NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025824

3300025824: Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_330m (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025824 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0111485 | Gp0191390 | Ga0208325
Sample NameFreshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_330m (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size341382689
Sequencing Scaffolds39
Novel Protein Genes39
Associated Families35

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica1
All Organisms → cellular organisms → Archaea4
Not Available20
All Organisms → cellular organisms → Archaea → Euryarchaeota → Candidatus Methanoliparia → Candidatus Methanoliparales → Candidatus Methanollivieraceae → Candidatus Methanolliviera sp. GoM_asphalt1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium 4484_2551
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_71
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biomefreshwater lakelake water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationCanada: British Columbia
CoordinatesLat. (o)50.0621Long. (o)-124.7214Alt. (m)N/ADepth (m)330
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005111Metagenome / Metatranscriptome411Y
F008068Metagenome / Metatranscriptome339Y
F008802Metagenome327Y
F016922Metagenome243Y
F021062Metagenome / Metatranscriptome220Y
F024682Metagenome / Metatranscriptome205Y
F029893Metagenome / Metatranscriptome187Y
F032299Metagenome / Metatranscriptome180Y
F033040Metagenome178Y
F034800Metagenome173Y
F036057Metagenome170Y
F036104Metagenome / Metatranscriptome170Y
F036460Metagenome / Metatranscriptome170Y
F038478Metagenome / Metatranscriptome166Y
F038536Metagenome165Y
F039470Metagenome / Metatranscriptome163Y
F042407Metagenome158Y
F046323Metagenome151Y
F048040Metagenome148Y
F058676Metagenome134Y
F067889Metagenome / Metatranscriptome125Y
F068393Metagenome124N
F073077Metagenome120Y
F076867Metagenome117N
F078219Metagenome116Y
F080804Metagenome114Y
F081868Metagenome114Y
F082080Metagenome / Metatranscriptome113N
F089876Metagenome108Y
F091324Metagenome / Metatranscriptome107Y
F091753Metagenome107Y
F093503Metagenome106Y
F096272Metagenome105Y
F096289Metagenome105Y
F101429Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208325_1002884All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica4352Open in IMG/M
Ga0208325_1009331All Organisms → cellular organisms → Archaea2347Open in IMG/M
Ga0208325_1009789Not Available2288Open in IMG/M
Ga0208325_1010040All Organisms → cellular organisms → Archaea → Euryarchaeota → Candidatus Methanoliparia → Candidatus Methanoliparales → Candidatus Methanollivieraceae → Candidatus Methanolliviera sp. GoM_asphalt2257Open in IMG/M
Ga0208325_1011020Not Available2146Open in IMG/M
Ga0208325_1011237All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes2122Open in IMG/M
Ga0208325_1014430All Organisms → Viruses → Predicted Viral1851Open in IMG/M
Ga0208325_1019336All Organisms → cellular organisms → Archaea1575Open in IMG/M
Ga0208325_1029593Not Available1252Open in IMG/M
Ga0208325_1031452Not Available1210Open in IMG/M
Ga0208325_1034605Not Available1148Open in IMG/M
Ga0208325_1037646Not Available1096Open in IMG/M
Ga0208325_1037883All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1093Open in IMG/M
Ga0208325_1044390All Organisms → cellular organisms → Archaea1003Open in IMG/M
Ga0208325_1049689Not Available944Open in IMG/M
Ga0208325_1056933Not Available877Open in IMG/M
Ga0208325_1057294Not Available874Open in IMG/M
Ga0208325_1059695Not Available855Open in IMG/M
Ga0208325_1060957Not Available846Open in IMG/M
Ga0208325_1064357All Organisms → cellular organisms → Archaea822Open in IMG/M
Ga0208325_1064807Not Available819Open in IMG/M
Ga0208325_1076189Not Available751Open in IMG/M
Ga0208325_1080693All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon728Open in IMG/M
Ga0208325_1084320All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium 4484_255712Open in IMG/M
Ga0208325_1085413All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium707Open in IMG/M
Ga0208325_1089756All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7689Open in IMG/M
Ga0208325_1091523All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus682Open in IMG/M
Ga0208325_1106646All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage630Open in IMG/M
Ga0208325_1107909Not Available626Open in IMG/M
Ga0208325_1108851Not Available623Open in IMG/M
Ga0208325_1111023Not Available616Open in IMG/M
Ga0208325_1111595All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria615Open in IMG/M
Ga0208325_1126207Not Available577Open in IMG/M
Ga0208325_1127382Not Available574Open in IMG/M
Ga0208325_1128777All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium571Open in IMG/M
Ga0208325_1142034All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon543Open in IMG/M
Ga0208325_1142957Not Available541Open in IMG/M
Ga0208325_1153262Not Available522Open in IMG/M
Ga0208325_1153656All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia522Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208325_1002884Ga0208325_10028842F076867MDERNRNLTEIAKKKRYIALVEKLSRSTLTQKEVKELEGFEKANSRPEVDVIAGTVDLPTMSIFLEKSPRMVRRYIDQGMPVIRDSAGEIFRFKVNDVFKWLYGSKAGDDEGKEYWDNEYRKNRAKLSKIELRQKEGEIISFEDHVSIVKNQVRGVKTGFLRLPKHVAPKLYQQEPKVICEILDEEIRFIINQFAGMRHVNKARKRNT
Ga0208325_1009331Ga0208325_10093314F096272LSWMEDLKKLHCKPKVSIAEVNEFILQHPKWAASIIRNALGFGMYREFCLCCENFDKCCEKLGVIKRETSLGCICNEFLNQEHSEVNRPRLRAYFKEVTVMLNL
Ga0208325_1009789Ga0208325_10097892F005111MIAMTTGFDEFDNRIHDLVERENECDDLFKDIKNGNGENSLRYFALRDACKELRKGIFRSAMSAGLTRESIKMEIKEVRSETIATNAKQT
Ga0208325_1010040Ga0208325_10100402F008068MDEIIVAGEPCLVIRSPLIPRTLLCNSLLQPLLSRLKSAEEFVAFVSEPCVAPQGLDVVLVTAFWPRCVFNQASEEVMGKPLQTIKPQHLMLVERELYMKLTKKTCLFGDFIDSLLLHNEDKRKVSELLSKVRSWIRDNKSYGLFFLTEVRGMKDFIDQTAGIFEIVVKAEVETEQDEPLLRFTIMK
Ga0208325_1011020Ga0208325_10110201F029893MSTMQDSISVAANSVSVNVLSGLLFEFTDGGELGVSCCGSATGLRATFIVGVPLCDDIAINLQNRFPILPDDIIFSGEVPPGRMILRFRNTTAGALTAFW
Ga0208325_1011237Ga0208325_10112372F008068MDEIIVAGEPCLIIRSPLIPRTLLCNSLLHPLLSRLKSPEEFVAFVSEPCVAPQGLDVVLVTAFWPRCVFDQASGEAVSNPVQTIKPQHLMLVERELYMKLTKKRCLFGDFLDSLILHNEDRRKVCGLLSKARSWIRENKSYGLFFLTEVRGMEDFVDQTAGIFEIVAKAEVKTEQDEPLLRFTIMKHPSIAEIDKKIEVTFEKGQPKRRRG
Ga0208325_1014430Ga0208325_10144302F039470MAQTQTVTDTGIKELIALWEEAGATGMESIVGLNMATPCTAAVASTFADPADTATHHVGSGLELAAIDAVSHATVNTADDTITFDHVFTATGSINVAGIHVCNNDDDVTFIECCFNAVLAMENTDTLTIDGQSTIDQA
Ga0208325_1019336Ga0208325_10193362F024682MEIETLNAEDELISKLKQEIGKTLPPMFSGMAENMLESNKDVIINWLKENKDLVKEVIES
Ga0208325_1029593Ga0208325_10295931F080804RLWERARGRGRTLNSKPATDAKELALIEKSIIKTMRKFRESPRSFWSTDDIRCHLKLQLLKGRLFKKGSLGNVFLSFPTKSRYEQRGDGSLIPSLTGKNDHFALAGWAASIPTTWNNVTQRLSFAVEIEYFPSVPENWAVRIRNDLLKLSDEKNEVPAKGRFLLLLTTQPTSLFRGQLNTLFEEFPSVRCYQQIAQ
Ga0208325_1031452Ga0208325_10314522F038536VNLQILRRRAEMLDAVCTGLHPSAVISQLAEKYDISEKALWSDWLRREKWVPLLLELEKFADFSGMVVERLNGVQKAAWSIYLKASNDSARVGALRTVLEALEIHRDVIQTMDVLDRLDQLEEVAKERCSTFKRGGGSLH
Ga0208325_1034605Ga0208325_10346053F058676VKEIIIRMELPNLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLVED
Ga0208325_1037646Ga0208325_10376463F081868METETKKVTPVVKGNSYGVSVAIWDNVNKAGTKYQSISLSASTKQADGSYKNRTIFFPSDLENLITALTELKANADEAGIQTGFVEKK
Ga0208325_1037883Ga0208325_10378832F034800VEAQAPIGAEEGIPVISHFVVNAEKLCSRPVGVPTHLDARILGTIFWAALANSVFLVFSMVRIFAAKEVKYGLLDLFRPQFYLANPIFIVLMIIGPVTFVSDLMVFSAAGEVSARTLGLLGLSALNLVGVIFGFVQFVLVNILFRTEQVPGRVYILLGLWFIFVVSGSLIGTLIMGELAK
Ga0208325_1044390Ga0208325_10443902F096272MEDLKKLHCKPKVSIAEVNDFILQHPKWAASIIRNALGFEMYRDFCLCCENFGKCCEKLGVIKRETRLGCICNEFLNQEHSEVNRPRLRAYFKEVTVMLNL
Ga0208325_1049689Ga0208325_10496892F008802KVIMKPARAGNALVDGLAIGPEGERIAIEVKSPRDDVIRGVGQCYEAVCAGYTRALLVTTLRIARKLRKRVFQRRGIRLIGVDAKARIHRYDADGWRLLG
Ga0208325_1056933Ga0208325_10569331F008068LEMDEIIVAGEPCLVIRSPLIPRTLLCNSLLQPLLSRLKGPEEFVAFVSEPCIAPRDLDVVLITAFWPRCVFNQVSEETNRRPVQTIKPQHLMLVERELYMKLTKKSCLFGDFIDSLLLHNEDKRKVSELLSKVRRWIKDNKSYGLFFLTDVRGTEDFIDQTAALFEIVVRAEVETE
Ga0208325_1057294Ga0208325_10572941F082080MCETPGLMTDKEAARLYRLEDIGVSLWGYWGTERTGQPGLTSRLSREIIEHFTCYEQGPFLYRDVGNGSIMLSLPALEIAGFNLVRITESEEGPVLVAIEGNDRETWEYAVWLYRLVRRIYPSRGKGGKPGQISWKIVANWLREEPGLFHQFVELLVERKLKRWEQEQEGIAITDK
Ga0208325_1059695Ga0208325_10596951F101429LLLSLGIGAIIVGAILPAYKSQQTFEASGPHVTFTSERNYWIDFYLIPPIDEGTPIMLSLFSNKPGSTWIFLAPFDLQTESVSGPSVVNEMLGPTDTGLVFFGRATKSSMYSLRITSWNSTYSVRVESRWSRFFQFRYGIVVGAALVPASLFLFYYDGIVEKRDRMFEKALKGIEAGTGKAKVSLHS
Ga0208325_1060957Ga0208325_10609571F021062EKVYFFEPLEKEISVEDMQKIVDANEKLVKGLKYGQSIRK
Ga0208325_1064357Ga0208325_10643571F073077PLNYSWIPFPQKLTVNPLILGRTVILTDERFSDYIENVEKWDNELCWKNTTNCSFDHIAINKSQKPIAATITIGERGKIHFLPKTTKINRSKAIKLLIGLATREEPEEYPWLDSIEIPELNQIENSWNNSIAPEEYRNLFSIDHKKITKAVQIILEDLGIQTLQNTEFDLTGLKGNIVVKIASTKGKVEAQNTRINQLAKFIENQRKNEKIIFVANTYKELPINNRTSKEHIDLSMKLFLETNEAIFLTTLSLYHLWKKVITDQISTQEASFLL
Ga0208325_1064807Ga0208325_10648071F068393FVDLAIRRLVEKNASRIDQMPPEELRKMKMEIENEKPKAIETALKAFDACPDWLWCRSSATGYREDPIDDSGVSEEGAIWKVLQGYSRPLEGIFARYGLGVGVPVVPDATVTGYPLKLPYRFLEDHALKELNIAVGEAHEGFCRAKRDVEVLEREFKENEALEKFESA
Ga0208325_1076189Ga0208325_10761892F042407MKLKNSVTIVSILTLVIIFSAFLASQLGRNMWTSTFLMILFGVVGIAGLAKFRDPIILELGVIGLVADTVWELYGTGNRLWGYYGSPFYMIRGTLPIEVAVLYFFLGMTAAVYV
Ga0208325_1080693Ga0208325_10806931F091324MSVHFHTTIPKKTDDLLEELAKTYGTKSRVLEKAVETLLRVEKVGSCDDCTVRARVAEQTNLREALDLTSIGRRTLDGLVEVGVGDKTVDDLIKEQKREGRNVTQILKGSAAWKSPSNFKEFMLILEEIKNLTRMFDIASYNEIESRAILRPRAFKRLPEILAFQVASILEGIGVPFDLRMMGDDIAIKMIRPELSSLRKREFDELLNEQTERRLASIAPG
Ga0208325_1084320Ga0208325_10843202F093503MKKYKVKIKHTDKEEIIKADSELEARVKFCEQNNLNYTHLAGKLEITLNNKPLLNNL
Ga0208325_1085413Ga0208325_10854132F016922MSTPIRISSRAIQCVADAEGATDYAIRNNGRDFLVTAHSKAEAEHAAEFYRPDEPDAAQPELLP
Ga0208325_1089756Ga0208325_10897561F036460LIMEDIRPTDGWLLNVSTGTLPMGSPTEITQDRFRSVFPNTTKVWNRVNQLGPGCAGNPCDPVLNQIGWGADRLTYYAEQQAWATPLMCYDQDMHVTHAKQHLAQIISEVLKPATINISSNFLRKRALLWAKYRHMANTLLSNFSFQWKLAGAAGDEEQFFETSASPSQLFHLVPQMLQNNYSKTMREGYAGKNPFKDTSPFVELVSDMDTTWFLDKLGGQLGVGGGSL
Ga0208325_1091523Ga0208325_10915231F076867VGGVHRKKSAKRISMDEKNQNLVELAKKKRYIALVEKLGRGSLGPKELKELEEFEKVEQAKETGVIDGTVDLGIISVYLEKSSRMVRRYVSQGMPVIRDSSGELSRFKVNDVFKWVYGNKGKDAEDKDYWENEYRKNRAKLSELELKQKEGELIPFADHVSVVKNQIRGIRAGLLRLPKHVAPKLHQQDPKLICEMLDQEIRYIINQFAGVKGNDKADKRGA
Ga0208325_1106646Ga0208325_11066462F033040MQVQTWVAVAVGVMAILSGLYAAVRFIVRSIMDEIGPKANGKSLKEQVNRLEARLDHIYTILLER
Ga0208325_1107909Ga0208325_11079091F048040ILSNSLSLSSVVGFGFSMISEAEILHIVNEIHQYDVVLMELRDGTVFGVAKGGESTPMYFRTRRAARTADERRMLLETVMGPRDEGHVDAVTLETLLNGLRGMKARHVWLERRTEPRHEMAFLNLKELGVFLRKHEM
Ga0208325_1108851Ga0208325_11088512F032299DQLATEMYGGDAPTHTDIIKSANARAQKRHEMKGQHVADVGVLPDSAEMVHNEMVGVRNNGYLAKKGLEFGVNAFYNSLPPGMDIEDQENSDIRKIEMNVYEGGIGYPGDGWVYRASGSQMPNTKDMGRPGMTNDVPSKKI
Ga0208325_1111023Ga0208325_11110231F096289YSTRGCIVGPRHPARRYGHENGVNDNRRLLPGGLALIFLSDHSRRKALIRLAREEFITPGVMINISEAARRYWKAHPKECAGVALTITTREADRPRTILDDYERPKCRKCGAPMFWKSGCGECKGPVKKNQWTCKECGFKRFTKDTLEKAIAKLERRG
Ga0208325_1111595Ga0208325_11115951F038478SGGVVVKGILRDRSLQEKLQKKRSDFTVQLIGFDFGPNKIQIQATIVKELLGIDEEQATKAFEGLCRSFSEVCCEYHIKFDPIDLFILVDEELQRGTSTKFRDAYDESLFAEVLIPANDFKMHEYWKYSFLHELGHSWFSINFSPEDMECGHEDLFVDLVVICTFRKILPPHKRVYQEVRKHRPYFLTQQSKRFIGKELYKQIL
Ga0208325_1126207Ga0208325_11262074F046323MQQHFEIVYETKGVKVVNVWLSPEQELPEQWKTMTYAEQDEWLYEHQVHSNVKWTDEHKGEAVNVLPVLSLK
Ga0208325_1127382Ga0208325_11273822F078219FGKNLSVWEINFIADLLDNPSERYTEKQIDIITRIYDEKT
Ga0208325_1128777Ga0208325_11287771F089876EMKKSQYREKFDTLAAEIKINLMNTTVSYGTKLYEKSGWGSLVFYNKMANGAYDINVYPQKLTDRDQNRSGVPVSQEPIAFSKIMIATSVLAGKLPDATVIADDKVYGKAMYELWKRNWAMTGGNGGNTLMITYQNLFTYGWAAWRVYPRRVQTKRNGVDKILFDDVYREPLDPTRTWLGIGFNNGDVW
Ga0208325_1142034Ga0208325_11420341F091753MSEIPEEIKKKYPSIGTFNHPKNDKYYVEEVKKLDGIFVEDSNPAREYWKGFELIEWEDGHRELRFCFYTRKRGTESWKWRQFNPIISFD
Ga0208325_1142957Ga0208325_11429571F067889MTDRQVHGATSRGHKEEDVRKLIAAAAILAVVFVIGCQDTQKVAELQGQVDQLTQKITEMESTVVVKLTAERDSLAKLVVDLQAKMPAKGTTPGTKPPTGGGGTV
Ga0208325_1153262Ga0208325_11532621F036057AQYAKNPTEALDDLYDAFRTAESLHVVGEYSEERFASSASAARAALNVLKLNLTPKQTRFTAKICVGPVTGGNDVMSAIMTAMLTAAGCEAVDISRATTAKELLRNAEQSGAELLVVIFNEQTADLVKEFVKEFQSGGFRNKLHAIAFVRGSQPTTDESGTFVFVAREPLELLS
Ga0208325_1153656Ga0208325_11536563F036104MGQDGIPLSIGIIIAAAILGATFIVGMVLLAVLIA

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