3300025514: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11Aug_CSWold (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025514
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053062 | Gp0055495 | Ga0208490
• Sample Name: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11Aug_CSWold (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 99093335
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26207	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Serpentinite Rock And Fluid → Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → rock
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: California, McLaughlin Reserve
• Coordinates
  • Lat. (^o): 38.8739528
  • Long. (^o): -122.4391613
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001230	Metagenome / Metatranscriptome	741	Y
F050234	Metagenome / Metatranscriptome	145	Y
F059781	Metagenome	133	Y
F067546	Metagenome	125	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208490_100067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	91085
Ga0208490_100787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	15630
Ga0208490_101903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26207	6804
Ga0208490_103832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3734
Ga0208490_104201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3475

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208490_100067	Ga0208490_10006787	F001230	MAETAAEAVRNAHRWFEHNSGWAPPDEETLEEWAADGVCRCPDECLVAPDAWCEHGLASWALILAELDRHP
Ga0208490_100787	Ga0208490_1007875	F067546	VTSLASRSAPLTVRTESGAVVLELGDTLDERTGGVLVDAVASAVATTPERVDIDLTALTGWTAQGATSLVQCREMCRGLPDGLHYRTGRGAGREALLAAYR
Ga0208490_101903	Ga0208490_1019034	F050234	VIPPWPLLVLMLEFPVLMALLDCWQRPEDHFAEGAADRRAWLRWLLVAVVTIPVLVGYGIVLGYYYAVVRRSSPASPR
Ga0208490_103832	Ga0208490_1038323	F059781	VHPGQRLRIVTETARAVLDGRLDAEAGAATLALQQGQIADRLRSDRIDVTQAEADEVALTLRRLAEQVSDRTTGPGEVEHRAAIARILGELAQSLR
Ga0208490_104201	Ga0208490_1042012	F001230	VSGAPVDADEAVRNAHRWFEHNSGWAPPDDETLAEWVADGVCRCPDECLVGPRDWCEHGLASWWLILRALEQT