3300025717: Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - MD2A

Overview

Basic Information

• IMG/M Taxon OID: 3300025717
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0054089 | Ga0207419
• Sample Name: Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - MD2A
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 512009680
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Biddulphiales → Biddulphiaceae → Biddulphia → Biddulphia tridens	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Elkhorn Slough, Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.83
  • Long. (^o): -121.785
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001506	Metagenome / Metatranscriptome	681	Y
F011397	Metagenome / Metatranscriptome	291	Y
F015419	Metagenome / Metatranscriptome	255	Y
F034932	Metagenome / Metatranscriptome	173	Y
F036294	Metagenome / Metatranscriptome	170	Y
F062769	Metagenome / Metatranscriptome	130	Y
F082762	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207419_1027338	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2157
Ga0207419_1045289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	1550
Ga0207419_1097158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	928
Ga0207419_1114321	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Biddulphiales → Biddulphiaceae → Biddulphia → Biddulphia tridens	832
Ga0207419_1137098	Not Available	734
Ga0207419_1157290	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	668
Ga0207419_1182497	Not Available	604

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207419_1027338	Ga0207419_10273382	F036294	MDRGSSDEAIVGVKPTADDDAVTYRRGKLLESDKEVGAEGRNM
Ga0207419_1045289	Ga0207419_10452892	F062769	MTDLDAFSNWLTSATRAAILAVRARVYLAREQHPAWRSATNTILKRITQELAARGEYDRRCVA
Ga0207419_1097158	Ga0207419_10971582	F034932	MRTVRIESESHNLIAGFVAGIEWVNDSAVAVVDLQYCGRTAFVVLEDRDGSGEDAVLRLTSDGLADEE
Ga0207419_1114321	Ga0207419_11143212	F001506	MNRILYEIRCKCKENISITKKRKSTSRTEGKRLVYPKSNELTSKSFQIEYEKKLSSVAKCLLNSFQHKYFYYAVDDILYLCKSNAKERENLLAILYSPVILLQNNLFINFFDIWIQEIYITEVLKSNKFLKTTDSNVESFHSITIKLLYRTKTPVKQQESLW
Ga0207419_1137098	Ga0207419_11370984	F011397	FDRICDGYVYICDNTSVEERKEWRINLKDLQKTIKKGEKYIYQVAKDSGMFKAMCLSFNNYRIIRKHIFGIDDE
Ga0207419_1157290	Ga0207419_11572901	F015419	MKYELKITDEQGNEHLYNVVRSSSDEPKNLNDFILEALSISEYKRQLPFLTQCPNGLEVHPSIKMKFKDYGSSLVGDKLEAMMVTWRCLVLK
Ga0207419_1182497	Ga0207419_11824971	F082762	MLGLFTESLTYLFPGGRTLKLIKNGVSVTNSSNPVVLAKNITLTVVDCCAPPPLRLAAHCIAAGATIAASIAAPNPVTLGSAVHLVTELYENC