSTEIKCKTFQIKYDGKLSLLAKFILNSFQNKYIYYGIDDILYQFRFDSNEYERLLAILYSPIISLQNNYSINFFDIWVNEIYIEEDSKPNKFLSKESQPLSQFTYITVKFFYKTKVPTKKQESLW
Ga0209938_1094710	Ga0209938_10947101	F032166	NEEYLEYNSERAQRGNEPLDDVIRLLETPPDEWRDVDDGFNEIAEARELLDFQRRTQAQIKSQGLGSNTIAEYDDMTFREAASIRWGIDPDDEREWL
Ga0209938_1110124	Ga0209938_11101241	F097996	MAINREGMHPRYLGFQVDWPVFVKIPFTADGKQWKKSEHFNWAERNIDTKDAASLYAQGFIYHNTELNKANKVGDRLSEMNAEDLRTVVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEDFYTIRDTILGE
Ga0209938_1126485	Ga0209938_11264852	F054750	KEIEELNEYVNQYYKCDRTNGEELLLLQQKISGLLYYLETVRSQQHDAFESKVFELVQEGKSVARAVNEAHVTYPLMYKLRRIMDAGYRIVDAIRTNISYLKSEMNNIKR
Ga0209938_1195250	Ga0209938_11952502	F022817	MVKKKYYLPSGKMYKGATHRMNGKVHSGAKHTASSKVLSSKKPKKKK

Scaffold ID

Protein ID

Family

Sequence

Ga0209938_1022242

Ga0209938_10222422

F087385

LKTGNGLLSHTAARAVPSAQESLTAVFGMGTGVTSLPL

Ga0209938_1026098

Ga0209938_10260986

F073153

QDMPVRDEIARIDGNIEGILTRLGQQGESVARLDLLVEEMKEMNQQLEHIEIRLNTLEGRID

Ga0209938_1046584

Ga0209938_10465841

F008719

MTFAWNNIPGANNLGVSVESFSDDALKRQQVAEHIQVKMSYDMKVVGADLGGFINSAIS

Ga0209938_1053386

Ga0209938_10533862

F099972

MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKKDIERELNEKQN

Ga0209938_1053859

Ga0209938_10538594

F005874

MRMRARKATMAMIPNMPPDDDLTPAELYDRVEDITNLTVEELQAFKGSDYNEIYNARKSDAAQRKDEPLDDVIRLLSTEPADWRDVDDGFNEVDEAEELLNFQRRTQAQIASQGLGENYLTEEEDMTMREAASIRWGIDPDDQREWL

Ga0209938_1061148

Ga0209938_10611481

F097996

MAITTAGMHPRYLGFQVDWPVFVKMPFSADGKHWKKSEHFNWAERGIETKNAATLYAQGFIYHNTELAKANKVGDRLGEMSKDDLYSLVVQLNNIVKKQTTTTKEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEEY

Ga0209938_1063676

Ga0209938_10636763

F050177

MVRIPSDPPDDELTPRQLYDRFEEVTNLTASELKAFRDSEYNQEYLEGNSDRAQRGNEPLDDVITLLETPPEQWRDVEDGFNEIAEAREMLDFQRRTQAQIKSQGLGSNTLPEYDDMTFREAA

Ga0209938_1071709

Ga0209938_10717091

F032166

DVIRLLETPPDEWRDVDDGFNEIAEARELLDFQRRTQAQIKSQGLGSNTIAEYDDMTFREAASIRWGIDPDDEREWL

Ga0209938_1078726

Ga0209938_10787263

F005874

MAKIPSRPPDDMLSPEELYDRVEETVNLSVDDLFAFKRSEYNEEYNARKSDAAQAKDEPLDDVIRLLSTPPEAWKDEDDGFNEVQEAEELLDFQRRTQAQIASQGLGMNFLGDDQDMTMREAASIRWGIDPDDEREWL

Ga0209938_1094314

Ga0209938_10943142

F001506

MNQILFDNRCKCNEEISVVKKRKLTTRSEGKPLQYPKSTEIKCKTFQIKYDGKLSLLAKFILNSFQNKYIYYGIDDILYQFRFDSNEYERLLAILYSPIISLQNNYSINFFDIWVNEIYIEEDSKPNKFLSKESQPLSQFTYITVKFFYKTKVPTKKQESLW

Ga0209938_1094710

Ga0209938_10947101

F032166

NEEYLEYNSERAQRGNEPLDDVIRLLETPPDEWRDVDDGFNEIAEARELLDFQRRTQAQIKSQGLGSNTIAEYDDMTFREAASIRWGIDPDDEREWL

Ga0209938_1110124

Ga0209938_11101241

F097996

MAINREGMHPRYLGFQVDWPVFVKIPFTADGKQWKKSEHFNWAERNIDTKDAASLYAQGFIYHNTELNKANKVGDRLSEMNAEDLRTVVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEDFYTIRDTILGE

Ga0209938_1126485

Ga0209938_11264852

F054750

KEIEELNEYVNQYYKCDRTNGEELLLLQQKISGLLYYLETVRSQQHDAFESKVFELVQEGKSVARAVNEAHVTYPLMYKLRRIMDAGYRIVDAIRTNISYLKSEMNNIKR

Ga0209938_1195250

Ga0209938_11952502

F022817

MVKKKYYLPSGKMYKGATHRMNGKVHSGAKHTASSKVLSSKKPKKKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026180: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_D1_MG (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences