3300026098: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3747_4435 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026098
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0127567 | Ga0208318
• Sample Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3747_4435 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 46695928
• Sequencing Scaffolds: 19
• Novel Protein Genes: 23
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
Not Available	14
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD7-C12	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): 8.2514
  • Long. (^o): -49.9993
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F004643	Metagenome / Metatranscriptome	429	Y
F005399	Metagenome / Metatranscriptome	402	Y
F008756	Metagenome	328	Y
F013420	Metagenome	271	N
F015491	Metagenome	254	Y
F022430	Metagenome / Metatranscriptome	214	Y
F023619	Metagenome	209	Y
F025149	Metagenome / Metatranscriptome	203	Y
F033594	Metagenome / Metatranscriptome	177	N
F034208	Metagenome	175	Y
F041821	Metagenome	159	Y
F052875	Metagenome	142	N
F054925	Metagenome	139	Y
F059865	Metagenome	133	Y
F060983	Metagenome / Metatranscriptome	132	Y
F061282	Metagenome / Metatranscriptome	132	N
F063775	Metagenome	129	Y
F077781	Metagenome / Metatranscriptome	117	N
F078820	Metagenome	116	N
F083241	Metagenome	113	N
F084097	Metagenome	112	N
F092722	Metagenome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208318_106764	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum	962
Ga0208318_107658	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	866
Ga0208318_109462	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	729
Ga0208318_109739	Not Available	712
Ga0208318_110904	Not Available	652
Ga0208318_111598	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264	621
Ga0208318_111681	Not Available	617
Ga0208318_111748	Not Available	614
Ga0208318_111823	Not Available	611
Ga0208318_112541	Not Available	583
Ga0208318_112617	Not Available	581
Ga0208318_113127	Not Available	564
Ga0208318_113749	Not Available	545
Ga0208318_114045	Not Available	537
Ga0208318_114349	Not Available	529
Ga0208318_114563	Not Available	524
Ga0208318_114681	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD7-C12	521
Ga0208318_115089	Not Available	511
Ga0208318_115466	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208318_106764	Ga0208318_1067642	F059865	MTSMDDKKTVDQIIANNGEDGAQTVTHIIEYRNQFDGRTTWKLCKGERHYEYEMVAGAFIEPKLIWTQEETT
Ga0208318_107658	Ga0208318_1076581	F077781	PIAAPARPASAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT
Ga0208318_109462	Ga0208318_1094621	F083241	MTPWAMLQYVDIVEPVGDAFTDWEAYASAWENSAAKLMPVGHDDEYKMRYWMAGAPTPGFYMQISTPTFSPDATSVPAP
Ga0208318_109739	Ga0208318_1097392	F004643	LNELAKYHDNEFWEKYGWVSCFECDKIFEDLEKLYEHQNLHIEEESDRHLK
Ga0208318_110904	Ga0208318_1109042	F092722	MYFVVADLPFPITFPANWTGVGVSANEAVSQPVQMPVKVVVYKTTK
Ga0208318_110904	Ga0208318_1109043	F052875	RVAMELAAVQQLVAAVGPIGAMVVIGAWWFVSHQEKRNGAKDQTARLKARDAIIQISADVGHMKKDIADIKADGKTTATTLMQHMAQQHTRGR
Ga0208318_111598	Ga0208318_1115981	F001334	MMKFKEYLQVNADDSIEQIMSGEWISKSRSTWKATDDEDNSLEIHNDGHDPELNGESWTVHKNTFASKAFAHFCKQFIEKVRPAELSYARTRIYPSTSN
Ga0208318_111598	Ga0208318_1115982	F061282	GNIATRGIPLLKKPPKGLVMKRFGGIDVFALDPTYFHKSRLGKKKYTRYSGYVGEDEAGEYIRAFARKYPKKPIIVMDSQTGCMQYLRHGS
Ga0208318_111681	Ga0208318_1116811	F022430	MSDYIYENRQLALWAEYDDLKGRVSFEAFMERHVNVNAYIVNLLNKFGTVSAEIDRSESAKRFAEMDLVQMGD
Ga0208318_111748	Ga0208318_1117482	F060983	LLGQIYIHILNKELEKQKEESEDGKTRKYHFAKPVI
Ga0208318_111823	Ga0208318_1118232	F084097	MNTPLYNQRNQVTGTINADGILLKVGLNPTKHQMKYPPGWAIDTAHLETLENQGGTGVELRTTDGTRFTATLETFKTYGEEIDRGEGKQTVLPLKHWRTQDSKQMTLEL
Ga0208318_112343	Ga0208318_1123431	F015491	MKKTKRQRRVKVPARPQVTPRKWSKKSVRIFDKQFDRFLYDELYVSTKKAWGEEIK
Ga0208318_112541	Ga0208318_1125411	F054925	ADAFHNPDQEKENTNIEESVKNILTNIGKDDILESVKKYWGTDDVVEDSFASERTYINALPENYKEKTLRYINIFKDHPEIVQDYITAIKEWGTEKDAKKAGSTAELLYPTKLLTKVLKNPEYEKDAKRFFMIMNPLQGEKIYDLSLRDDELGILKQKEWQDKTSTKILGGVTDAFQGTVKELTKTVARLVDWG
Ga0208318_112617	Ga0208318_1126172	F063775	FETSNREFIMEEKIDLSLNRSLGELVSSYWEFKDSDEVTTEEESEFGALEDYLEGMGFVSHLM
Ga0208318_113127	Ga0208318_1131272	F041821	MEFKHPKYYKEMRAERRKLQAASIKHQAPETSSDKPQASSDKPQAQAS
Ga0208318_113749	Ga0208318_1137491	F005399	MKTAIELDVFQEMKLEENTGEIVMRSMAEMMDTPLDFIDEEDEPEWIPLLKVLTEQFIDSYTVPASSEVPDEKDYHMMVAASEDLIKVAGDFAKKVEGLHTIEPKEYQERMKRFEQGTFWPTQRTSAEHKMDEE
Ga0208318_113924	Ga0208318_1139243	F008756	VRGVDEHEDFKSRQWTDQKGNSCYNFWDIDAQHPRTAVNCKVREV
Ga0208318_114045	Ga0208318_1140452	F023619	MNKKFYEIIYDCIASGQVSSDRIAKYLEDKGFYKYWKKRNDLL
Ga0208318_114349	Ga0208318_1143492	F025149	MAAKKKIKKMKPAEKLTFLRPEDRLELLEALNGAKNIIDNNLEWGSSSCNDAHDAQHKLNMVAKKLGYKHSVENYYSKYTL
Ga0208318_114563	Ga0208318_1145631	F033594	MSTKTTTAMEYLSCPRADGVVSSLLETFGVEKIDGRYPTGSKADTLRAMADFFAGSKTAIKAVSADVLKRQSVRGKGSRGRITATPESVLSAVRSGKIDADELKSLLATM
Ga0208318_114681	Ga0208318_1146812	F013420	MDTPTDIRQVRIPTVAVGLMLSVAVIVGTVTWSSARLVARIDHLEATVSSIEQTMDMNAYARSVDLEDLQVTVNYLSVALDDLGDMIDDDWSVEN
Ga0208318_115089	Ga0208318_1150892	F078820	MAKIKSRITSKPPKMIKAPYIGSYLEGQQTMGKVYNPSLRKFYGWDNIKPEWTSKA
Ga0208318_115466	Ga0208318_1154662	F034208	RNDKRVKLTRDLGDARLFGEEFQLICGAPDEKGGGEAMYTVGEALQMAQDMNNMPPPKTEVRPKDWNKIFWENIEERNLWKRGSSTFGPLYRKQRNT