 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F060983 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 132 |
| Average Sequence Length | 46 residues |
| Representative Sequence | EMGDAFESLLGQIYIHVLNKELEKQKEESEDGKTRRYDFAKPVI |
| Number of Associated Samples | 111 |
| Number of Associated Scaffolds | 132 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 2.27 % |
| % of genes near scaffold ends (potentially truncated) | 96.21 % |
| % of genes from short scaffolds (< 2000 bps) | 96.97 % |
| Associated GOLD sequencing projects | 104 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.52 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (78.030 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (40.909 % of family members) |
| Environment Ontology (ENVO) | Unclassified (84.848 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (75.758 % of family members) |
| ⦗Top⦘ |
| ⦗Top⦘ |
| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 31.94% β-sheet: 5.56% Coil/Unstructured: 62.50% | Feature Viewer |
|
|
|||||
| Powered by Feature Viewer | |||||
| Structure Viewer | |
|---|---|
|
| |
| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.52 |
| Powered by PDBe Molstar | |
| ⦗Top⦘ |
| Pfam ID | Name | % Frequency in 132 Family Scaffolds |
|---|---|---|
| PF03796 | DnaB_C | 18.94 |
| PF13481 | AAA_25 | 12.12 |
| PF13640 | 2OG-FeII_Oxy_3 | 4.55 |
| PF01555 | N6_N4_Mtase | 3.03 |
| PF07460 | NUMOD3 | 0.76 |
| PF00154 | RecA | 0.76 |
| PF02542 | YgbB | 0.76 |
| COG ID | Name | Functional Category | % Frequency in 132 Family Scaffolds |
|---|---|---|---|
| COG0305 | Replicative DNA helicase | Replication, recombination and repair [L] | 18.94 |
| COG1066 | DNA repair protein RadA/Sms, contains AAA+ ATPase domain | Replication, recombination and repair [L] | 18.94 |
| COG0863 | DNA modification methylase | Replication, recombination and repair [L] | 3.03 |
| COG1041 | tRNA G10 N-methylase Trm11 | Translation, ribosomal structure and biogenesis [J] | 3.03 |
| COG2189 | Adenine specific DNA methylase Mod | Replication, recombination and repair [L] | 3.03 |
| COG0245 | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | Lipid transport and metabolism [I] | 0.76 |
| COG0468 | RecA/RadA recombinase | Replication, recombination and repair [L] | 0.76 |
| ⦗Top⦘ |
| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 78.03 % |
| All Organisms | root | All Organisms | 21.97 % |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| ⦗Top⦘ |
| Habitat | Taxonomy | Distribution |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 40.91% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine | 13.64% |
| Seawater | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater | 6.06% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 5.30% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 5.30% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 5.30% |
| Salt Marsh | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh | 3.03% |
| Marine Oceanic | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic | 2.27% |
| Marine | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine | 2.27% |
| Deep Ocean | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean | 1.52% |
| Seawater | Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater | 1.52% |
| Sackhole Brine | Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine | 1.52% |
| Marine | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine | 1.52% |
| Hydrothermal Vent Fluids | Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids | 1.52% |
| Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 1.52% |
| Seawater | Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater | 0.76% |
| Marine Water | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water | 0.76% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine | 0.76% |
| Seawater | Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater | 0.76% |
| Diffuse Hydrothermal Fluids | Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluids | 0.76% |
| Marine | Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine | 0.76% |
| Hydrothermal Vents | Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents | 0.76% |
| Hydrothermal Vent Fluids | Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Fluids | 0.76% |
| Deep Subsurface | Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface | 0.76% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2061766003 | Hydrothermal vent microbial communities from Guaymas and Carmen Basins, Gulf of California, Sample 457 | Environmental | Open in IMG/M |
| 3300000152 | Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P12 500m | Environmental | Open in IMG/M |
| 3300000173 | Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 500m | Environmental | Open in IMG/M |
| 3300000183 | Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P20 500m | Environmental | Open in IMG/M |
| 3300001969 | Marine microbial communities from Yucatan Channel, Mexico - GS017 | Environmental | Open in IMG/M |
| 3300003153 | Marine microbial communities from deep-sea hydrothermal vent plumes in the Guaymas Basin | Environmental | Open in IMG/M |
| 3300003478 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA | Environmental | Open in IMG/M |
| 3300004278 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_150m | Environmental | Open in IMG/M |
| 3300005057 | Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um | Environmental | Open in IMG/M |
| 3300005398 | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201 | Environmental | Open in IMG/M |
| 3300005422 | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV43 | Environmental | Open in IMG/M |
| 3300005424 | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV49 | Environmental | Open in IMG/M |
| 3300005425 | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV199 | Environmental | Open in IMG/M |
| 3300005514 | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263 | Environmental | Open in IMG/M |
| 3300005551 | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF89A | Environmental | Open in IMG/M |
| 3300005595 | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF47B | Environmental | Open in IMG/M |
| 3300005969 | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_A | Environmental | Open in IMG/M |
| 3300006002 | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_A | Environmental | Open in IMG/M |
| 3300006076 | Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid A | Environmental | Open in IMG/M |
| 3300006091 | Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP125 | Environmental | Open in IMG/M |
| 3300006304 | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_1000m | Environmental | Open in IMG/M |
| 3300006313 | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0770m | Environmental | Open in IMG/M |
| 3300006316 | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_1000m | Environmental | Open in IMG/M |
| 3300006324 | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0500m | Environmental | Open in IMG/M |
| 3300006326 | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0770m | Environmental | Open in IMG/M |
| 3300006331 | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000m | Environmental | Open in IMG/M |
| 3300006335 | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_2_0500m | Environmental | Open in IMG/M |
| 3300006336 | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m | Environmental | Open in IMG/M |
| 3300006338 | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770m | Environmental | Open in IMG/M |
| 3300006340 | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m | Environmental | Open in IMG/M |
| 3300006738 | Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG | Environmental | Open in IMG/M |
| 3300006750 | Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG | Environmental | Open in IMG/M |
| 3300006751 | Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG | Environmental | Open in IMG/M |
| 3300006841 | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT234_2_0200m | Environmental | Open in IMG/M |
| 3300006902 | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_A | Environmental | Open in IMG/M |
| 3300006924 | Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG | Environmental | Open in IMG/M |
| 3300006925 | Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG | Environmental | Open in IMG/M |
| 3300006927 | Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG | Environmental | Open in IMG/M |
| 3300007511 | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7um, replicate b | Environmental | Open in IMG/M |
| 3300007514 | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a | Environmental | Open in IMG/M |
| 3300009104 | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um | Environmental | Open in IMG/M |
| 3300009173 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 | Environmental | Open in IMG/M |
| 3300009409 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 | Environmental | Open in IMG/M |
| 3300009420 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 | Environmental | Open in IMG/M |
| 3300009422 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 | Environmental | Open in IMG/M |
| 3300009481 | Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG | Environmental | Open in IMG/M |
| 3300009593 | Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome | Environmental | Open in IMG/M |
| 3300009595 | Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3635_2500 | Environmental | Open in IMG/M |
| 3300009622 | Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155 | Environmental | Open in IMG/M |
| 3300009705 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 | Environmental | Open in IMG/M |
| 3300009706 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 | Environmental | Open in IMG/M |
| 3300009786 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 | Environmental | Open in IMG/M |
| 3300009790 | Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome | Environmental | Open in IMG/M |
| 3300017775 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17 | Environmental | Open in IMG/M |
| 3300017985 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300020257 | Marine microbial communities from Tara Oceans - TARA_B100000508 (ERX555911-ERR599048) | Environmental | Open in IMG/M |
| 3300020352 | Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144) | Environmental | Open in IMG/M |
| 3300020367 | Marine microbial communities from Tara Oceans - TARA_B100000508 (ERX556112-ERR599005) | Environmental | Open in IMG/M |
| 3300020376 | Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121) | Environmental | Open in IMG/M |
| 3300020382 | Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059) | Environmental | Open in IMG/M |
| 3300020408 | Marine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118) | Environmental | Open in IMG/M |
| 3300021791 | Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer | Environmental | Open in IMG/M |
| 3300021792 | Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Illium_FS922 150_kmer | Environmental | Open in IMG/M |
| 3300021978 | Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Perseverance_CTD_V16A_01_btl17 _150kmer | Environmental | Open in IMG/M |
| 3300022934 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG | Environmental | Open in IMG/M |
| 3300023170 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG | Environmental | Open in IMG/M |
| 3300023176 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG | Environmental | Open in IMG/M |
| 3300024264 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MG | Environmental | Open in IMG/M |
| 3300024339 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_100_MG | Environmental | Open in IMG/M |
| 3300025084 | Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025085 | Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025099 | Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025103 | Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025114 | Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025247 | Marine viral communities from the Deep Pacific Ocean - MSP-91 (SPAdes) | Environmental | Open in IMG/M |
| 3300025267 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes) | Environmental | Open in IMG/M |
| 3300025709 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_130m_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300026091 | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_AAIW_ad_750m_LV_A (SPAdes) | Environmental | Open in IMG/M |
| 3300026098 | Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3747_4435 (SPAdes) | Environmental | Open in IMG/M |
| 3300026186 | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF51B (SPAdes) | Environmental | Open in IMG/M |
| 3300026192 | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV89 (SPAdes) | Environmental | Open in IMG/M |
| 3300026267 | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV259 (SPAdes) | Environmental | Open in IMG/M |
| 3300027779 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes) | Environmental | Open in IMG/M |
| 3300027810 | Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes) | Environmental | Open in IMG/M |
| 3300027838 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes) | Environmental | Open in IMG/M |
| 3300027844 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes) | Environmental | Open in IMG/M |
| 3300027847 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes) | Environmental | Open in IMG/M |
| 3300028022 | Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m | Environmental | Open in IMG/M |
| 3300028190 | Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000m | Environmental | Open in IMG/M |
| 3300028192 | Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m | Environmental | Open in IMG/M |
| 3300028487 | Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_2000m | Environmental | Open in IMG/M |
| 3300028489 | Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1000m | Environmental | Open in IMG/M |
| 3300028535 | Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_500m | Environmental | Open in IMG/M |
| 3300031510 | Marine microbial communities from water near the shore, Antarctic Ocean - #129 | Environmental | Open in IMG/M |
| 3300031519 | Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2 | Environmental | Open in IMG/M |
| 3300031598 | Marine microbial communities from water near the shore, Antarctic Ocean - #284 | Environmental | Open in IMG/M |
| 3300031599 | Marine microbial communities from water near the shore, Antarctic Ocean - #71 | Environmental | Open in IMG/M |
| 3300031606 | Marine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax | Environmental | Open in IMG/M |
| 3300031630 | Marine microbial communities from water near the shore, Antarctic Ocean - #38 | Environmental | Open in IMG/M |
| 3300031659 | Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82 | Environmental | Open in IMG/M |
| 3300031695 | Marine microbial communities from water near the shore, Antarctic Ocean - #233 | Environmental | Open in IMG/M |
| 3300031701 | Marine microbial communities from Western Arctic Ocean, Canada - AG5_Bottom | Environmental | Open in IMG/M |
| 3300031757 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315 | Environmental | Open in IMG/M |
| 3300031766 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515 | Environmental | Open in IMG/M |
| 3300031773 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915 | Environmental | Open in IMG/M |
| 3300031775 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315 | Environmental | Open in IMG/M |
| 3300031801 | Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986 | Environmental | Open in IMG/M |
| 3300031811 | Marine microbial communities from Western Arctic Ocean, Canada - CB11b_Tmax_Bot8 | Environmental | Open in IMG/M |
| 3300032130 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 34915 | Environmental | Open in IMG/M |
| 3300032360 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915 | Environmental | Open in IMG/M |
| 3300034695 | Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2012_500m | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| GB_4MN_02545010 | 2061766003 | Hydrothermal Vents | MIKIPPDLKDKEFSDEMGDTFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFXKPVI |
| LPjun08P12500mDRAFT_10445552 | 3300000152 | Marine | YDMIKIPPDLKDKEFSDEMGDEFESLLGQIYIHVLNKELEKQKEESEDGKTRRYDFQKPII* |
| LPfeb10P16500mDRAFT_10162171 | 3300000173 | Marine | SLLGQIYIHVLNKELEKQKEESEDGKTRRYDFQKPII* |
| LPaug08P20500mDRAFT_10214012 | 3300000183 | Marine | LGQIYIHVLNKELEKQKEESEDGKTRRYDFQKPII* |
| GOS2233_10858863 | 3300001969 | Marine | QEFSDEEGEKFERMLGEVFIDILDQELERRKEESEDGKTRRYDFTKPVV* |
| Ga0052192_10090872 | 3300003153 | Marine | MIKIPPDLKDKEFSDEMGDTFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFXKPVI* |
| JGI26238J51125_11006852 | 3300003478 | Marine | PEFKNKEFSDEEGDEFESLLGKIYIHVLNKELEKQKEESEDGKTRKYHFAKPTL* |
| Ga0066609_102005002 | 3300004278 | Marine | MDEEVSDLAGEEFEYLLGLIYIHVISEELEARKQESEDGKNRKYDFTKPVLN* |
| Ga0068511_10450902 | 3300005057 | Marine Water | PDMMDKEFSDEEGEKFERMLGEVFIDILDQELERRKEESEDGKTRRYDFTKPVV* |
| Ga0066858_100562191 | 3300005398 | Marine | EIGEAFESLLGQIYIHVLNIELEKQKKESEDGTTRRYNFQKPVI* |
| Ga0066829_100428362 | 3300005422 | Marine | AFESLLGQIYIHVLNIELEKQKKESEDGTTRRYNFQKPVI* |
| Ga0066826_101905002 | 3300005424 | Marine | KEFSDEEGENFEFMLGQIYIHILNEQLEKQKEESEDGETRKYHFAKPVV* |
| Ga0066859_100807911 | 3300005425 | Marine | EGEEFEYMLGQIYINILNEELEKQKEESEDGTTRKYHFNKPAL* |
| Ga0066866_102061611 | 3300005514 | Marine | KEFSDEEGENFEFMLGQIYIHILNEQLEKQKEESEDGETRKYDFTKPVV* |
| Ga0066843_101161062 | 3300005551 | Marine | DEEGEEFEYMLGQIYINILNEELEKQKEESEDGTTRKYHFNKPAL* |
| Ga0066833_100394162 | 3300005595 | Marine | EFEYMLGQIYINILNEELEKQKEESEDGTTRKYHFNKPTV* |
| Ga0066369_102334972 | 3300005969 | Marine | PEMDEEVSDLEGEDFEYLLGQIYIHVINEELEIQKQESEDGKNRKYDFNKPVLN* |
| Ga0066368_100400202 | 3300006002 | Marine | GKLEMLLGQIYLNIINEELEHQKTESEDGTTRSYHFAKPTL* |
| Ga0081592_11459731 | 3300006076 | Diffuse Hydrothermal Fluids | MIKIPPDLKDKEFSDEMGDAFESLLGQIYIHVLNKELEKQKEESEDGKTRRYDFAKPVI* |
| Ga0082018_10516971 | 3300006091 | Marine | DEDGGELEMLLGQIYLNILNEELELQKTESEDGTHRKYDFTKPII* |
| Ga0082018_11055391 | 3300006091 | Marine | FESLLGQIYIHVLNKELEKQKEESEDGKTRKYHFAKPTL* |
| Ga0068504_10899972 | 3300006304 | Marine | MGDEFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFAKPVI* |
| Ga0068472_108149381 | 3300006313 | Marine | DGEMLECILGQVYIHILNEELEQQKEVSEDGKTRKYDFTKPVI* |
| Ga0068473_12504242 | 3300006316 | Marine | VRFEYDMIKIPPDLKDKEFSDEMGDAFESLLGQIYIHVLNKELEKQKEESEDGKTRRYDFAKPVI* |
| Ga0068473_16767671 | 3300006316 | Marine | LGLIYIHVLNKELEKQKEESEDGTTRRYDFAKPVI* |
| Ga0068476_12250531 | 3300006324 | Marine | DMIKIPPDLKDKEFSDEEGDVFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFAKPVI |
| Ga0068477_14848521 | 3300006326 | Marine | PDLKDKEFTDEMGDAFESLLGQIYIHVLNKELEKQKEESEDGKTRRYDFAKPVI* |
| Ga0068488_13610742 | 3300006331 | Marine | FESLLGQIYIHILNKELEKQKEESEDGTTRRYDFAKPVI* |
| Ga0068488_15169812 | 3300006331 | Marine | DEFESLLGQIYIHVLNKELEKQKEESEDGKTRRYDFAKPVI* |
| Ga0068480_14300111 | 3300006335 | Marine | EMGDAFESLLGQIYIHVLNKELEKQKEESEDGKTRRYDFAKPVI* |
| Ga0068502_12881143 | 3300006336 | Marine | KVKEFSDEEGDAFESLLGQIYIHVLNKELEKQKEESEDGKTRRYDFAKPVI* |
| Ga0068502_14246942 | 3300006336 | Marine | DVFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFAKPVI* |
| Ga0068482_13418822 | 3300006338 | Marine | LKDKEFSDEMGDAFESLLGQIYIHVLNKELEKQKEESEDGKTRRYDFAKPVI* |
| Ga0068482_13745682 | 3300006338 | Marine | DMIKIPPDLKDKEFSDEMGDAFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFAKPVI |
| Ga0068503_103164641 | 3300006340 | Marine | MIKIPPDLKDKEFSDEMGDAFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFAKPVI* |
| Ga0068503_104447741 | 3300006340 | Marine | MGEEFESLLGQIYIHVLNKELEKQKEESEDGKTRRYDFQKPII* |
| Ga0098035_11063851 | 3300006738 | Marine | IPPDLKDKEFSDEMGDAFESLLGQIYIHVLNIELEKQKEESEDGTTRKYDFAKPVI* |
| Ga0098058_12101021 | 3300006750 | Marine | IPPDLKDKEFSDEMGDAFESLLGQVYIHVLNIELEKQKEESEDGTTRKYDFAKPVI* |
| Ga0098040_11343632 | 3300006751 | Marine | DEEVSDIEGEEFEYLLGQIYIHVINEELEIQKQESEDGKNRRYHFTKPAL* |
| Ga0068489_1217151 | 3300006841 | Marine | DKEFSDHEGEELELLLGQVYLQILNEELEKRKEENEDGTHRRYDFTKPVV* |
| Ga0066372_109900201 | 3300006902 | Marine | FESLLGQIYIHVLNKELEKQKEESEDGKTRRYDFQKPVV* |
| Ga0098051_10248603 | 3300006924 | Marine | FEFMLGQIYIHILNEQLEKQKEESEDGETRKYDFTKPVV* |
| Ga0098050_10675712 | 3300006925 | Marine | GDLELLLGQIYLNILNEELEHQRTESEDGTHRKYDFTKPIV* |
| Ga0098034_10770452 | 3300006927 | Marine | GQIYIHVLNIELEKQKEESEDGTTRRYDFAKPVI* |
| Ga0098034_11773411 | 3300006927 | Marine | GQIYIHVLNIELEKQKEESEDGTTRRYDFNKPILDKPNL* |
| Ga0105000_12907791 | 3300007511 | Marine | MMEKEFSDEEGEVFEKMLGEVFIDILDQELERRKEESEDGKTRKYDFSKPVLDKKE* |
| Ga0105020_14484762 | 3300007514 | Marine | FTDEEGEEFEYMLGQIYINILNEELEKRKEESEDGTTRKYHFNKPAI* |
| Ga0117902_18130341 | 3300009104 | Marine | HEGEELELLLGQVYLQILNEELEKQKEENEDGTHRRYDFTKPVV* |
| Ga0114996_104716322 | 3300009173 | Marine | SDEMGDDFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFTKPII* |
| Ga0114996_106026693 | 3300009173 | Marine | SDEMGDDFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFNKPILDKPNL* |
| Ga0114996_108975421 | 3300009173 | Marine | EDFEYLLGQIYIHVINEELETQKQESEDGKNRKYDFNKPVLN* |
| Ga0114993_106014282 | 3300009409 | Marine | LLGQIYIHVINEELETQKQESEDGKNRKYDFNKPVLN* |
| Ga0114994_104299932 | 3300009420 | Marine | FESLLGQIYIHVLNKELEKQKEESEDGKTRRYDFAKPIV* |
| Ga0114998_104387702 | 3300009422 | Marine | EEVSDLEGEDFEYLLGQIYIHVINEELETQKQESEDGKNRKYDFNKPILN* |
| Ga0114932_108094482 | 3300009481 | Deep Subsurface | LLGQIYLNILNEELEHQKTESEDGTHRKYDFSKPVV* |
| Ga0115011_118358862 | 3300009593 | Marine | EYEMIGIPPDFEGKEFSDEEGENFEYMLGQIYIHILNEQLEKQKEESEDGTNRKYDFTKPVI* |
| Ga0105214_1206931 | 3300009595 | Marine Oceanic | KEFSDEEGDTFESLLGQIYIHILNKELEKQKEESEDGTTRKYHFAKPVI* |
| Ga0105173_10725702 | 3300009622 | Marine Oceanic | GEEFEYLLGQIYIHVINEELEMQKQESEDGKNRKYDFNKPVLN* |
| Ga0115000_103535301 | 3300009705 | Marine | EDFEHLLGLIYIHVINEELETQKQESEDGKNRKYDFNKPVLKEKNENKI* |
| Ga0115000_105600151 | 3300009705 | Marine | EDFEHLLGLIYIHVINEELETQKQESEDGKNRKYDFNKPVLKEKNEI* |
| Ga0115002_103636681 | 3300009706 | Marine | KEFSDEMGDDFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFQKPVI* |
| Ga0115002_107882191 | 3300009706 | Marine | EIGDTFESLLGQIYIHVLNKELEKQKEEREDGKHRKYVFAKPVLN* |
| Ga0114999_102408701 | 3300009786 | Marine | DLEGEDFEYLLGQIYIHVINEELETQKQESEDGKNRKYDFTKPVLN* |
| Ga0114999_103018651 | 3300009786 | Marine | DLEGEDFEYLLGQIYIHVINEELETQKQESEDGKNRKYDFNKPVLN* |
| Ga0114999_105980771 | 3300009786 | Marine | EMGDDFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFNKPILDKPNL* |
| Ga0114999_108701962 | 3300009786 | Marine | DLKDKEFSDEEGDEFESLLGQIYIHVLNKELEKQKEESEDGKTRRYNFQKPVI* |
| Ga0115012_105898221 | 3300009790 | Marine | GQIYIHILNEQLEKQKEESEDGETRKYDFTKPIV* |
| Ga0181432_12053911 | 3300017775 | Seawater | KEFSDEMGDAFESLLGQIYIHVLNKELEKQKEESEDGKTRRYDFAKPVI |
| Ga0181432_12684791 | 3300017775 | Seawater | SEEGDAFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFNKPIV |
| Ga0181576_101934552 | 3300017985 | Salt Marsh | GIPPDMMDKEFSDEEGEKFERMLGEVFIDILDQELERRKEESEDGKTRRYDFSKPVLDKK |
| Ga0211704_10602332 | 3300020257 | Marine | EEGEKFERMLGEVFIDILDQELERRKEESEDGKTRRYDFTKPVV |
| Ga0211505_11188392 | 3300020352 | Marine | EEVSDIEGEEFEYLLGQIYIHVINEELEIQKQESEDGKNRRYHFTKPAL |
| Ga0211703_101129052 | 3300020367 | Marine | DMMDKEFSDEEGEKFERMLGEVFIDILDQELERRKEESEDGKTRRYDFTKPVV |
| Ga0211682_100291363 | 3300020376 | Marine | DLEGEDFEYLLGQIYIHVINEELEIQKQESEDGKNRKYDFNKPVLN |
| Ga0211686_100325571 | 3300020382 | Marine | DEEVSDLEGEEFEYLLGQIYIHVINEELEMQKQESEDGKNKKYDFNKPVLN |
| Ga0211651_102622791 | 3300020408 | Marine | PDMMDKEFSDEEGEKFERMLGEVFIDILDQELERRKEESEDGKTRRYDFTKPVV |
| Ga0226832_103220692 | 3300021791 | Hydrothermal Vent Fluids | FSDDEGEMLESILGQVYIHILNEELEQQKEVSEDGKTRKYDFTKPVV |
| Ga0226836_105962732 | 3300021792 | Hydrothermal Vent Fluids | PDLKDKEFSDEEGDAFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFAKPVI |
| Ga0232646_11818832 | 3300021978 | Hydrothermal Vent Fluids | EFSDEMGDAFESLLGQIYIHILNKELEKQKEESEDGTTRKYHFAKPVI |
| Ga0255781_102607251 | 3300022934 | Salt Marsh | FSDEEGEKFERMLGEVFIDILDQELERRKEESEDGKTRRYDFTKPVV |
| Ga0255761_103099251 | 3300023170 | Salt Marsh | EFSDEEGEKFERMLGEVFIDILDQELERRKEESEDGKTRRYDFTKPVV |
| Ga0255772_102236731 | 3300023176 | Salt Marsh | GIPPDMMDKEFSDEEGEKFERMLGEVFIDILDQELERRKEESEDGKTRRYDFTKPVV |
| (restricted) Ga0233444_102026012 | 3300024264 | Seawater | AGEEFEYLLGLIYIHVISEELEARKQESEDGKNRKYDFTKPVLN |
| (restricted) Ga0233445_11470611 | 3300024339 | Seawater | EFKNKEFSDEEGDEFESLLGKIYIHVLNKELEKQKEESEDGKTRKYHFAKPTL |
| Ga0208298_10587392 | 3300025084 | Marine | FEFMLGQIYIHILNEQLEKQKEESEDGETRKYDFTKPVV |
| Ga0208792_10260062 | 3300025085 | Marine | GDLELLLGQIYLNILNEELEHQRTESEDGTHRKYDFTKPIV |
| Ga0208669_11242451 | 3300025099 | Marine | FSDEEGGDLELLLGQIYLNILNEELEHQKTESEDGTTRSYDFTKPVV |
| Ga0208013_11420141 | 3300025103 | Marine | GDLELLLGQIYLNILNEELEHQRTESEDGTTRSYDFTKPVV |
| Ga0208433_10294442 | 3300025114 | Marine | MLGQIYIHILNEQLEKQKEESEDGETRKYDFTKPVV |
| Ga0207880_10166092 | 3300025247 | Deep Ocean | FEYDMIKIPPDLKDKEFSDEMGDAFESLLGQIYIHILNKELEKQKEESEDGTTRRYDFTKPII |
| Ga0208179_10312731 | 3300025267 | Deep Ocean | DLKDKEFSDEMGDAFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFNKPIV |
| Ga0209044_10990062 | 3300025709 | Marine | EEFEYLLGLIYIHVISEELEARKQESEDGKNRKYDFTKPVLN |
| Ga0207962_10597072 | 3300026091 | Marine | AFESLLGQIYIHVLNKELEKQKEESEDGKTRRYDFAKPVI |
| Ga0208318_1117482 | 3300026098 | Marine Oceanic | LLGQIYIHILNKELEKQKEESEDGKTRKYHFAKPVI |
| Ga0208128_10727302 | 3300026186 | Marine | EFEYMLGQIYINILNEELEKQKEESEDGTTRKYHFNKPAL |
| Ga0207986_10416452 | 3300026192 | Marine | FTDEEGEEFEYMLGQIYINILNEELEKQKEESEDGTTRKYHFAKPVV |
| Ga0208278_11279282 | 3300026267 | Marine | LEDKEFTDEIGEAFESLLGQIYIHVLNIELEKQKKESEDGTTRRYNFQKPVI |
| Ga0209709_102674301 | 3300027779 | Marine | IHVLNKELEKQKEESEDGTTRRYDFNKPILDKPNL |
| Ga0209302_103434451 | 3300027810 | Marine | LLGLIYIHVINEELETQKQESEDGKNRKYDFNKPVLN |
| Ga0209089_103477763 | 3300027838 | Marine | FSDEMGDDFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFNKPILDKPNL |
| Ga0209501_104093043 | 3300027844 | Marine | DDFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFNKPILDKPNL |
| Ga0209501_104670443 | 3300027844 | Marine | ELEEMLGQIYIHFLNEELEHRKEESEDGKTRKYDFNKPIA |
| Ga0209402_103713683 | 3300027847 | Marine | EMGDDFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFNKPILDKPNL |
| Ga0256382_11109612 | 3300028022 | Seawater | SLLGQVYIHVLNKELEKQKEESEDGTTRKYHFAKPVI |
| Ga0257108_11693412 | 3300028190 | Marine | LLGQIYIHILNKELEKQKEESEDGTTRRYDFAKPVV |
| Ga0257107_10731891 | 3300028192 | Marine | DEDGDELEMLLGQIYLNILNEELELQKTESEDGTHRKYDFTKPII |
| Ga0257109_11572782 | 3300028487 | Marine | GEELEEMLGQIYIHFLNEELEHRKEESEDGKTRKYDFTKPFV |
| Ga0257112_100472571 | 3300028489 | Marine | ESLLGQIYIHVLNKELEKQKEESEDGKTRRYDFAKPII |
| Ga0257111_11641991 | 3300028535 | Marine | LKDKEFTDEMGDTFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFAKPVV |
| Ga0308010_11189913 | 3300031510 | Marine | LGQIYIHVINEELEIQKQESEDGKNRKYDFNKPVLREKK |
| Ga0307488_104418353 | 3300031519 | Sackhole Brine | YLLGQIYIHVINEELETQKQESEDGKNRKYDFNKPVLN |
| Ga0307488_104571462 | 3300031519 | Sackhole Brine | VSDLEGEDFEYLLGQIYIHVINEELETQKQESEDGKNRKYDFTKPVLN |
| Ga0308019_101325993 | 3300031598 | Marine | VSDLEGEDFEYLLGQIYIHVINEELEIQKQESEDGKNRKYDFNKPVLREKK |
| Ga0308019_101834992 | 3300031598 | Marine | FEYLLGLIYIHVVSEELEAHKQETEDQKHRKYDFTKPVLKERNEI |
| Ga0308007_101832881 | 3300031599 | Marine | EYLLGQIYIHVINEELEIQKQESEDEKNRKYDFNKPVLN |
| Ga0302119_103900281 | 3300031606 | Marine | ELEDKEFSDEIGDTFESLLGQIYIHVLNKELEKQKEESEDGTTRRYNFQKPVI |
| Ga0308004_100835592 | 3300031630 | Marine | LAGEEFEYLLGLIYIHVVSEELEAHKQETEDQKNKKYDFTKPVLN |
| Ga0307986_102890211 | 3300031659 | Marine | GQIYIHVINEELEIQKQESEDGKNRKYDFNKPVLN |
| Ga0308016_101859763 | 3300031695 | Marine | YLLGQIYIHVINEELEIQKQESEDGKNRKYDFNKPVLKEKK |
| Ga0302120_101407131 | 3300031701 | Marine | TFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFAKPVI |
| Ga0302120_101648342 | 3300031701 | Marine | LLGQIYIHVLNKELEKQKEESEDGTTRRYDFAKPVI |
| Ga0315328_101825572 | 3300031757 | Seawater | EGEEFEYLLGQIYIHVINEELEIQKQESEDGKNRRYHFTKPAL |
| Ga0315328_106826291 | 3300031757 | Seawater | FSDEEGDTFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFQKPVI |
| Ga0315322_105574872 | 3300031766 | Seawater | SDEEGENFEFMLGQIYIHILNEQLEKQKEESEDGETRKYDFTKPVV |
| Ga0315322_109916281 | 3300031766 | Seawater | ESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFAKPVI |
| Ga0315332_105455312 | 3300031773 | Seawater | GENFEFMLGQIYIHILNEQLEKQKEESEDGETRKYDFTKPVV |
| Ga0315326_107185091 | 3300031775 | Seawater | ESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFAKPVV |
| Ga0310121_106541202 | 3300031801 | Marine | PDLKDKEFTDEMGDTFESLLGQIYIHVLNKELEKQKEESEDGTTRRYDFAKPVI |
| Ga0310125_105629042 | 3300031811 | Marine | KEFTDEEGDTFESLLGQIYIHVLNKELEKQKEESEDGKTRKYHFAKPTL |
| Ga0315333_104805881 | 3300032130 | Seawater | DFEGKEFSDEEGENFEFMLGQIYIHILNEQLEKQKEESEDGETRKYDFTKPVV |
| Ga0315334_117446502 | 3300032360 | Seawater | ESLLGQIYIHVLNKELEKQKEESEDGKTRRYDFAKPVI |
| Ga0372840_099088_3_158 | 3300034695 | Seawater | KDKEFSDEMGDEFESLLGQIYIHVLNKELEKQKEESEDGKTRRYDFQKPII |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |