Sample 3300025376

Basic Information
IMG/M Taxon OID	3300025376 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110170 \| Gp0088255 \| Ga0208494
Sample Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA10M (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300025376 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0110170 | Gp0088255 | Ga0208494

Sample Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA10M (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	92037190
Sequencing Scaffolds	32
Novel Protein Genes	34
Associated Families	30

Dataset Contents

Total Genome Size

92037190

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → Syntrophus gentianae	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria → Candidatus Nomurabacteria bacterium	2
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
Not Available	9
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → Syntrophus gentianae

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria → Candidatus Nomurabacteria bacterium

All Organisms → cellular organisms → Archaea

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → freshwater lake → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F001991	Metagenome / Metatranscriptome	607	Y
F002824	Metagenome	527	Y
F009401	Metagenome / Metatranscriptome	318	Y
F012318	Metagenome / Metatranscriptome	281	Y
F017644	Metagenome / Metatranscriptome	239	Y
F019989	Metagenome / Metatranscriptome	226	Y
F021045	Metagenome / Metatranscriptome	220	Y
F023511	Metagenome	209	Y
F024029	Metagenome	207	Y
F025283	Metagenome / Metatranscriptome	202	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208494_1000070	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	36888	Open in IMG/M
Ga0208494_1000138	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	21912	Open in IMG/M
Ga0208494_1000498	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8185	Open in IMG/M
Ga0208494_1000628	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7098	Open in IMG/M
Ga0208494_1000876	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5571	Open in IMG/M
Ga0208494_1000883	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → Syntrophus gentianae	5543	Open in IMG/M
Ga0208494_1003142	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2442	Open in IMG/M
Ga0208494_1003977	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria → Candidatus Nomurabacteria bacterium	2069	Open in IMG/M
Ga0208494_1005718	All Organisms → cellular organisms → Archaea	1630	Open in IMG/M
Ga0208494_1005753	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1624	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0208494_1000070

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae

36888

Open in IMG/M

Ga0208494_1000138

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae

21912

Open in IMG/M

Ga0208494_1000498

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

8185

Open in IMG/M

Ga0208494_1000628

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

7098

Open in IMG/M

Ga0208494_1000876

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

5571

5543

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

2442

2069

All Organisms → cellular organisms → Archaea

1630

Open in IMG/M

Ga0208494_1005753

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

1624

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208494_1000070	Ga0208494_100007047	F074841	MKSMSAKTKKEVLKDLEMYFGRPPYDSEHVRQHLTSGLFEQQALMKYGFTPIELMIGLEQVRLSKKQKVEALKDLKMYFGAPPVSRKALDQRLTSGLLEAQILAKYLMTVEELMKEVGYKVSK
Ga0208494_1000138	Ga0208494_10001385	F085861	MSISQEASKNFGNLCCGPWTHQRNPARKMKIGILLVIIGLIWLGARLGLLDFSWLQAVHFWPTVFILLGVWMVYKGFRQGKPRTIDDKKEDV
Ga0208494_1000498	Ga0208494_10004987	F058557	MAIARFENVDVNTLTFAVDSYGSGNTIITKKFTSRPLVSSVKNSVAILEKYRVYSDLIQFKFNYTPWLRDVIFNQNLYSFTWNGQDWRVTDAIEANDRMSVTVMCYRSDPATKV
Ga0208494_1000628	Ga0208494_10006283	F001991	MAIFNKNTLTQVSGFDNPIIAGELVYNQKTFWNLTMQASDGTPISLVGATIDASIIRRQLSNIQDTRYGLTFDIADYTVSTPTAISLTISNRVDANGTFTLTIDESAWSVLTSDTQLDISATSPVGFSGRIKISFPASGTTPAQDSIIFLLFLVRSDGVTN
Ga0208494_1000876	Ga0208494_10008764	F085861	MSINQAASKNFGNLCCRAWTHQGNPARKKKIGIMLVTIGLIWLGARMGLLDFSWLQAVYFWPAVLIFLGAWMVYKGSMRGISRTSDNKTKEV
Ga0208494_1000883	Ga0208494_10008837	F055311	MAEDLLDYWVRLIKTIFPANAWINSHFSNNDHLIQIDWKLQNDSENPTKRSKKIEIIIKEGAIEDYLDKNKKDRELSDIMLKEFICERYNHFISGNDIHANQYASTEKWLISRDVLNCKPSLDTPPRDQVKSVYQ
Ga0208494_1003142	Ga0208494_10031426	F024029	MNEHIWTASGTDIEERWIKQYGWVRPSEQPEYQAKYKYYQELPLRKLDDVAKNEYEIALRKAKVVRIK
Ga0208494_1003977	Ga0208494_10039772	F002824	MTKLTATALKPGNGKPTTEDLAGLAVVKTVLSPESTKTEEKKSLIKIEPEKPVIPTPEPKKEMTLIEKILKVENLQLVVEKRAKLVQTRSELERFQVSSNDFNCTMRLNDSDGNVFTTSFTPGIKKVIDFLKTSFDASIADVENKITF
Ga0208494_1005718	Ga0208494_10057184	F040697	VIAMQFTKKFVDDEIMDDILKEAADGYGDLIAAALVHNVSVKSLQTRVVELRDLRATWIS
Ga0208494_1005753	Ga0208494_10057532	F088111	SEADTTLTTLWSFIDANKFDFYACGHSHLYARRTIDGSLAPYPQPAHPVPAWQNNVVQLLNGTCGAGSGGGIIDPTVRSEWNVHNDHKTYYFSVVDISGSTVTVNSYKGYTGAYSVFDTFKITK
Ga0208494_1007173	Ga0208494_10071733	F053985	MTFKLQIDTPTTYIKLHIAGKAIHEAALLAYYCEGKRQAVFHEDVEREIDALLTTLGVDARAIASAIDEATEALQYQVENLRAALRCIEDLPPREIEEAWGVATRALRDNDEFAALPLK
Ga0208494_1007186	Ga0208494_10071862	F025283	MLDKQNIIVESLESPPANKGLEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNISVS
Ga0208494_1008694	Ga0208494_10086942	F074841	MKNLSAKMKGQAIKDIEMYFGRPPYESEHVRHHLTSGLFEEQSLMKYGLTPIELMKELQVIKLSKKAKQGALKDLKMYFGEPPVKRKTVRKRVSSGLLEMQILAKYLMTVDELMREVGFEVIK
Ga0208494_1010929	Ga0208494_10109292	F032299	MYETPQVIADQMSTEMYGGDAPTHADIIKSANARAQKRHEVKGQHVADVGVLPDSAEMIHNEMVGARNSGYLVKKGLEFGVNAFYNTLPPGMDIEDQENSDIRKMDLYAYEGGLGYPGDGWVYRASGSMMPKTKDMGRPSMTNAVSGKKI
Ga0208494_1011888	Ga0208494_10118882	F023511	NDDFLSERRIFYNDERFFENEKVFFYRNSFSAYDTFRFTGKSDINLEYERSIGATVREEKDTFFNAPSKQFSAKETENCKANSGWISLSEKNCLRELLLSTEAYEQIGKELFQIIVKSTKVTPFLKGGEYLYNLEIEYERSYQNAFFSVHIPESSANTILLPEPLTWDNMEVSFDDMEITFDQIEF
Ga0208494_1015201	Ga0208494_10152011	F049375	LMLSILIADQPLDLSDDFSVSLNLKSPIFNDVGDYSFPFKVPSTARNMSILGWKNRLSSTRSIYETFDGSIRWNGIVLFVGQVKIKTASDKTFEGTLYINKGNFNYEVKDLLLDRIDMGMKTFPTDQDAVNYFNWSLTHFYPEVDFSLPEIANLDFFDPVATNPELMAYNHIFPDGWLHKTTTDGQSRTILIPFLYLKFVLNKLAENFGYRLQDEFFTSSIELSRLVIYHSVNLSEVIFGLQQIYYCRFLPKVKVSEFISGLEKWFNCCFHVDSKQRVVRIVSNKE
Ga0208494_1015943	Ga0208494_10159431	F002824	MTKLTATALKPGNGKPTTEDLAGLAVVKTVISPESNKPEEKKALLKIEPEKPVIPTPEPKREMTLIEKILKVENLQLVVEKRAKLVQTRSELERFQVSSNDFNCTMRLNDSDGNVFTTSFTPGIKKVIDFLKTSFDASIADVENKITF
Ga0208494_1016256	Ga0208494_10162561	F055311	MAEDLLDYWVRLIKTIFPANAWINSRFSNNDYLIQIDWKLQNDSENSTKRSRKIEIIIKEGVINDYLDKNKKDRDLSDIILKEFFCERYNHSISDNDIDTNQYASTKTWLISKDVINCKPPFNTPLRDQVRPVYQ
Ga0208494_1017062	Ga0208494_10170621	F053838	TLMRWNFWSFGMPPVTEYSGASAKTTGRAFFLLGVKRDLPTSPAGDMGLLVHLSH
Ga0208494_1017947	Ga0208494_10179472	F055825	LNLEIIEHHQQWVLEAFRRGEFDQIEVIGEADEKEFFELCFKEKLLAALA
Ga0208494_1017994	Ga0208494_10179941	F025903	MIDITEEPNLISFAGNPVIYEACSDNYLISLGTPAHFELVVSSIDSTVGHSFHLQFAGKTLIFQSAGFTGFDGLLFEVAYIGQTFNDFANNIYQCFLSNYDIQKYFNVTLDPPGTSQRSIKLQAKESGADGSVVLSNVGVSGVAAGIN
Ga0208494_1019417	Ga0208494_10194171	F103134	MYGRVIDGGKQMSKGLSKGINDKLAGFEEENERRATIATAVKNAFTVRHLSDQTTNNSNNGKFQTIK
Ga0208494_1019717	Ga0208494_10197171	F019989	MNTTQNNIAAPSVTIAPRNPARGVLTFVVTLTTFKDTRSYPCRSMESAIKLVERFIAGVTKHARPSTPEAETNPHQYDGPPRTAEQVAA
Ga0208494_1019814	Ga0208494_10198142	F064732	MESMPKVSELKWKDMEAATGAALAAARERCTMPPALSAERHVKFPSSPMAPGRCTA
Ga0208494_1021878	Ga0208494_10218781	F039529	DGPKVRNAGGSLAAANKPVAKAKTSPDNKAEELQKKAQAGDKNAARDLLATMLASNKRRT
Ga0208494_1024160	Ga0208494_10241601	F017644	MASGLPAATGDVLTASTVNGLVAFTINADATTDYTAVLTDAYQVLQPMNKATAIAFKIPTNASVA
Ga0208494_1026094	Ga0208494_10260942	F074573	NTSILFLNPDVVQWGSLRELGPNNEVFSNADASLDQYIMEGTLIVRNPAGVAVLAGMTTGTVVTTARASTQVQRYIA
Ga0208494_1030076	Ga0208494_10300762	F012318	MAYNSAFAPFGPTYLVGSLAAVQVKSSNNVYPSGYRFVNITSSLIRVSWQPQEPNDATSTPVVTAPALTVPSANTIAIPANGVAVLSGIPPNAWFLSSAASSVEITPGEGLN
Ga0208494_1030910	Ga0208494_10309101	F073009	MLSILIADQSLDLSDDFSVSLNLKSPIFNDVGDYSFPFKVPSTPRNMSILGWKNRLASKRSIYETYEGSIRWNGMVLYTGQIKIKTANDKSFEGTLYINKGNFNYEIKDLLLNRVDLGMKSFPSDQDAVNYFNWSLTHFYPEVDFSVPEIGNLDFFDPQATNPELMAYNHIFPDGLL
Ga0208494_1032374	Ga0208494_10323742	F021045	IMAGSTVQRSAGQTVALSVTSTAHSAVLIDDSTNDQINYTSFLNLGASPIAIKMGTTDPGAPVFPTDGTNGDFVLPPVMTSPMVIASPSTPYYLTAKSSSGTAGLLYVTPTADQS
Ga0208494_1032635	Ga0208494_10326351	F100246	SGVGQGVNTPGTDDIYTDYFSILCLIRDTLNNPIGEDLKPCDFIGCARFDISDYLRSKFAAWEITRFEFPELAGNVKVHGWDYLLKYRVSFAESIAGNVRGLQSDGWKYALAGGLNHELLTSLNEKYLEYFSIPANKSKFLSWLPTTKYSRSGVMEKLFFLFQDNPTGVQYRLVVVIT
Ga0208494_1034288	Ga0208494_10342881	F009401	MAKLRVTTIDNMTSDYEITPLLEYSFEQYAKMGFHKALLQEQKQSDIYWLCWEAMRRSGVTVKPFGEGFLETLKSVEVLESDPLE
Ga0208494_1034840	Ga0208494_10348401	F034443	PNGPTLTDKFFYKWGDDKNKYETIFSSLSDKYIVVSCGNLGTDKDKITPRLFFVGIVGGWGTPVRLKGLANNGNLSLRYPGPNGLFNLYWKDWVNWIMDDRKSVKIEKQMDFIELKNLDFTKRYRINGINYLVSEIAVTLNKSSIKSAQLKCFTAP
Ga0208494_1035597	Ga0208494_10355972	F036227	MPILLYREIKTTMKNSQLLKRSSVYSAIYQQMLGYQHAYLGGYVFKQDVRKKRPSEDSTLWNDLVKNTVAQPICRYIVDTINDVLFEPGVKRNVQFCQPNGTYIDSKNTEWSDLF

Showing 1 to 34 of 34 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025376: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA10M (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences