3300025515: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11Jul_8B1 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025515
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053062 | Gp0055493 | Ga0208733
• Sample Name: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11Jul_8B1 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 70693268
• Sequencing Scaffolds: 3
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Serpentinite Rock And Fluid → Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → rock
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: California, McLaughlin Reserve
• Coordinates
  • Lat. (^o): 38.8739528
  • Long. (^o): -122.4391613
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009579	Metagenome / Metatranscriptome	316	Y
F026449	Metagenome / Metatranscriptome	198	Y
F055311	Metagenome / Metatranscriptome	139	Y
F090615	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208733_100103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	44310
Ga0208733_116337	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	755
Ga0208733_125742	Not Available	520

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208733_100103	Ga0208733_1001031	F090615	PAQKPTPAASGTLTLTRSEKLAQMRALQLAAPEPTDPALIAALRVRKGWLRPDSSIVDKAAVEGLKKLGVLLCPPPDADKRSATVKQINEVATEYLKAVPQARLLIEEAASELQAFWDPDKVYVERTDADIHEKMVTAIKMANADRLRAAEAKAAAGS
Ga0208733_108320	Ga0208733_1083201	F026449	HQTLKGRCSRYSIPKSKMISRRQGGGDEAYCTYVEEADDAANKDSELI
Ga0208733_111189	Ga0208733_1111892	F026449	LFLKNDRLVFHQTPNSISKSKMISRRQGGGDEAYCTYVEEADDDANKDSALI
Ga0208733_116337	Ga0208733_1163372	F055311	MAEDLLDYWVRLIKTIFPANAWINSRFLNNDHLIQIDWKLRNDSENQIRRSKKIEIIIKAGAIEDYLDKDKKDRELSDLMLKEFICRRYDHYISDEDIHANQYASTERWLISKDVITCKPSS
Ga0208733_125742	Ga0208733_1257422	F009579	MSGVELLLAFLAGVVLGIALDRWLLPPLVDAWIDRLRRRGR