3300025834: Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - lysozymeSSSS metaG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025834
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0141793 | Ga0209100
• Sample Name: Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - lysozymeSSSS metaG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 585805720
• Sequencing Scaffolds: 40
• Novel Protein Genes: 40
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	1
All Organisms → cellular organisms → Bacteria	1
Not Available	12
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → unclassified Prolixibacteraceae → Prolixibacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium GWF2_41_31	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Chondromyces → Chondromyces apiculatus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → glacial valley → ice
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Borup Fiord, Nunavut, Canada
• Coordinates
  • Lat. (^o): 81.017
  • Long. (^o): -81.583
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003850	Metagenome / Metatranscriptome	465	Y
F005862	Metagenome / Metatranscriptome	388	Y
F017253	Metagenome	242	Y
F021141	Metagenome	220	Y
F029737	Metagenome	187	Y
F029738	Metagenome	187	Y
F032009	Metagenome / Metatranscriptome	181	Y
F040969	Metagenome	160	Y
F041962	Metagenome	159	Y
F043059	Metagenome	157	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209100_1002692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10759
Ga0209100_1003590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	8777
Ga0209100_1004267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7883
Ga0209100_1006823	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	5766
Ga0209100_1007927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	5232
Ga0209100_1014177	All Organisms → cellular organisms → Bacteria	3620
Ga0209100_1015589	Not Available	3409
Ga0209100_1021202	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	2823
Ga0209100_1031032	Not Available	2239
Ga0209100_1036760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium	2014

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209100_1002692	Ga0209100_10026928	F045483	MAKSRRLFSGLSVLGLSLFVLTGCVVPGGYDVNTLHLLPEAALVYPGSTGVHTNDYNGRPGNYVSKGAVARTGKSATTTHTQLEVLAYFSRTLAADGWNQTQENVRAATPEGLPAHWVAWDKPKLHLSYFVEVWTVGEATKYYTQFGSNE
Ga0209100_1003590	Ga0209100_10035909	F045483	VTETRRQSTPLANPRRLVSGLSVLSLSLLVLTGCAVPGGYDVNSLHLQPESALVYPGSTDVHTNYYNGSPGNYVSKGAVASIGNLATTIHTQLEVFAFFSQTLAADGWTQNGKSDQETTPEGLPASTISWGKQSLHLSYSVEAWREGETTKYWTRISSDE
Ga0209100_1004267	Ga0209100_10042679	F040969	MTREKWLSLGLRWAAHPVFEAGTLRTVEAAGTAVVGIPKHGSGHHVLGIASSGEEATVIATMLRLFNPN
Ga0209100_1006823	Ga0209100_10068236	F056237	VTYNDRALCRCGIRIPTARNRCPAFDKDKCLEPMFGDVGQARTKAAMLLMMIDTTSSRTCTKPTVACCAVLC
Ga0209100_1007927	Ga0209100_10079273	F045483	LTGCTYPGGYVVNTLHLLPESGLIYPGSTGVHTNDYGGSPGNYVSKGAVAVTGKSATTIHTQLEVLAFFYKTLSADGWTQLRRSDNEITPEGIPARAATWLKKSLHLSYLVEVWTVGETTRYDTELSADE
Ga0209100_1014177	Ga0209100_10141773	F029738	MTHYSNDPRQITAKFSSSCSKCKTKIKKGATIYYWPSSREVFCTSCGDAPYRQFLSSAADKDVYSSKENPYAW
Ga0209100_1015589	Ga0209100_10155891	F074174	AADRGIGDAIRSGFGRCVSQSTRGERVIDLSERTRRISGSRLLEILQSYDAKSVIDPFMGYPAHLNFLKRHGIAVHGGDLVDWFVRAGEGLVVNDLTILRDSEVAEIVEMLPGRIYPMDLFKGWDGVFFTEEQCIYLGVWHSNVHNLRSDGQTGLAIAGLWHVLCYWLQKSKYPDDMADLPPSELAWNYIRETEHLVTQNAQRNTVRRGDFNATLGSIQADAVFIAPPGRNAHKKADARVWMWEAWWQGDPYLNIERYYRDTIFVQRTNEDSSYDRALGAVFSAAESSPLLVLQTTLQNAAHFKTVMSEFRPHIEIISPHADETYVVGRR
Ga0209100_1021202	Ga0209100_10212023	F032009	MKKKILIAFLFVVCISYQCLSQTYISLAPSVTNTAGTFAEKSNIAFELGKQWDVFSLGIDFGKTTLEPVTGRDTSNYLELRPNLNIFQEGKFTNTFTAGIGYIFNAKESLLTELTYGIEYSFSEKIHYNVFFGQYFYSGKTSASNVSFFGVSAAYYFSPNKGGSIIKRSTVKN
Ga0209100_1031032	Ga0209100_10310321	F029737	ASQKSFEKLNYIFIRDMHKYIRKSTVYDSIFFKTILYYSVNITLTAAWIKLLKDFNSDKYNNILRFSPDFNHSIGVPDAIKKSVRQQHQR
Ga0209100_1036760	Ga0209100_10367602	F045483	MANPRRLFSGLSVLGLSLFVLTGCVVPGGYDVNSLHLLPEAALVYPGSTDVHTNDYGGSPGNYVSKGAVAVTGKSAITTHTQLEVLAYFSRTLAADGWKQTQENVRAATPEGLPAHWVAWDKPKLHLSYF
Ga0209100_1040490	Ga0209100_10404903	F041962	MSSNYLAPTSPELEREWGLTIDDEWPTDAGAGDLVPIIRRFGVGDAAQKELVLARF
Ga0209100_1044528	Ga0209100_10445281	F083559	HTVREFGVEARRPGKAWEAAFNGPIQTWLDAETHERTYGVTVRLSRMKDMFTRELYSTNILFYLAEDDMAGMHNIYDMARTLPFMRIRGPRTPVPYCPPRPGKLWYDANPEGVIMEDVRLAPVTLPDGRAGFFATGQGYRGKVMLPDGLFIHDVGVYGGYLDPDERPGQLELTHLFGGIEFGAQKTGSQEDLFLTELGENIWVKGIVGNVTEEMHVESYKNSVRLPSPLPERTLIGARSMSETKLLPYFGTSDPESLRGYSLRGFIDGLPGAIGSDVWARVVRVGLGSNFVACPEEGGYLGLIHVVLERNEPAHPETLDPSYPKIEEQYEGWMVRLDFDADDRPLFKSCVRAITPNDVPHCYNGLGELFDTKRVAFPISLYRTGDTLAAAYGWGDRALFQAEFDYRDVVRRLAA
Ga0209100_1044635	Ga0209100_10446353	F045483	MTKPRRLVLGLSVLGVSLLLLTGCAVPGGQSINSLHVLHESGLVYPGSTGVHTNDYGGSPGNYVSKGAVAATGKAATTVHTQLEVLAYFSKTLAADGWTQIAQDDTATTPEGFRAKDISWVKNSLHLSYLVRTWTVGETTQYFTLLNANE
Ga0209100_1049488	Ga0209100_10494884	F045483	CVVPGGYDVNSLHLLPESALVYPGSTGVDPYDYGGSPGNYVSKGAVAVTGKSATTIHTQLEVLAYFSQTLAADGWTQIGEDDRGTTPEGIPSKGIAWVKDSLHLSYLVTVWTVGETTHYDTQLSANE
Ga0209100_1055599	Ga0209100_10555992	F069623	MKTTMEVNTQQHVYALQHIDSGEYICLLQEGINYLACFSDGDSALEFRSLLGLQEHVDLCSTTMDRSPFSHFWLDGESVNLPQVPEMAN
Ga0209100_1062910	Ga0209100_10629101	F029737	KSFEKLNYIFIRDMHKYIRKSTVYDSIFFKTILNYSVNITLTAAWIKLLKDFNSDKYNNILRFSPDFNHSTGVPGAIKKSVRQQHQR
Ga0209100_1069129	Ga0209100_10691291	F056237	NDRALCRCGIRIPSARNRCPAFDKDKYLEPMFGYVGHARTNAAMLLLPIDTTSSRTCTKPTVVR
Ga0209100_1073392	Ga0209100_10733921	F056237	PNVRALCRCGIRIPSARNRCPAFDKDKYLEPMFGDVGQARTNAAMLLMPIATTLSRTCTKPIVVCCLYFSLR
Ga0209100_1081276	Ga0209100_10812761	F029737	MTEFEFLEELEASQKSFEKLNYIFIRDMHKYIRKSTVYDSIFFKTILNYSVNITLTAAWIKLLKDFNSDKYNNILRFSPDFNHPTGVPDAIKKSVRQQHQR
Ga0209100_1081764	Ga0209100_10817641	F003850	MTMPPTHFLGDLGPQAQMMSKNCNNERMAMVLQSVALGSMIVMAGAAASHVLRDAFWPSRHDRDRAR
Ga0209100_1095874	Ga0209100_10958742	F056237	MSHFSIAGNDRALCRCGIRIPSARNRCLAFTKDKYLELMFGDVGQAQTNAAMLLLLIDTTSSRTCTKPIVTCMCFSIFN
Ga0209100_1098420	Ga0209100_10984201	F056237	GCRNMVSHNVRALCRCGISIPSARNRYPAFDKDKYLEPMFGDVGQARTNAAMLLLMIATTSSHTCTKPTVACCAICLQV
Ga0209100_1115852	Ga0209100_11158521	F005862	VTDTPQAMEEDAATRIRELEARLVAHGIVLQSIARLLSEQTLTELKAVAQGIDNEGMQESNPDPHMRRVAEELWSILEMTG
Ga0209100_1130442	Ga0209100_11304421	F056237	LCGRCGISIPSARNHSPAFDKVKCLKPMFGDVSQAQTNAAMLLMPIATTSSRTCTKPTVGGSFSPSID
Ga0209100_1147283	Ga0209100_11472831	F075009	VTFGGITAAGVALAATSFPMLVPFYLALGGRFLGTVRAVKRVNEASVALSKGDSVLGRALAEPVTRAWWAPARVRALAELRVAIADALEGHGEKALDRVRHARAKLSPRLIQHQFSHYTEINLLTALGRTKEARAILEARGGVPQGEVLKLSYWIAEMHLWVAEPPARLDLDDGELHDRMRKGLSMTAGADLLLLCSWAYAFKGEHDEARFAWRQSKEREGSQRLEISMPKLAAWMEQYRAQHPEVDEPEPDPIDEL
Ga0209100_1149004	Ga0209100_11490041	F076557	ALDMTTSLLRFDGPSQQSRIQLVRLLKEFPQVSFQERAASEYEVTAADEAALRALAVKPGWSLIRNQ
Ga0209100_1153387	Ga0209100_11533871	F017253	IYGIALIMTHNVGSYTQGRIAGDFLSSRKAARAERYTPKTTAAALDG
Ga0209100_1154969	Ga0209100_11549692	F056237	AIIAGNDRALCRCGIRIPSARYRCLAFDKDKYLELMFGDVGQARTNAAMLLLMIATTLSRTCTKPTVMCRTFSLSIF
Ga0209100_1160680	Ga0209100_11606801	F045483	MSETLRSEPSVTRRQSTLLANPRRLFSGLSVLGISLLLLTGCVVPGGYDVNSLHQLPEAALVYPGSTGVDPYDYNGRPGNYIGKGAVAVTGKSATTIHTQLEVLAYFSQTLAADGWTKIGENDRGTTAEGIPSKDIAWVKNRLHLSYLVVVWTVGEATHYDTQLSANE
Ga0209100_1169712	Ga0209100_11697121	F043461	SVALRSVPRFAIGTRPTATVVNLGARAIEMKRGGATGRELPRGEQLWTGQCTLVAGATIPYFGFGLKMFAFASTRTHAFHLRCGDAGLFEIMRNAPAAFRGDYFSDHVSDFMCDRVEISLDREAAIEAGGELLGRRSKVELALGTPITVISLAP
Ga0209100_1172348	Ga0209100_11723481	F092239	MRRLAFAALAIMLASQTGCPDDPYKAKTWTKKLTDPREAERAVTQLEQLGDPSAIPSLGDAWVAQGKPVRVLQVIISLARPLTPEQAKSSFTTDYESAGRPASWTAALPYLQKALAEVDEANPRSVDSAQKAADALGEARIDGGLDGLIDIASKPVTKKLIAAEVSAIRAIGKYDGEKAKAAGALQKI
Ga0209100_1183486	Ga0209100_11834861	F056237	SLLIAYNDRALCRCGIRIPSARNHCPAFDKDKYLEPMFGVVGQARTNAAMLLLMIATISSRTCTKPTVMCRTSSLSIF
Ga0209100_1183994	Ga0209100_11839941	F076572	IYLFIVFLTLGCTQVSVPNCEQDYTFSMEFTNGTNDPYDLYINDSFQQKVQPKSIVTYDIPAGYWSAEVVQISGYNLNQIDKFYSGTYESCTSYFIVF
Ga0209100_1202784	Ga0209100_12027841	F056237	LCRCGIRIPSARNRRPAFDKDKYLELMFGDVCQARTNAAMLLLPIATTSSHTCTKPVVGCRLV
Ga0209100_1208440	Ga0209100_12084401	F069623	MKTTMEMNTKQSVFALQHIDSGEYICLLQEGIDYLACFSDGDSALEFRSLLGLHEHVDLCSTTMDRSPFSHFWLDGESVNLLQVPELAN
Ga0209100_1229500	Ga0209100_12295001	F097562	HAAVFNRRRNELIPASLSCNREATRAFIRGRHLVNRDAKSQSSLIALARTRRMQRALAHAYLHQNAPLPTLRLSLGFMMQTACTTEDVAGLGHRMTVLGVDKREACAYVIEELSPSDAPIVYRLFLAGPRMGHLVPIQSWYEHDPNAAEIRARVHMLELERCTKTTTEAWMLSTRVVQRRALRVAGQELPIRKFALQLRLE
Ga0209100_1233301	Ga0209100_12333012	F079908	VSSAETESEKKESVALASLRREALLPNERGRGLGTVAVVCTMAGVASGLALATTLMAMQVADSMSVRNCPYHLVQDTQPIDVRADHGFLGVHYKFHDNGADIIGVLPGTP
Ga0209100_1253469	Ga0209100_12534691	F021141	LRVRWLATDGVPGDGYKAQVTAIKLPKGVSLAMDASSILEQSHADVSGGLGAYSVTFQGMVGYAHDHPDRAHVDGFEDQEIEYVLEFVHEESGRVAVDNEDYKVVEQPRGWAHKLNKRAPSQPASES
Ga0209100_1254574	Ga0209100_12545741	F073680	ARARAMLATGDGDSAREVLAAALVVYPRSRSLRALYLVATAIVAVLRGEVMLAISQLETALAHYEQSIEATMLLEHVKKYGAERSDEMRRVFQ
Ga0209100_1278839	Ga0209100_12788391	F043059	PAEPIGPNNPAALAAIRAAYIKAGEQKYFRARMTSESAGKISESTVEFAAPASMHMVMKTDNVEQIVINGTHYLKTDGKWMRLPISSGNLIEQMRKDPAAIAAFEKTISGAQIIGPDPVNNKPAMAYRYYQAATVGGGLASSAGWVKFWVGANGLPLKLESDTVGRVLGFSSQS