Sample 3300025774

Overview

Basic Information
IMG/M Taxon OID	3300025774 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0084162 \| Gp0116224 \| Ga0209586
Sample Name	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-4B (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	63850416
Sequencing Scaffolds	15
Novel Protein Genes	17
Associated Families	16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → unclassified Methanosarcina → Methanosarcina sp. Ant1	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	polar biome → peatland → peat soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: Barrow Environmental Observatory site, Alaska
Coordinates	Lat. (^o)	71.299	Long. (^o)	-156.61	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F016092	Metagenome / Metatranscriptome	250	Y
F016394	Metagenome	247	Y
F017900	Metagenome	238	Y
F023003	Metagenome	212	N
F049598	Metagenome	146	Y
F051905	Metagenome	143	N
F052849	Metagenome	142	Y
F073982	Metagenome / Metatranscriptome	120	N
F078013	Metagenome	117	Y
F080207	Metagenome	115	Y
F085859	Metagenome	111	Y
F096256	Metagenome	105	N
F101090	Metagenome	102	Y
F103182	Metagenome	101	Y
F104110	Metagenome / Metatranscriptome	101	N
F104111	Metagenome	101	Y

Family

Category

Number of Sequences

3D Structure?

F016092

Metagenome / Metatranscriptome

250

F016394

Metagenome

247

F017900

Metagenome

238

F023003

Metagenome

212

F049598

Metagenome

146

F051905

Metagenome

143

F052849

Metagenome

142

F073982

Metagenome / Metatranscriptome

120

F078013

Metagenome

117

F080207

Metagenome

115

F085859

Metagenome

111

F096256

Metagenome

105

F101090

Metagenome

102

F103182

Metagenome

101

F104110

Metagenome / Metatranscriptome

101

F104111

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209586_1000319	Not Available	2515	Open in IMG/M
Ga0209586_1002255	All Organisms → cellular organisms → Archaea	1159	Open in IMG/M
Ga0209586_1002847	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → unclassified Methanosarcina → Methanosarcina sp. Ant1	1062	Open in IMG/M
Ga0209586_1003502	Not Available	987	Open in IMG/M
Ga0209586_1007928	Not Available	742	Open in IMG/M
Ga0209586_1008094	Not Available	736	Open in IMG/M
Ga0209586_1008596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094	720	Open in IMG/M
Ga0209586_1008719	All Organisms → cellular organisms → Bacteria → Proteobacteria	716	Open in IMG/M
Ga0209586_1010354	Not Available	673	Open in IMG/M
Ga0209586_1011247	Not Available	654	Open in IMG/M
Ga0209586_1013705	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	608	Open in IMG/M
Ga0209586_1015951	Not Available	576	Open in IMG/M
Ga0209586_1017200	Not Available	560	Open in IMG/M
Ga0209586_1017577	Not Available	556	Open in IMG/M
Ga0209586_1019973	Not Available	532	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0209586_1000319

Not Available

2515

Open in IMG/M

Ga0209586_1002255

All Organisms → cellular organisms → Archaea

1159

Open in IMG/M

Ga0209586_1002847

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → unclassified Methanosarcina → Methanosarcina sp. Ant1

1062

Open in IMG/M

Ga0209586_1003502

Not Available

987

Open in IMG/M

Ga0209586_1007928

Not Available

742

Open in IMG/M

Ga0209586_1008094

Not Available

736

Open in IMG/M

Ga0209586_1008596

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094

720

Open in IMG/M

Ga0209586_1008719

All Organisms → cellular organisms → Bacteria → Proteobacteria

716

Open in IMG/M

Ga0209586_1010354

Not Available

673

Open in IMG/M

Ga0209586_1011247

Not Available

654

Open in IMG/M

Ga0209586_1013705

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

608

Open in IMG/M

Ga0209586_1015951

Not Available

576

Open in IMG/M

Ga0209586_1017200

Not Available

560

Open in IMG/M

Ga0209586_1017577

Not Available

556

Open in IMG/M

Ga0209586_1019973

Not Available

532

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0209586_1000319	Ga0209586_10003194	F080207	MRKTSIGVVLCLVLIGTLTAITGVTAAPMDDSAIQRFDIAMGDYKYGKLTVDTETDQFVANAHVGKQSADEQVTLVARKDGASPHYVVIARSTVNDGGRVHWGGTLTEAQLDWIHSYGYGAVFFVRGNY
Ga0209586_1002255	Ga0209586_10022552	F085859	MKDGKTGEHKPKEPSFLTGQEALIYEIERACGQLNTLKGLQLNEPLFRAVAAEIRAHMDHLGLSLIELTEPCG
Ga0209586_1002847	Ga0209586_10028474	F051905	LRNDETIISSISVTDIFFDVYLGKWNYRVIPKVKTWSYFLTIPK
Ga0209586_1003502	Ga0209586_10035021	F049598	PTARFLADTTIRACQPKEEFMRRVLIVALIAVAALALCAPAFAWPIALPWWQPAHHFTCVGKIKAVDATANTVTVRVHLASRGVADYLAEDLTISVDPAAKLFRAKGRRLTPIALTDVVVGEKLRVEGVVDCSAGAPVYVGKRLVMRHLPINDIKRFAFRGPVTAVDATTGTLSARLNSVTRVLSPYYHSEFGFAVAPNARVWVMKNGWPVKAALADVVVGDRVYAQGGVDRRHPAAPVFTIRWMLVRHAAAPTTVAP
Ga0209586_1006769	Ga0209586_10067691	F104110	GEVYYLVEKGEDPNIRYYFTQEDVLTSNDRVVTRSVGEFTDDTAKRSHFLCALYGVEVRDTTNKRVGVLDNFVAGPEGALVVIEDAKGNALVGRYRDLDLTRLSKFATLKQLPAQDSFDQYLKGMNKDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID
Ga0209586_1007928	Ga0209586_10079282	F052849	KKLLKTLVADAVAVEPVSTPKFPANREINREFCRIHPLCEIFNADTRVISKAFGRIPYATEQRIISAEQGFLTQEQGISLAKAKIFAG
Ga0209586_1008094	Ga0209586_10080942	F051905	LRNDETIISSISVTDIVFDVYLGKWNYRVIPKVKTWSYFLTIP
Ga0209586_1008596	Ga0209586_10085962	F101090	YAAVSGIIAGGSAIAGGLYAHSAQPLFGYAQFYGIHSKYLSGVHVLVGIGVIMVVGGLISFKWPSVGAVIVCLGAIVGLIFTYNRGQYHWTPLVYYWWAPWLFAWIAGIFAGLSMSQRVQQLGAQKDGSVEPS
Ga0209586_1008719	Ga0209586_10087192	F104111	LPTTLPHRRRADEKLSPARIVFDFLFNAILVTSALILTFIVLVREEQYAFGQLQSPAQVIQQGPLDTTGESLVIPPSN
Ga0209586_1010354	Ga0209586_10103542	F078013	MTQGTERDDCNIDNIDEYHAMRDEALTNVKAPPPSEYDIAQFEEAFADNDGEYDYDGSERNAKQRALIWYSDTLYSASELSFIMPKVVPHYKQFDGVKTIQRLTGMYPEAYFLPSREYGVAIFVYPPNGTTALKKPNKIEMERLKADSYTIHVILREDKLIHVIELWFDA
Ga0209586_1011247	Ga0209586_10112471	F096256	VWGEAVHMTSRKLQAVLAAAIVATVLTSGCLSSLTSRSSPTATPQNLSVSYDASFVLSGWHAISKFTQVTPKTYVGTYADEKGQSWNFTVQLFSAENTSYGRYFELMKKKSDEGYVKTNESKIGLGTGQTVFGRIDEKWYGYKASDSENPALYALLFGYDENA
Ga0209586_1013705	Ga0209586_10137051	F103182	KEVTKDYMEMTKEEVFKDYGSVFSSVKSTPRIKTRRPSKKLKQCSKCGRVGDEMTKHSLTGEHKPPFIWLCRQPCHDEVHKFGIKMTKEEKAALKRQPPCSIQFPKENNIANPYSKLIEPESLDGEKFKQSFKRIDYENKET
Ga0209586_1015951	Ga0209586_10159511	F016092	IMSYSQERSAAMTFAKKLKKTRLRGDRLTFTRTKSIDPITSARVEFALSTLAASGKLKGSRTERLSARVDPGLIKAARTKTGLKNDSELVNAALAVLAAPDDFGPWFAAQAGRLPKDFELEL
Ga0209586_1017200	Ga0209586_10172002	F017900	MIRRYPSQHRRGDARWPDPVPPVVRAHVRARDRVCVFTRLGIPHECFGRLELDHVRASGGLGLRSRSTPDNLALLCPVAHRLKTLHGREWRPVLLAWIEIAERGDD
Ga0209586_1017577	Ga0209586_10175771	F016394	TTSTIRRKERMQNEELSCLAKKVRTFLPNVESFPIATIYNVIKEQEKTKLNLSDFKELIYHLTGWDISFQVIRRQLEINQIVW
Ga0209586_1019973	Ga0209586_10199731	F023003	MAKNQTHRVDAEDIVDDVPDRADMGALADTLVDRGRAVLDQFPAVADGARDVLAGAQDQVNGLSDMGIVAASGFALGVSSGLLLAGAPRAILILSMIPVALTLRSAFARGMRPARLI
Ga0209586_1022289	Ga0209586_10222893	F073982	AALTTVAFDQSGPRWLGISDLIAEPEGPTFISYKVARSRLDRLRFVTQNP

Scaffold ID

Protein ID

Family

Sequence

Ga0209586_1000319

Ga0209586_10003194

F080207

MRKTSIGVVLCLVLIGTLTAITGVTAAPMDDSAIQRFDIAMGDYKYGKLTVDTETDQFVANAHVGKQSADEQVTLVARKDGASPHYVVIARSTVNDGGRVHWGGTLTEAQLDWIHSYGYGAVFFVRGNY

Ga0209586_1002255

Ga0209586_10022552

F085859

MKDGKTGEHKPKEPSFLTGQEALIYEIERACGQLNTLKGLQLNEPLFRAVAAEIRAHMDHLGLSLIELTEPCG

Ga0209586_1002847

Ga0209586_10028474

F051905

LRNDETIISSISVTDIFFDVYLGKWNYRVIPKVKTWSYFLTIPK

Ga0209586_1003502

Ga0209586_10035021

F049598

PTARFLADTTIRACQPKEEFMRRVLIVALIAVAALALCAPAFAWPIALPWWQPAHHFTCVGKIKAVDATANTVTVRVHLASRGVADYLAEDLTISVDPAAKLFRAKGRRLTPIALTDVVVGEKLRVEGVVDCSAGAPVYVGKRLVMRHLPINDIKRFAFRGPVTAVDATTGTLSARLNSVTRVLSPYYHSEFGFAVAPNARVWVMKNGWPVKAALADVVVGDRVYAQGGVDRRHPAAPVFTIRWMLVRHAAAPTTVAP

Ga0209586_1006769

Ga0209586_10067691

F104110

GEVYYLVEKGEDPNIRYYFTQEDVLTSNDRVVTRSVGEFTDDTAKRSHFLCALYGVEVRDTTNKRVGVLDNFVAGPEGALVVIEDAKGNALVGRYRDLDLTRLSKFATLKQLPAQDSFDQYLKGMNKDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID

Ga0209586_1007928

Ga0209586_10079282

F052849

KKLLKTLVADAVAVEPVSTPKFPANREINREFCRIHPLCEIFNADTRVISKAFGRIPYATEQRIISAEQGFLTQEQGISLAKAKIFAG

Ga0209586_1008094

Ga0209586_10080942

F051905

LRNDETIISSISVTDIVFDVYLGKWNYRVIPKVKTWSYFLTIP

Ga0209586_1008596

Ga0209586_10085962

F101090

YAAVSGIIAGGSAIAGGLYAHSAQPLFGYAQFYGIHSKYLSGVHVLVGIGVIMVVGGLISFKWPSVGAVIVCLGAIVGLIFTYNRGQYHWTPLVYYWWAPWLFAWIAGIFAGLSMSQRVQQLGAQKDGSVEPS

Ga0209586_1008719

Ga0209586_10087192

F104111

LPTTLPHRRRADEKLSPARIVFDFLFNAILVTSALILTFIVLVREEQYAFGQLQSPAQVIQQGPLDTTGESLVIPPSN

Ga0209586_1010354

Ga0209586_10103542

F078013

MTQGTERDDCNIDNIDEYHAMRDEALTNVKAPPPSEYDIAQFEEAFADNDGEYDYDGSERNAKQRALIWYSDTLYSASELSFIMPKVVPHYKQFDGVKTIQRLTGMYPEAYFLPSREYGVAIFVYPPNGTTALKKPNKIEMERLKADSYTIHVILREDKLIHVIELWFDA

Ga0209586_1011247

Ga0209586_10112471

F096256

VWGEAVHMTSRKLQAVLAAAIVATVLTSGCLSSLTSRSSPTATPQNLSVSYDASFVLSGWHAISKFTQVTPKTYVGTYADEKGQSWNFTVQLFSAENTSYGRYFELMKKKSDEGYVKTNESKIGLGTGQTVFGRIDEKWYGYKASDSENPALYALLFGYDENA

Ga0209586_1013705

Ga0209586_10137051

F103182

KEVTKDYMEMTKEEVFKDYGSVFSSVKSTPRIKTRRPSKKLKQCSKCGRVGDEMTKHSLTGEHKPPFIWLCRQPCHDEVHKFGIKMTKEEKAALKRQPPCSIQFPKENNIANPYSKLIEPESLDGEKFKQSFKRIDYENKET

Ga0209586_1015951

Ga0209586_10159511

F016092

IMSYSQERSAAMTFAKKLKKTRLRGDRLTFTRTKSIDPITSARVEFALSTLAASGKLKGSRTERLSARVDPGLIKAARTKTGLKNDSELVNAALAVLAAPDDFGPWFAAQAGRLPKDFELEL

Ga0209586_1017200

Ga0209586_10172002

F017900

MIRRYPSQHRRGDARWPDPVPPVVRAHVRARDRVCVFTRLGIPHECFGRLELDHVRASGGLGLRSRSTPDNLALLCPVAHRLKTLHGREWRPVLLAWIEIAERGDD

Ga0209586_1017577

Ga0209586_10175771

F016394

TTSTIRRKERMQNEELSCLAKKVRTFLPNVESFPIATIYNVIKEQEKTKLNLSDFKELIYHLTGWDISFQVIRRQLEINQIVW

Ga0209586_1019973

Ga0209586_10199731

F023003

MAKNQTHRVDAEDIVDDVPDRADMGALADTLVDRGRAVLDQFPAVADGARDVLAGAQDQVNGLSDMGIVAASGFALGVSSGLLLAGAPRAILILSMIPVALTLRSAFARGMRPARLI

Ga0209586_1022289

Ga0209586_10222893

F073982

AALTTVAFDQSGPRWLGISDLIAEPEGPTFISYKVARSRLDRLRFVTQNP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025774: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-4B (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences