3300025743: Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_8d (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300025743
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133460 | Gp0294610 | Ga0256321
• Sample Name: Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_8d (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 39471523
• Sequencing Scaffolds: 32
• Novel Protein Genes: 40
• Associated Families: 29

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	25
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	2
All Organisms → cellular organisms → Eukaryota	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → river water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000191	Metagenome / Metatranscriptome	1666	Y
F007472	Metagenome / Metatranscriptome	350	N
F016245	Metagenome / Metatranscriptome	248	N
F023532	Metagenome / Metatranscriptome	209	N
F023855	Metagenome / Metatranscriptome	208	Y
F025928	Metagenome / Metatranscriptome	199	N
F029333	Metagenome / Metatranscriptome	188	Y
F032191	Metagenome / Metatranscriptome	180	N
F033039	Metagenome / Metatranscriptome	178	Y
F036098	Metagenome / Metatranscriptome	170	N
F037068	Metagenome / Metatranscriptome	168	N
F041009	Metagenome / Metatranscriptome	160	Y
F042749	Metagenome / Metatranscriptome	157	N
F044315	Metagenome / Metatranscriptome	154	N
F054052	Metagenome / Metatranscriptome	140	N
F059974	Metagenome / Metatranscriptome	133	Y
F060577	Metagenome / Metatranscriptome	132	Y
F063363	Metagenome / Metatranscriptome	129	N
F063389	Metagenome / Metatranscriptome	129	N
F067678	Metagenome / Metatranscriptome	125	N
F071251	Metagenome / Metatranscriptome	122	Y
F071977	Metagenome / Metatranscriptome	121	Y
F076857	Metagenome / Metatranscriptome	117	N
F079635	Metagenome / Metatranscriptome	115	N
F082151	Metagenome / Metatranscriptome	113	Y
F082153	Metagenome / Metatranscriptome	113	Y
F086577	Metagenome / Metatranscriptome	110	Y
F091630	Metagenome / Metatranscriptome	107	Y
F102558	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256321_102420	Not Available	1708
Ga0256321_102863	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1578
Ga0256321_103266	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1487
Ga0256321_107721	Not Available	962
Ga0256321_107928	Not Available	949
Ga0256321_108361	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	923
Ga0256321_109122	Not Available	884
Ga0256321_109738	Not Available	854
Ga0256321_110145	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	832
Ga0256321_110269	Not Available	827
Ga0256321_110339	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	825
Ga0256321_111027	Not Available	796
Ga0256321_111870	Not Available	765
Ga0256321_112239	All Organisms → cellular organisms → Eukaryota	752
Ga0256321_112243	Not Available	752
Ga0256321_113178	Not Available	722
Ga0256321_113433	Not Available	714
Ga0256321_114142	Not Available	694
Ga0256321_115536	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440	659
Ga0256321_115770	Not Available	654
Ga0256321_116639	Not Available	634
Ga0256321_117434	Not Available	618
Ga0256321_118444	Not Available	601
Ga0256321_119003	Not Available	591
Ga0256321_119671	Not Available	579
Ga0256321_121260	Not Available	557
Ga0256321_123800	Not Available	525
Ga0256321_123826	Not Available	525
Ga0256321_123861	Not Available	525
Ga0256321_124125	Not Available	522
Ga0256321_124350	Not Available	519
Ga0256321_124403	Not Available	519

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256321_102420	Ga0256321_1024202	F063389	MQIGWLQIVVIVLLVLILFGKLPNIIQDLKSAYLELSKKNEQKDK
Ga0256321_102863	Ga0256321_1028631	F063363	DRHERNRSNPDGLMRMNLISMHSASITLGKDLQGQSIYLRWFLQEHPLERQCLLNMYPASRRWLVRMLLSTRWISLLETEINVAAALTGINSQDRSNTLKSISDAYLRRPIPSGFPRWVLRILNADPLLLGK
Ga0256321_103266	Ga0256321_1032662	F076857	MSEIREKLSELEKGLESLNAAPVGREIATEQFDAADALVTQRELRKKFAKMNTAEISEMLDIQASRETGKQASNDVLNRLAVANPNIAKLLDSSGGTALIRQDLEPMLYSLFVKRFPFFERIRKEPANGLVHAFNQQTAYGDAVFQTETGTVTDDSATYSRQTTNVAVLATRRGITLKNQFALGQGGSPFNGLSTELAGGVTAIAGKLQKTLFQGNADTTASAGTATELGAYDANGFTGLRKLLGSGSSAEIVTKATSESYLSNINEVVAGILDNGGNPSAILLSPTDYANFVNELTSLVRFNAPSQQGQVAGATFASVATANGVLPLLAVPGDSIGSYTLSSVNYRDMYVVDEDTWSMPYLGTDSITTLEIPIGVNG
Ga0256321_107721	Ga0256321_1077211	F079635	KSACLQIREDIINQSQVMNFLAGARPADNLSECIHMANQLATADVLKVICEWLAKHIEFAQRDEAPAVRRAFDQSFFLLNAAGHAALAAAANDQAKADILDSRKDWLRWRQDDPENEDAKRPSHGGARTPAFQRTGPVEERLHRTYEEIQHIMFVANFLELHPTDWHKTFAIQENERLASQPPGPFQEYGLDPADKFAETVMELCCHHLGDMILGCESPVDMQHRFPTLIGAKALTAKDRYDIVVADLWIHGDEHLKSIVPELQAQQREEFAQAQAAGMSQADIDQKFGKPIADWTVESTQEERAFMKEVPNQEDNPQLI
Ga0256321_107928	Ga0256321_1079281	F007472	IQFGKMVYFTYKKLNICTVALLATVFAVLIAAMAVDWYQFKVEYSYTRISSTDSSLSSSLYNYTQTNFDMYGQTVQTQAANTKIVRTTQNTYAQLGASNVNQQFKIQQAFVLIALLVAGLLFVAHTLYFFDAFRNKILFFVGITALRTLLIIALLVVIASEVIAFLAFLGLSDKIASDNANCLSGPCQKFSDAVTTQLGQQNIPIGTETSVAVTLQYITRWGPTAGWFLVLATIPLTVLATIIVVINRFPIPVDSLGTGEAL
Ga0256321_108361	Ga0256321_1083611	F042749	HRAPVWYQLSLASPIFAASHSPVTTMIGSTWMKVLAVPCLLLVATVAVMYLEPSEPSIQSAGEVALESTQRTQSLALFKHAAIEDVYVYAGKEEHTRHLVPFICRLIKRHRFRLNIHQFFSVEDAPLRSVLWSHDSRVVIFPPFESYPEISSKGFTDLRAYVAAGNNVVFMGSYIALQVMNDAFGFSLRDDYKEGPYYRNDRNVRGTEFEYLPSRLNEPSPRVYGAMAKSLPPGGFSLYDSLGSVVVFYVRYDLGTVVYIGYQFDNPYQIDSWVRVIHAAMAM
Ga0256321_109122	Ga0256321_1091221	F023855	IVIRLYNRVIQYDGNLKTERYGEVRVVSLSSFIKFYQEFSTEGVQKYGSRDVTESSLVSSRSKDGLAG
Ga0256321_109738	Ga0256321_1097381	F036098	LEQSGKENEGLLLASLMKLQEEVDGRIGAVKGEVDVQGKSMIEVLETLAAERKAADDERKQVQTRLEGVRSDVEAVQAQSAKQAETVSGLLVKVADFEGVKPAVQADMEQLKRQMAEEAQGVAGRVESLQAALDQSGKDNEGLLLASLMKLQEEVDGRIGAVKGEVDVQGKGMIEVLETLAAERKAA
Ga0256321_110145	Ga0256321_1101453	F033039	YYFMLPNNGSLNSGINSCESRYKEAVDCALLSVKQLILTLEFMSMEPNSAFIMDRINFYDEVTSELYGIKNGYSKLSWNELIEVFKK
Ga0256321_110269	Ga0256321_1102691	F044315	ASVMPHQQIDVAGLDGSESFRVRGASRSRSLLLVGSMLALAVCGVLMYVGMGSSQPVDLLQRSCPNCLAKISAKINALSSDQKHMAQQFESELNRLQRSVALLKSEVAHVNPRSGLVVIKKALSAAAPANHDSEFDESGFKKGANRARNMRDKKYGAFANRAIDKDTVEAFADHIYGPNPTTLDRKGVEREGYFTMAKIHSGNFYYINLEGVSNHHIKLIMQGTDGYNREFEGYGSIYTGPLYDGDHGVRDYFEVQDLVSGDVEFFRFSHPWTPP
Ga0256321_110339	Ga0256321_1103391	F042749	SARSLFTLSSFAASLGPLSKMAGSTWMKIAAVPCVLLVAMVAVMYFSPSETSTEPDTKVALVESAQQFQSLALFKHAAIEDVYVYSGKEEHTRHLVPFICRLIKRHRFRLNIHQFFSVDDAPLRSVLWSHDSRVVIFPPFESYPEISSKGFTDMRAYVAAGNNLVFMGSYIALQVMNDAFGFSLRDDYKEGPYYRNDRNVRGTEFEYLPSRLNEPSPRVYGAMAKSLPPGAFSLYDSLGSVVVFYVRYDLGTIVYIGYQFDNPYQIDSWVRVIH
Ga0256321_111027	Ga0256321_1110271	F007472	WYQYKVEFSYTRVTASDSSLASSLYNYTETTFDMYGQTVNTQGANTKIVRTVQQTYAQLGASNVNEQFKIQQAFVLIALLTAGLLFVAHTLYFFDGFRNKILFFVGITALRTILVIALLVVVASEIIAFLAFLGLSDKIASDSPNCLSGPCQKFSDSVTTQLGQSTLVIGTEASVAVALQQIASWGPTAGWYLVLATIPLTVLATIIVVINRFPIPVDSLGTGEAL
Ga0256321_111858	Ga0256321_1118581	F000191	TVGNLVNQHVRFIETGEKDPLMTYEKALITQSRGWEIPEFD
Ga0256321_111870	Ga0256321_1118701	F086577	VTEMAAPANGSSFARLKTLGATVIATQSWTVIGDVRVVSFAFSVLMETDAAGNRKFSGSVQGSISIGRFTFGAYVPFNKPGSQMEFVLPEVTVNGVNVNELFGVGTTVSVGADDVENLLAGAGAEVTARVKAELAQKAAELKALAKEQLRANLLAPLQELQARAELMRQQAQNGSVLLLGNVVDALRIDGFDSKVLNPGVAGLPDFGSFGLTDLVTEMAAPANGSSFARLKTLGATVIATQSWTVIGDVRVVSF
Ga0256321_112239	Ga0256321_1122393	F054052	MAVAKVAVLLALLGVAAAIYPDDHWSYSTKLSSANAETEIKKAVDSGKTMFVRFIASEG
Ga0256321_112243	Ga0256321_1122431	F007472	IQLGKMVYFTYKKLNICTVALLATVFAVLIAAMAVDWYSYKIEFSYTRVAASDTSLASTLYNYTQTTFDMFGQTVNVQVANTKIVRTSQQTYAQLGASGVNEQFKIQQAFVLIALLTAGLLFVAHTLYFFDGFRNKILFFIGITALRTILIIALLVVVVAETIAFLAFLGISDKIAKDSPNCLNGPCQKFADTVTTQLGLSDLAISGGNVAVSLQQVATWGPTAGWYLVLATIPLTVLATIIVVINRFPI
Ga0256321_112949	Ga0256321_1129491	F025928	MSLLNGKKGKDLGFSDFVSSAVRGLFMPYFSLPIILLGVGVGYATDLVLKPLLVTGFTQAGSIGAIVGPIATAAGISIITGIFIAVYGQVYGILATSAKTGTPTIGEAFALIGQRGLSVFAAGLLVTLATVGIFIVGLVVVIGGAVAANAGGVTTGLFILFLVVYLYLTMRLGQAGWFAADGMGAIDSIKASWNRTQGHLLKILFWSLGGAFVFAAVGALIGLLTRSLPDGIGSSIGT
Ga0256321_113178	Ga0256321_1131782	F032191	ELRQDNHPRASGPGGEQKLNRFPRRVRIHGGEFGESARAIHRIG
Ga0256321_113433	Ga0256321_1134333	F059974	MSKTSNNQKLAVLKIWLEEQKTKGRIKKKNPVWLNQILNED
Ga0256321_113433	Ga0256321_1134334	F091630	MKIDGGALEFFQTIPDDMLTQIALHDRDSLERLCVALTLDVQLIIEE
Ga0256321_113929	Ga0256321_1139291	F082151	FFLLNSKDVPLSLPRENSCNLDNNLQISQIAVFDPFGTNVALNKPCDAINLFTTDKLIPYLPTGPENVYPLQQTTCERAVDGNLVNRNGNEIFQSNDPDSDSVTFDLGQDVFIKRIMYWNRKDCCQSMMAGATLEIIAANGNVVNSEVLNDKLVQSFDFPSSQSRATLFTECNYHGEQVAIGPGNYKLALLQIPKSSLSAIKLPNDLEIKLFEGESFDGKSTPWIQADVPCL
Ga0256321_114142	Ga0256321_1141421	F082153	PMVRPVTVTVTAVLAAIDWVAMVMTIWVPVGVATVPVGGPLPLICTPGVPVLEKKLDGYVSVMVPPVASAPPAVVVNENVAAADALPATRSDAAIPNEALVT
Ga0256321_114142	Ga0256321_1141422	F029333	MTIWVLVGVATVPVGGPVPLICTPGVPVLEKKPVGYVSVMVLPVASAPPALVVNDTVAAAGVLPATRSDAAISNE
Ga0256321_115536	Ga0256321_1155361	F067678	MATNYYADDEEDDDTTTDVVGQLRKVNRSLEKRAKELEQELSGLKPQTRQRTVKDALQAKGLNPKIAALIPHDIEPSDEALLKWVEEYGDVFGIQTSTEEKPAEKSPEVKAQARINNIVATGSAPDIDEDAFAKIAGAKTREDLDALLGFN
Ga0256321_115770	Ga0256321_1157701	F071977	VEKAGQAIKSEVSKHVDNIGNIGKSIAGGLDKALGTDIFSKGQQFVHQHVGGGITSFVNQAVDGFSGVMNGAMKAVNDRIQSVLDPNRAQREYMNSQEYKDKMAAKNIFETFSKKLELPSNMPKYLSDSIVQWIMGEMKVTPLGKQPFLTNLNAENQCVPESAPNTCNEGDIKCIVLANKCFLDDEECVRAALKKVPTAALEQYAATHHLDFPGSSYG
Ga0256321_116639	Ga0256321_1166391	F041009	KLQALTFDADPQSAIIMESPEEAGRSRIPDFEASGIYIQPTFDMAFDFYLPRVGQFQQISALQFQCERAKSTAKDFWMPWFEFIFTSGDKFAQGEKSTNRLAVTKSLPLSSEEYMIRIELSSNKDKGYTITAIKTNKKLYNFKCGATSIALDVPPRSKDLIIGFAGNVQSGADGTYFTNLQALHLKLNAFADEVAETFRHGVRLLLASCR
Ga0256321_117434	Ga0256321_1174341	F016245	PLDISNDVIVPAFVFDLGDHQPRIELQDRVMKATTTMTVTFTPSDTITENGRFVMTLVGAGFACSANTAVTFVSPAGGSGSVSISAGLVLTLQLSGGAFSAGGLVQFWFGGVTNPAMNQSQVHDLAAVTTTSSGEVIGGSVTGQLPAIVNGLGNLSVGLSNTVRQGTGIRMTVSFTPVDAFPSDGRFIITLVGAGFACSANTAVT
Ga0256321_118444	Ga0256321_1184442	F029333	VLVGVATEPVGPPPLIDTPGVPVLAKKPAGYVSVMLLPVASAPPAVVVNENVAAADALPATRSDAAIANEAFVT
Ga0256321_118864	Ga0256321_1188641	F000191	SGYTVGNLVNQHVRFIEPGEKDPLMTYEKAFFTQSRALEIPELD
Ga0256321_119003	Ga0256321_1190032	F071251	NKAFSTHVEEDINHDGFHMTFDNGATISVMFGKHTYCDQGETTAEVAVWNQNGDWYVLNEDDNHNSLIKYPDGTEVIGHCTSNMVAHIMNLAKNL
Ga0256321_119480	Ga0256321_1194802	F060577	MHLDFDVLNVGPAGRLSVAYTSNLDANVQSSSDRISSGTLQTAVTNSGSGYSIGYSVTPGPVKIALGLTKIDQQHRVDAQDATSKTLGLTYTGSEFAIGAQRTKNDGTAAALATGANINDTIDTVAGSFKANKEITLGLSY
Ga0256321_119671	Ga0256321_1196711	F023855	VIQYDGNLKTERYGEVRVVSLSSFIKLYQEFSTEGVQKYGSRDVTESSLVSSSSKDGLAG
Ga0256321_120858	Ga0256321_1208581	F102558	RSQAVEAVTSSGLEGLEQRTLVAAALLLFEDGAGVAAGMSDRREGSHGSAAVGSAIVSEDDLQCCQNALSIFGDQSIEEVFTDDAEDFTVNVACVARAVQEAAVFSQLRPKLLKPFQGADKMYEVVLVLKRLYEGQGSRSQAVEAVTSSGLEGLEQRTLVAAALLLFEEGGGSISTACDAVRSTHVA
Ga0256321_121260	Ga0256321_1212601	F063389	MQIGWLQIVVIGLLVLVLFGKLPNIIQDLKSAYLELSKKD
Ga0256321_123800	Ga0256321_1238001	F023532	LLANETEADDKAPANMAGTDTLATVSTGAKPGVAPYVDIVEVVAAAAALGIVRAEMTHTMTPFKAVAVPRASFTLGEEYVAVIVPDEMAVPPLLHVAVGLLPPKEVKPDIVITAASVDDVPVNPTVMVEEAETRLLANETEADDKAPANMAGTDTLATVSTGAKPGVAPYVDIV
Ga0256321_123826	Ga0256321_1238261	F016245	FACTAGTAVTFVSPAGGSGTVSISAGLVLTLQLSGGTFNAGSAVEFWFGGVTNPTSTQPQTNNIHAVTTTSAGVVIGGSVTGILPAIVGGLGTLRVDLSNTVRQGTGIRVTVSFTPVDAVPGDGRLVVTLVGAGFACTAGTAVTFVSPAGGSGTVSISAGLVLTLQLSGGTFNA
Ga0256321_123861	Ga0256321_1238611	F016245	PVDAVPSDGRLVVTLVGAGFACGANTAVTFVSPAGASGSVSISAELVLTLQLSGGVFSAGGAVQFWFGGVTNPSSDQAQVSDLAAVTTSSTGVVVGGSVTGVLPAIVKGLGTLSVGLSNTVRQGTGIRMTVSFTPVDAVPSDGRLVVTLVGAGFACGANTAVTFVSPAGASGSV
Ga0256321_124125	Ga0256321_1241251	F023532	TTAAFKATGLARTSFTLGEVYVTVIIPEMAVPALVHSAEGLLLVKEVKPVKVITSADVDDAPVNPRVMVEEVEMRSLENATEVEVKAPANMAGTATPATVSTGANPELTPNVDMVEVVAAAAALGVVRPETTHTTAAFKATGLARTSFTLGEVYVTVIIPEMAVPALVHSAEG
Ga0256321_124350	Ga0256321_1243502	F029333	MTICVPVGVATEPVGPLPLICTLGDPALAKKPDGYVSVMLLPAASAPPAVVVKVNVAAAEVLLATRSAKATP
Ga0256321_124403	Ga0256321_1244031	F037068	EGVKPAVQADMERLQKQMSEEAQGLAGRVETLQAAVEQSGKESEGLLLASLMKLQEEVDGKIGAVKGEVDVQGKSMLEVLETLSAERKAADDDRKQVQTRLQGVSSDVEAVQAQSAKQAETVSGLLLKVADFEGVKPAVQADMERLQKQMSEEAQGLAGRVETLQAAVEQSGK