Sample 3300025525

Overview

Basic Information
IMG/M Taxon OID	3300025525 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053062 \| Gp0055519 \| Ga0208244
Sample Name	Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_5A (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	144067389
Sequencing Scaffolds	15
Novel Protein Genes	15
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → Ignavibacteriaceae → Ignavibacterium → Ignavibacterium album	1
Not Available	2
All Organisms → cellular organisms → Bacteria	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulforegula → Desulforegula conservatrix	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Serpentinite Rock And Fluid → Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → planetary subsurface zone → rock
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	USA: California, McLaughlin Reserve
Coordinates	Lat. (^o)	38.8739528	Long. (^o)	-122.4391613	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F018837	Metagenome / Metatranscriptome	233	Y
F025775	Metagenome	200	Y
F040940	Metagenome	161	Y
F045540	Metagenome	152	Y
F048134	Metagenome / Metatranscriptome	148	Y
F048673	Metagenome / Metatranscriptome	148	Y
F050470	Metagenome / Metatranscriptome	145	Y
F077452	Metagenome	117	Y
F079717	Metagenome	115	Y
F084897	Metagenome / Metatranscriptome	112	Y
F089856	Metagenome	108	Y
F098192	Metagenome	104	Y

Family

Category

Number of Sequences

3D Structure?

F018837

Metagenome / Metatranscriptome

233

F025775

Metagenome

200

F040940

Metagenome

161

F045540

Metagenome

152

F048134

Metagenome / Metatranscriptome

148

F048673

Metagenome / Metatranscriptome

148

F050470

Metagenome / Metatranscriptome

145

F077452

Metagenome

117

F079717

Metagenome

115

F084897

Metagenome / Metatranscriptome

112

F089856

Metagenome

108

F098192

Metagenome

104

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208244_100001	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → Ignavibacteriaceae → Ignavibacterium → Ignavibacterium album	1093042	Open in IMG/M
Ga0208244_100153	Not Available	86916	Open in IMG/M
Ga0208244_100179	All Organisms → cellular organisms → Bacteria	80319	Open in IMG/M
Ga0208244_100301	All Organisms → cellular organisms → Bacteria	54810	Open in IMG/M
Ga0208244_100399	All Organisms → cellular organisms → Bacteria	45491	Open in IMG/M
Ga0208244_101370	All Organisms → cellular organisms → Bacteria	13515	Open in IMG/M
Ga0208244_101691	All Organisms → cellular organisms → Bacteria	10572	Open in IMG/M
Ga0208244_102391	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulforegula → Desulforegula conservatrix	7238	Open in IMG/M
Ga0208244_103969	All Organisms → cellular organisms → Bacteria	4279	Open in IMG/M
Ga0208244_105096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	3312	Open in IMG/M
Ga0208244_106344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2668	Open in IMG/M
Ga0208244_110038	All Organisms → cellular organisms → Bacteria	1649	Open in IMG/M
Ga0208244_114172	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
Ga0208244_116031	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1060	Open in IMG/M
Ga0208244_117601	Not Available	981	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0208244_100001

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → Ignavibacteriaceae → Ignavibacterium → Ignavibacterium album

1093042

Open in IMG/M

Ga0208244_100153

Not Available

86916

Open in IMG/M

Ga0208244_100179

All Organisms → cellular organisms → Bacteria

80319

Open in IMG/M

Ga0208244_100301

All Organisms → cellular organisms → Bacteria

54810

Open in IMG/M

Ga0208244_100399

All Organisms → cellular organisms → Bacteria

45491

Open in IMG/M

Ga0208244_101370

All Organisms → cellular organisms → Bacteria

13515

Open in IMG/M

Ga0208244_101691

All Organisms → cellular organisms → Bacteria

10572

Open in IMG/M

Ga0208244_102391

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulforegula → Desulforegula conservatrix

7238

Open in IMG/M

Ga0208244_103969

All Organisms → cellular organisms → Bacteria

4279

Open in IMG/M

Ga0208244_105096

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans

3312

Open in IMG/M

Ga0208244_106344

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

2668

Open in IMG/M

Ga0208244_110038

All Organisms → cellular organisms → Bacteria

1649

Open in IMG/M

Ga0208244_114172

All Organisms → cellular organisms → Bacteria

1178

Open in IMG/M

Ga0208244_116031

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

1060

Open in IMG/M

Ga0208244_117601

Not Available

981

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0208244_100001	Ga0208244_100001520	F045540	MSVISMGGNDMSKYIFTLATLLDSKSKIKKHYSPDTVIADLFDENLDEIDFIKSLPELELIYGFEIPADLYDKTDLTLREFADELSQLTIITEELYPEFFDIKFTSLKLTKRWIELENKTDEDSLREMQIINEKFAELDDRLNVVLGNVLIN
Ga0208244_100153	Ga0208244_10015330	F025775	MKQLFTFQGFPMVVVTAMIIWAWISVLSVLIASFF
Ga0208244_100179	Ga0208244_10017960	F077452	MISITNLNRIKKSVETHLKSGDLELVILPRVEYNALLEKLDDLKDIHDSVEALIEYRSGKRISFDRYDRRRKAKRVQDRPS
Ga0208244_100301	Ga0208244_10030129	F025775	MKQLFTFQGFPMVVVVAMIVWSWISVISVLIASFF
Ga0208244_100399	Ga0208244_10039920	F089856	MRNTALFALPVLAALLLSGCASLGNRTPATGPIPCTYRFKMLTRAEDQARVEAAINAVAVGPVTKSGTVTFPEYRFRVKRLADLDALHPKLLFAKPATAFTPNRQQTVNLKSAGVDVTFDSTDVSASATTTISFNIKPGSRLYYKHPGGVESDITAKVDKNGKVTFPTTIKEGQKHIHARAVKDNVIRYIRVNIFTNEVTDIRKSDY
Ga0208244_101370	Ga0208244_1013708	F084897	MAKSDAFVETSKSRFEVADASEVSLGVGGTFRAEQIGTLGVDSGGSN
Ga0208244_101691	Ga0208244_1016919	F098192	MKCPLRINSEGNALDCYKDECAWWVADAEIEGSKTKGTCAVLEVAVNGIFVTIGDDEEVDFYA
Ga0208244_102391	Ga0208244_1023914	F040940	MGTLNNIFNLVFGINLILVGVVAFISGIVSLAKRNESVRKLTSITYIIAGVAAVYFGVVLTSSAYNM
Ga0208244_103969	Ga0208244_1039691	F079717	MPRGKMVYVSERAHRRLRLLAAQHNRPMGKIVEDLVADEFAEMANPWTGPEGLWLQQQALAEAWDDPALDVHGEA
Ga0208244_105096	Ga0208244_1050962	F025775	MKQLLTFQSFPMVVVTAMIVWAWISILSVLIGSFF
Ga0208244_106344	Ga0208244_1063442	F048673	MRTFAMLLILVAIAASQPHHWLAVLMAAIARCIGR
Ga0208244_110038	Ga0208244_1100384	F079717	MPRGKIVYVSEGAHRRLRLLAAQHNRPMGKIVEDLVADELAEMANPWTGPEGLWLQQQALAEAWDDPALDVYGEA
Ga0208244_114172	Ga0208244_1141722	F018837	MTTIFDDLHKRYGAASAEQKLVVLRRELLRPIITVETSAHLLQTVGDQICNCLPDEISPEEFKNTITWLNEAARDLHQVLDALTADVSQVQGQHGIK
Ga0208244_116031	Ga0208244_1160312	F048134	MNKEKKIQLNLAIPERHRNLLRRMAAERTMENPSQVFSASGIATEMLLSSLNDIGKFNIKKEDEK
Ga0208244_117601	Ga0208244_1176013	F050470	VGLAARGARNLTGKVEKIEDQDALAQVRRQARRVVFKAFLAAIPLTLIAFALPQLW

Scaffold ID

Protein ID

Family

Sequence

Ga0208244_100001

Ga0208244_100001520

F045540

MSVISMGGNDMSKYIFTLATLLDSKSKIKKHYSPDTVIADLFDENLDEIDFIKSLPELELIYGFEIPADLYDKTDLTLREFADELSQLTIITEELYPEFFDIKFTSLKLTKRWIELENKTDEDSLREMQIINEKFAELDDRLNVVLGNVLIN

Ga0208244_100153

Ga0208244_10015330

F025775

MKQLFTFQGFPMVVVTAMIIWAWISVLSVLIASFF

Ga0208244_100179

Ga0208244_10017960

F077452

MISITNLNRIKKSVETHLKSGDLELVILPRVEYNALLEKLDDLKDIHDSVEALIEYRSGKRISFDRYDRRRKAKRVQDRPS

Ga0208244_100301

Ga0208244_10030129

F025775

MKQLFTFQGFPMVVVVAMIVWSWISVISVLIASFF

Ga0208244_100399

Ga0208244_10039920

F089856

MRNTALFALPVLAALLLSGCASLGNRTPATGPIPCTYRFKMLTRAEDQARVEAAINAVAVGPVTKSGTVTFPEYRFRVKRLADLDALHPKLLFAKPATAFTPNRQQTVNLKSAGVDVTFDSTDVSASATTTISFNIKPGSRLYYKHPGGVESDITAKVDKNGKVTFPTTIKEGQKHIHARAVKDNVIRYIRVNIFTNEVTDIRKSDY

Ga0208244_101370

Ga0208244_1013708

F084897

MAKSDAFVETSKSRFEVADASEVSLGVGGTFRAEQIGTLGVDSGGSN

Ga0208244_101691

Ga0208244_1016919

F098192

MKCPLRINSEGNALDCYKDECAWWVADAEIEGSKTKGTCAVLEVAVNGIFVTIGDDEEVDFYA

Ga0208244_102391

Ga0208244_1023914

F040940

MGTLNNIFNLVFGINLILVGVVAFISGIVSLAKRNESVRKLTSITYIIAGVAAVYFGVVLTSSAYNM

Ga0208244_103969

Ga0208244_1039691

F079717

MPRGKMVYVSERAHRRLRLLAAQHNRPMGKIVEDLVADEFAEMANPWTGPEGLWLQQQALAEAWDDPALDVHGEA

Ga0208244_105096

Ga0208244_1050962

F025775

MKQLLTFQSFPMVVVTAMIVWAWISILSVLIGSFF

Ga0208244_106344

Ga0208244_1063442

F048673

MRTFAMLLILVAIAASQPHHWLAVLMAAIARCIGR

Ga0208244_110038

Ga0208244_1100384

F079717

MPRGKIVYVSEGAHRRLRLLAAQHNRPMGKIVEDLVADELAEMANPWTGPEGLWLQQQALAEAWDDPALDVYGEA

Ga0208244_114172

Ga0208244_1141722

F018837

MTTIFDDLHKRYGAASAEQKLVVLRRELLRPIITVETSAHLLQTVGDQICNCLPDEISPEEFKNTITWLNEAARDLHQVLDALTADVSQVQGQHGIK

Ga0208244_116031

Ga0208244_1160312

F048134

MNKEKKIQLNLAIPERHRNLLRRMAAERTMENPSQVFSASGIATEMLLSSLNDIGKFNIKKEDEK

Ga0208244_117601

Ga0208244_1176013

F050470

VGLAARGARNLTGKVEKIEDQDALAQVRRQARRVVFKAFLAAIPLTLIAFALPQLW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025525: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_5A (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences