3300025766: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-three (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025766
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0084162 | Gp0116221 | Ga0209280
• Sample Name: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-three (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 42210641
• Sequencing Scaffolds: 24
• Novel Protein Genes: 25
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar biome → peatland → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Barrow Environmental Observatory site, Alaska
• Coordinates
  • Lat. (^o): 71.299
  • Long. (^o): -156.61
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000573	Metagenome / Metatranscriptome	1016	Y
F003707	Metagenome / Metatranscriptome	473	Y
F005316	Metagenome / Metatranscriptome	405	Y
F007547	Metagenome / Metatranscriptome	349	Y
F008969	Metagenome / Metatranscriptome	325	Y
F011333	Metagenome / Metatranscriptome	292	Y
F012664	Metagenome / Metatranscriptome	278	Y
F017214	Metagenome / Metatranscriptome	242	Y
F017250	Metagenome / Metatranscriptome	242	Y
F018536	Metagenome	234	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209280_1000784	Not Available	1449
Ga0209280_1001076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	1322
Ga0209280_1001714	All Organisms → cellular organisms → Bacteria	1148
Ga0209280_1002843	All Organisms → cellular organisms → Bacteria → Proteobacteria	961
Ga0209280_1003486	Not Available	895
Ga0209280_1005555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	749
Ga0209280_1006347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	713
Ga0209280_1006692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	700
Ga0209280_1007095	Not Available	685
Ga0209280_1007605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	668

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209280_1000784	Ga0209280_10007842	F033171	MAKWTLEEHLTFDIAFALKTVTIPGFRKALTEEHRVGIAKTILDHLKLCRWQFSKPSEPV
Ga0209280_1001076	Ga0209280_10010763	F031958	MAKHVVLERLNKLVAKGYVVRWEESEQDTVRLQHPRAPDLTLFSDGRIWVLTVSPDDWIAAENEADQRRFQPFVSPNDWIAAENEADERRLKSFLRRIPKPTTLQSLKAMTVEDVWIRVTVWTVVI
Ga0209280_1001714	Ga0209280_10017141	F007547	VTKDRLTYWEGNPMQQPLPPQLELPEGDRFALPTVSAVRELVPPGGQLPAHMVLMMICGKELWVPLDREIARQMANILAPFRE
Ga0209280_1002843	Ga0209280_10028431	F003707	MAWLRRLIVSVGVGGVSYALMLVIMVLSVVYDREFEPVITFAFDTGRGIIDTLDRLVAGSYWGQVAVNHLRERVNMTHVVLSLPAIIIAVIFVGIPLNWILGGTRTALQRITI
Ga0209280_1003486	Ga0209280_10034861	F029932	MTLYRRKLETVEAFHYEAALETMDFKYPFPDWLQNMVTVKENAILQLDTDSGLVWVKPGQWVVKDRRDNLHILDPEEFHRSYEAVSE
Ga0209280_1005555	Ga0209280_10055551	F005316	MPTIYISDSGDDKNDGLSLQTPIYSFKRAKELHGSRNDCSWHFGPRAWKRIQKEL
Ga0209280_1006347	Ga0209280_10063471	F017250	SQVPGTLSAMDPSVPSTTPTAEKPALSDAERAERLKLLAERLRNPDGLDREALAQVEQLSSHEQ
Ga0209280_1006692	Ga0209280_10066921	F000573	RRIIVSVGVGGASYGLMLGIMVLSVVYDREFEPVITFAFDTGRAIIKILDGLVSGSYWGQVAVNHLRERVNMTHVVLSLPAILISVVLVGIPLNWLLGGTRTAQRIAIAIISVPATVVLAVALFTFNALVPETYAALLRFADWIWQETLNALSASGDTIPGARKLTNVARQGFSGHHFVIMALCSMVAAFLVNGVFALGTKTRRPARV
Ga0209280_1007095	Ga0209280_10070951	F067703	MVQIETKSIILTAATIVTILTLTLPSLDLNGFTQTPQILDVQSNSNIDKREIKDNTQSELAVKVQLVPHENEFLEDYYQVSDFAFMLSNSSQLCPTGTCEYELEDGTMQAERVLGERSLSGRITIDTGESKKMMELRASWNTIEELDKNGKNVKVIKGVLDLGISQFSPENKYQINGTLT
Ga0209280_1007605	Ga0209280_10076051	F054221	VGVKVRSIPVAIALLMLILTTSSTVALFVKTSSASKMAQGEVRCEGAGAVVINIAGDDYAVNGMARRHYPPIQRVWNAATHPESDIDRIIVSGLTLCNWGSTSASALALNAASRN
Ga0209280_1008429	Ga0209280_10084292	F008969	IADSNMADPRDVTQREAYIIAQALYEFIRAEQSKPSDLRRWSDEQHAIAILHARFDNELATLVQSDEAAGREPPDCARTASIGG
Ga0209280_1009218	Ga0209280_10092182	F099824	PVMGLAGPGEELSGEPHHGISVIQGEIPTAGAAWVVERLPERATRESARAVWLEAMSRPGLLAPTGTRR
Ga0209280_1009905	Ga0209280_10099051	F058115	RTEPTLERFRTVTRIGYAIPILHPLIELDGDMYADGGFLWNVPFEYAEEWGATDIYILSVVPSRLPRAESLRFVPQVAARMYDVFWRTLGNSSYLEKTLDEGTYHGINVTVFEPSPETGMFDPLGMLNAHPGKSKGLLWQGYRDAERVLRGAKPRSGRVKGKVPPRRAPKATPRPRRGARDRARGR
Ga0209280_1010596	Ga0209280_10105961	F063124	MTGKRKSAGNVGRAGRSEPDLGQKEAELETTQAELERASKAQLSHMKGGKAAKAARQPKAKIRSK
Ga0209280_1010830	Ga0209280_10108301	F044469	MSTSINWTELVRDRKGVRTKDNKSCGNIIGNDEKNIIIEDGAMRQHIYKVPKSSIESYNGAELRLNISYDELKTDEVKDDDKGMLESITESVKDKTKSLKKHID
Ga0209280_1011382	Ga0209280_10113821	F042544	MNRRFPAPWSAEQIPGGFKVVDTAGQSLAYVYARETKAQADAAKV
Ga0209280_1012057	Ga0209280_10120571	F067703	YRTFTVLTSIAAMTILTLILPSLNLNIFSQSEIKDNTQPELAAKIKLVPHENEFLDNYYQVSNFTFVLSNTSQLCPSGNCEYELEGGTMQAERIPDERSLAGRLTIDTGESKKVRELRASWTTVEEIEKNGGNVKVIKGMLELGISQFRPDNEYQINGTLSSEGNGYLLEVKGIR
Ga0209280_1012610	Ga0209280_10126101	F018536	IYVEGKYMRNSVIAIQSIVITTILHALLVPVFFEMDNNAFGEKGANFVDDDDDKTMMMDNQQLLETTECKSPCPSSAEMCIAMCA
Ga0209280_1012879	Ga0209280_10128791	F012664	VFHNYDDNKFKKIIDDFILSSTNDTSLSSAIRNIDFEAAKLGISFYQMIFILIQKDKSNRKKKPLNKYL
Ga0209280_1013430	Ga0209280_10134301	F020164	FATGRGFDARLVGDNAGGLTVEPIKEEDAQDEEESARSAFVPWTAVRYIQLLEEPSERQKARPKRTAAKKPEEPAP
Ga0209280_1013652	Ga0209280_10136521	F105099	VLGSGRVDGVTAQAVPADALPGHPAEWAVDDVRGRGFATRWTSGSSGDPKAACASATPAPATASSLALTFRQPTNVREIGIEAGLPADDPQLAARWRPQTLELRWSNGACQAVQLAKGPELQRFAVDQDTVTGVTVVVVAGYPPDTQGSDRLDIGEVTFWQR
Ga0209280_1013717	Ga0209280_10137171	F011333	MLDTRESFPPSAVPDIVPNTESRDLTELLLGVLRSIEPYEACILEAERDGDFEVAAFLRELRRQDLVRAREATRLLKRSLRAAYVDVGKRGESYVELSIGS
Ga0209280_1014228	Ga0209280_10142281	F029235	MAENMSNKSNDYKRDAQNDEIKSIVLGLFALIGFLILIYSIFMGVVGEPLASVADTVFVAAIIGSFTLVGIIV
Ga0209280_1014675	Ga0209280_10146751	F017214	MGSRNPPPNLYGPALLAAVERAFDATWTELQARDPFRDFDKDNELKTELSHELSALAADGVTDAIELREWALEGLSGYR
Ga0209280_1014776	Ga0209280_10147761	F038404	HFKNIYLLNYDLITIMKFQYISSYKILMMPIMIIMIISTTSNSNLSYSQSNGDSLIFEDPLSGVQFQYTADEWVKEGSSLFGAEAECSSLPCMKLPEISVSVYPIATEDFSLENYTQEQSFFHNLSEGYKPIALNETTIGEEKKAFQYVYSIKSPLLMEEASNEIMNYEIYT