Sample 3300026172

Overview

Basic Information
IMG/M Taxon OID	3300026172 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114514 \| Gp0125926 \| Ga0209964
Sample Name	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_D1_MG (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	312785759
Sequencing Scaffolds	12
Novel Protein Genes	14
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → Viruses → Predicted Viral	3
Not Available	8

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	South San Francisco, USA
Coordinates	Lat. (^o)	37.4961	Long. (^o)	-122.1331	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001506	Metagenome / Metatranscriptome	681	Y
F005874	Metagenome	387	Y
F008719	Metagenome / Metatranscriptome	329	Y
F037490	Metagenome / Metatranscriptome	168	Y
F038111	Metagenome	166	N
F042291	Metagenome	158	Y
F050177	Metagenome	145	N
F066493	Metagenome	126	Y
F097996	Metagenome	104	N
F099972	Metagenome	103	Y
F104555	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F001506

Metagenome / Metatranscriptome

681

F005874

Metagenome

387

F008719

Metagenome / Metatranscriptome

329

F037490

Metagenome / Metatranscriptome

168

F038111

Metagenome

166

F042291

Metagenome

158

F050177

Metagenome

145

F066493

Metagenome

126

F097996

Metagenome

104

F099972

Metagenome

103

F104555

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209964_1013365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2262	Open in IMG/M
Ga0209964_1016464	All Organisms → Viruses → Predicted Viral	2023	Open in IMG/M
Ga0209964_1025313	Not Available	1599	Open in IMG/M
Ga0209964_1039746	All Organisms → Viruses → Predicted Viral	1239	Open in IMG/M
Ga0209964_1044246	All Organisms → Viruses → Predicted Viral	1164	Open in IMG/M
Ga0209964_1060284	Not Available	971	Open in IMG/M
Ga0209964_1066430	Not Available	916	Open in IMG/M
Ga0209964_1117163	Not Available	648	Open in IMG/M
Ga0209964_1145273	Not Available	567	Open in IMG/M
Ga0209964_1150488	Not Available	554	Open in IMG/M
Ga0209964_1160490	Not Available	533	Open in IMG/M
Ga0209964_1162079	Not Available	530	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0209964_1013365

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria

2262

Open in IMG/M

Ga0209964_1016464

All Organisms → Viruses → Predicted Viral

2023

Open in IMG/M

Ga0209964_1025313

Not Available

1599

Open in IMG/M

Ga0209964_1039746

All Organisms → Viruses → Predicted Viral

1239

Open in IMG/M

Ga0209964_1044246

All Organisms → Viruses → Predicted Viral

1164

Open in IMG/M

Ga0209964_1060284

Not Available

971

Open in IMG/M

Ga0209964_1066430

Not Available

916

Open in IMG/M

Ga0209964_1117163

Not Available

648

Open in IMG/M

Ga0209964_1145273

Not Available

567

Open in IMG/M

Ga0209964_1150488

Not Available

554

Open in IMG/M

Ga0209964_1160490

Not Available

533

Open in IMG/M

Ga0209964_1162079

Not Available

530

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0209964_1013365	Ga0209964_10133653	F001506	MNKILFSNRCKCNEEISVIKKRKSTSRSEGKPLQYPKSAEIKWKTFRIKHDGKLSLIAKFILNSFQNKYIYYGIDDILYQFGLSSTEYETLLAILYSPVISLQNNYSVNFFDIWISEIYVEEDSKPNKFLTKKDQTLSQFTYITLKFFYKTKVPTKKQASLW
Ga0209964_1016464	Ga0209964_10164641	F037490	PDRYDALVWALTDLMLKGFAKPKLQLVYSNAKGLR
Ga0209964_1025313	Ga0209964_10253134	F050177	MVRIPSDPPDDELTPRQLYDRFEEVTNLTASELKAFRDSEYNQEYLEGNSDRAQRGNEPLDDVITLLETPPEQWRDVEDGFNEIAEARELFDFQRRTQAQIKSQGLGSNTLPEYDDMTFREAASIRWGIDPDDEREW
Ga0209964_1039746	Ga0209964_10397462	F038111	MIPSKVAVANKPEYTIWLENYKNIATFIHADVYKYNKTIRQEFGKDLNLLANLHNSPLYVLTHKDNKKLKKFMSIYGLVLDHTPLCDDGIEREVYRLDRRQ
Ga0209964_1044246	Ga0209964_10442466	F099972	RTSRNRGHVMPKANTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDMERKLNEKDN
Ga0209964_1060284	Ga0209964_10602845	F066493	SREWTDGVIDVADELVQEHSAEGAIEHLQRRRQTSDDELQARCNEAIAWIRREVQSDD
Ga0209964_1066430	Ga0209964_10664302	F042291	MPVYQAYNGRIKAWVKYHFVKDGRVEILNVKQREPKKPFKGIPKKGKKK
Ga0209964_1117163	Ga0209964_11171631	F097996	MAINREGMHPRYLGFQVDWPVFVKIPFTADGKQWKKSEHFNWAERNIDTKDAASLYAQGFIYHNTELNKANKVGDRLSEMNAEDLRTVVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNP
Ga0209964_1117163	Ga0209964_11171632	F008719	PGANNLGVSVESFSDDALKRQQVAEHIQVKMAYQMKVTGSDLGGFINSAIS
Ga0209964_1145273	Ga0209964_11452731	F097996	MAINRDGMHPRYLGWQVDWPIFVKVPFTADGKYWKKSEHFNWAERNLEMKDVASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLRAVVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITED
Ga0209964_1150488	Ga0209964_11504881	F097996	MAITTAGMHPRYLGFQVDWPVFVKMPFSADGKHWKKSEHFNWAERGIETKNAATLYAQGFIYHNTELAKANKVGDRLGEMSKDDLYSLVVQLNNIVKKQTTTTKEFNNKKCKQSKIEDKQRGLIRRF
Ga0209964_1160490	Ga0209964_11604902	F005874	MRMRARKATMAMIPNMPPDDDLTPAELYDRVEDITNLTVEELQAFKGSEYNEIYNARKSDAAQRKDEPLDDVIRLLSTEPAEWQDVDDGFNEVDEAEELLNFQRRTQAQIASQGLGENYLTEEEDMTMREAASIRWGIDPDEQREWL
Ga0209964_1162079	Ga0209964_11620792	F066493	MSESREFDDGLIDVADELVKEHSADGAIDRLQRRRESTRSDELADRCLEAIAYIRREVKDNES
Ga0209964_1171295	Ga0209964_11712951	F104555	MRDDNPDNMTAFERLDWILGSPFGGEDLAALPVSDDQTIRQAIRHSIDANGIQATGEHWAAVLDTIGPVPQLYLDTVKVIFNQEVGATF

Scaffold ID

Protein ID

Family

Sequence

Ga0209964_1013365

Ga0209964_10133653

F001506

MNKILFSNRCKCNEEISVIKKRKSTSRSEGKPLQYPKSAEIKWKTFRIKHDGKLSLIAKFILNSFQNKYIYYGIDDILYQFGLSSTEYETLLAILYSPVISLQNNYSVNFFDIWISEIYVEEDSKPNKFLTKKDQTLSQFTYITLKFFYKTKVPTKKQASLW

Ga0209964_1016464

Ga0209964_10164641

F037490

PDRYDALVWALTDLMLKGFAKPKLQLVYSNAKGLR

Ga0209964_1025313

Ga0209964_10253134

F050177

MVRIPSDPPDDELTPRQLYDRFEEVTNLTASELKAFRDSEYNQEYLEGNSDRAQRGNEPLDDVITLLETPPEQWRDVEDGFNEIAEARELFDFQRRTQAQIKSQGLGSNTLPEYDDMTFREAASIRWGIDPDDEREW

Ga0209964_1039746

Ga0209964_10397462

F038111

MIPSKVAVANKPEYTIWLENYKNIATFIHADVYKYNKTIRQEFGKDLNLLANLHNSPLYVLTHKDNKKLKKFMSIYGLVLDHTPLCDDGIEREVYRLDRRQ

Ga0209964_1044246

Ga0209964_10442466

F099972

RTSRNRGHVMPKANTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDMERKLNEKDN

Ga0209964_1060284

Ga0209964_10602845

F066493

SREWTDGVIDVADELVQEHSAEGAIEHLQRRRQTSDDELQARCNEAIAWIRREVQSDD

Ga0209964_1066430

Ga0209964_10664302

F042291

MPVYQAYNGRIKAWVKYHFVKDGRVEILNVKQREPKKPFKGIPKKGKKK

Ga0209964_1117163

Ga0209964_11171631

F097996

MAINREGMHPRYLGFQVDWPVFVKIPFTADGKQWKKSEHFNWAERNIDTKDAASLYAQGFIYHNTELNKANKVGDRLSEMNAEDLRTVVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNP

Ga0209964_1117163

Ga0209964_11171632

F008719

PGANNLGVSVESFSDDALKRQQVAEHIQVKMAYQMKVTGSDLGGFINSAIS

Ga0209964_1145273

Ga0209964_11452731

F097996

MAINRDGMHPRYLGWQVDWPIFVKVPFTADGKYWKKSEHFNWAERNLEMKDVASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLRAVVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITED

Ga0209964_1150488

Ga0209964_11504881

F097996

MAITTAGMHPRYLGFQVDWPVFVKMPFSADGKHWKKSEHFNWAERGIETKNAATLYAQGFIYHNTELAKANKVGDRLGEMSKDDLYSLVVQLNNIVKKQTTTTKEFNNKKCKQSKIEDKQRGLIRRF

Ga0209964_1160490

Ga0209964_11604902

F005874

MRMRARKATMAMIPNMPPDDDLTPAELYDRVEDITNLTVEELQAFKGSEYNEIYNARKSDAAQRKDEPLDDVIRLLSTEPAEWQDVDDGFNEVDEAEELLNFQRRTQAQIASQGLGENYLTEEEDMTMREAASIRWGIDPDEQREWL

Ga0209964_1162079

Ga0209964_11620792

F066493

MSESREFDDGLIDVADELVKEHSADGAIDRLQRRRESTRSDELADRCLEAIAYIRREVKDNES

Ga0209964_1171295

Ga0209964_11712951

F104555

MRDDNPDNMTAFERLDWILGSPFGGEDLAALPVSDDQTIRQAIRHSIDANGIQATGEHWAAVLDTIGPVPQLYLDTVKVIFNQEVGATF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026172: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_D1_MG (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences