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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025376 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0110170 | Gp0088255 | Ga0208494 |
| Sample Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA10M (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 92037190 |
| Sequencing Scaffolds | 32 |
| Novel Protein Genes | 34 |
| Associated Families | 30 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae | 2 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 9 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → Syntrophus gentianae | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria → Candidatus Nomurabacteria bacterium | 2 |
| All Organisms → cellular organisms → Archaea | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
| Not Available | 9 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → freshwater lake → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Crystal Bog, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001991 | Metagenome / Metatranscriptome | 607 | Y |
| F002824 | Metagenome | 527 | Y |
| F009401 | Metagenome / Metatranscriptome | 318 | Y |
| F012318 | Metagenome / Metatranscriptome | 281 | Y |
| F017644 | Metagenome / Metatranscriptome | 239 | Y |
| F019989 | Metagenome / Metatranscriptome | 226 | Y |
| F021045 | Metagenome / Metatranscriptome | 220 | Y |
| F023511 | Metagenome | 209 | Y |
| F024029 | Metagenome | 207 | Y |
| F025283 | Metagenome / Metatranscriptome | 202 | Y |
| F025903 | Metagenome | 199 | Y |
| F032299 | Metagenome / Metatranscriptome | 180 | Y |
| F034443 | Metagenome | 174 | Y |
| F036227 | Metagenome | 170 | Y |
| F039529 | Metagenome / Metatranscriptome | 163 | Y |
| F040697 | Metagenome / Metatranscriptome | 161 | Y |
| F049375 | Metagenome | 146 | Y |
| F053838 | Metagenome / Metatranscriptome | 140 | Y |
| F053985 | Metagenome | 140 | Y |
| F055311 | Metagenome / Metatranscriptome | 139 | Y |
| F055825 | Metagenome / Metatranscriptome | 138 | Y |
| F058557 | Metagenome / Metatranscriptome | 135 | Y |
| F064732 | Metagenome / Metatranscriptome | 128 | Y |
| F073009 | Metagenome | 120 | Y |
| F074573 | Metagenome / Metatranscriptome | 119 | Y |
| F074841 | Metagenome / Metatranscriptome | 119 | Y |
| F085861 | Metagenome / Metatranscriptome | 111 | Y |
| F088111 | Metagenome / Metatranscriptome | 109 | Y |
| F100246 | Metagenome | 102 | Y |
| F103134 | Metagenome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208494_1000070 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae | 36888 | Open in IMG/M |
| Ga0208494_1000138 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae | 21912 | Open in IMG/M |
| Ga0208494_1000498 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 8185 | Open in IMG/M |
| Ga0208494_1000628 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 7098 | Open in IMG/M |
| Ga0208494_1000876 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 5571 | Open in IMG/M |
| Ga0208494_1000883 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → Syntrophus gentianae | 5543 | Open in IMG/M |
| Ga0208494_1003142 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2442 | Open in IMG/M |
| Ga0208494_1003977 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria → Candidatus Nomurabacteria bacterium | 2069 | Open in IMG/M |
| Ga0208494_1005718 | All Organisms → cellular organisms → Archaea | 1630 | Open in IMG/M |
| Ga0208494_1005753 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1624 | Open in IMG/M |
| Ga0208494_1007173 | Not Available | 1411 | Open in IMG/M |
| Ga0208494_1007186 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1409 | Open in IMG/M |
| Ga0208494_1008694 | All Organisms → cellular organisms → Bacteria | 1241 | Open in IMG/M |
| Ga0208494_1010929 | All Organisms → Viruses → Predicted Viral | 1065 | Open in IMG/M |
| Ga0208494_1011888 | Not Available | 1008 | Open in IMG/M |
| Ga0208494_1015201 | Not Available | 861 | Open in IMG/M |
| Ga0208494_1015943 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria → Candidatus Nomurabacteria bacterium | 835 | Open in IMG/M |
| Ga0208494_1016256 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 824 | Open in IMG/M |
| Ga0208494_1017062 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula | 799 | Open in IMG/M |
| Ga0208494_1017947 | All Organisms → cellular organisms → Bacteria | 773 | Open in IMG/M |
| Ga0208494_1017994 | Not Available | 772 | Open in IMG/M |
| Ga0208494_1019417 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 734 | Open in IMG/M |
| Ga0208494_1019717 | Not Available | 727 | Open in IMG/M |
| Ga0208494_1021878 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 682 | Open in IMG/M |
| Ga0208494_1024160 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 641 | Open in IMG/M |
| Ga0208494_1026094 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 612 | Open in IMG/M |
| Ga0208494_1030076 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 562 | Open in IMG/M |
| Ga0208494_1030910 | Not Available | 553 | Open in IMG/M |
| Ga0208494_1032374 | Not Available | 538 | Open in IMG/M |
| Ga0208494_1032635 | Not Available | 535 | Open in IMG/M |
| Ga0208494_1034288 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 520 | Open in IMG/M |
| Ga0208494_1034840 | Not Available | 515 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208494_1000070 | Ga0208494_100007047 | F074841 | MKSMSAKTKKEVLKDLEMYFGRPPYDSEHVRQHLTSGLFEQQALMKYGFTPIELMIGLEQVRLSKKQKVEALKDLKMYFGAPPVSRKALDQRLTSGLLEAQILAKYLMTVEELMKEVGYKVSK |
| Ga0208494_1000138 | Ga0208494_10001385 | F085861 | MSISQEASKNFGNLCCGPWTHQRNPARKMKIGILLVIIGLIWLGARLGLLDFSWLQAVHFWPTVFILLGVWMVYKGFRQGKPRTIDDKKEDV |
| Ga0208494_1000498 | Ga0208494_10004987 | F058557 | MAIARFENVDVNTLTFAVDSYGSGNTIITKKFTSRPLVSSVKNSVAILEKYRVYSDLIQFKFNYTPWLRDVIFNQNLYSFTWNGQDWRVTDAIEANDRMSVTVMCYRSDPATKV |
| Ga0208494_1000628 | Ga0208494_10006283 | F001991 | MAIFNKNTLTQVSGFDNPIIAGELVYNQKTFWNLTMQASDGTPISLVGATIDASIIRRQLSNIQDTRYGLTFDIADYTVSTPTAISLTISNRVDANGTFTLTIDESAWSVLTSDTQLDISATSPVGFSGRIKISFPASGTTPAQDSIIFLLFLVRSDGVTN |
| Ga0208494_1000876 | Ga0208494_10008764 | F085861 | MSINQAASKNFGNLCCRAWTHQGNPARKKKIGIMLVTIGLIWLGARMGLLDFSWLQAVYFWPAVLIFLGAWMVYKGSMRGISRTSDNKTKEV |
| Ga0208494_1000883 | Ga0208494_10008837 | F055311 | MAEDLLDYWVRLIKTIFPANAWINSHFSNNDHLIQIDWKLQNDSENPTKRSKKIEIIIKEGAIEDYLDKNKKDRELSDIMLKEFICERYNHFISGNDIHANQYASTEKWLISRDVLNCKPSLDTPPRDQVKSVYQ |
| Ga0208494_1003142 | Ga0208494_10031426 | F024029 | MNEHIWTASGTDIEERWIKQYGWVRPSEQPEYQAKYKYYQELPLRKLDDVAKNEYEIALRKAKVVRIK |
| Ga0208494_1003977 | Ga0208494_10039772 | F002824 | MTKLTATALKPGNGKPTTEDLAGLAVVKTVLSPESTKTEEKKSLIKIEPEKPVIPTPEPKKEMTLIEKILKVENLQLVVEKRAKLVQTRSELERFQVSSNDFNCTMRLNDSDGNVFTTSFTPGIKKVIDFLKTSFDASIADVENKITF |
| Ga0208494_1005718 | Ga0208494_10057184 | F040697 | VIAMQFTKKFVDDEIMDDILKEAADGYGDLIAAALVHNVSVKSLQTRVVELRDLRATWIS |
| Ga0208494_1005753 | Ga0208494_10057532 | F088111 | SEADTTLTTLWSFIDANKFDFYACGHSHLYARRTIDGSLAPYPQPAHPVPAWQNNVVQLLNGTCGAGSGGGIIDPTVRSEWNVHNDHKTYYFSVVDISGSTVTVNSYKGYTGAYSVFDTFKITK |
| Ga0208494_1007173 | Ga0208494_10071733 | F053985 | MTFKLQIDTPTTYIKLHIAGKAIHEAALLAYYCEGKRQAVFHEDVEREIDALLTTLGVDARAIASAIDEATEALQYQVENLRAALRCIEDLPPREIEEAWGVATRALRDNDEFAALPLK |
| Ga0208494_1007186 | Ga0208494_10071862 | F025283 | MLDKQNIIVESLESPPANKGLEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNISVS |
| Ga0208494_1008694 | Ga0208494_10086942 | F074841 | MKNLSAKMKGQAIKDIEMYFGRPPYESEHVRHHLTSGLFEEQSLMKYGLTPIELMKELQVIKLSKKAKQGALKDLKMYFGEPPVKRKTVRKRVSSGLLEMQILAKYLMTVDELMREVGFEVIK |
| Ga0208494_1010929 | Ga0208494_10109292 | F032299 | MYETPQVIADQMSTEMYGGDAPTHADIIKSANARAQKRHEVKGQHVADVGVLPDSAEMIHNEMVGARNSGYLVKKGLEFGVNAFYNTLPPGMDIEDQENSDIRKMDLYAYEGGLGYPGDGWVYRASGSMMPKTKDMGRPSMTNAVSGKKI |
| Ga0208494_1011888 | Ga0208494_10118882 | F023511 | NDDFLSERRIFYNDERFFENEKVFFYRNSFSAYDTFRFTGKSDINLEYERSIGATVREEKDTFFNAPSKQFSAKETENCKANSGWISLSEKNCLRELLLSTEAYEQIGKELFQIIVKSTKVTPFLKGGEYLYNLEIEYERSYQNAFFSVHIPESSANTILLPEPLTWDNMEVSFDDMEITFDQIEF |
| Ga0208494_1015201 | Ga0208494_10152011 | F049375 | LMLSILIADQPLDLSDDFSVSLNLKSPIFNDVGDYSFPFKVPSTARNMSILGWKNRLSSTRSIYETFDGSIRWNGIVLFVGQVKIKTASDKTFEGTLYINKGNFNYEVKDLLLDRIDMGMKTFPTDQDAVNYFNWSLTHFYPEVDFSLPEIANLDFFDPVATNPELMAYNHIFPDGWLHKTTTDGQSRTILIPFLYLKFVLNKLAENFGYRLQDEFFTSSIELSRLVIYHSVNLSEVIFGLQQIYYCRFLPKVKVSEFISGLEKWFNCCFHVDSKQRVVRIVSNKE |
| Ga0208494_1015943 | Ga0208494_10159431 | F002824 | MTKLTATALKPGNGKPTTEDLAGLAVVKTVISPESNKPEEKKALLKIEPEKPVIPTPEPKREMTLIEKILKVENLQLVVEKRAKLVQTRSELERFQVSSNDFNCTMRLNDSDGNVFTTSFTPGIKKVIDFLKTSFDASIADVENKITF |
| Ga0208494_1016256 | Ga0208494_10162561 | F055311 | MAEDLLDYWVRLIKTIFPANAWINSRFSNNDYLIQIDWKLQNDSENSTKRSRKIEIIIKEGVINDYLDKNKKDRDLSDIILKEFFCERYNHSISDNDIDTNQYASTKTWLISKDVINCKPPFNTPLRDQVRPVYQ |
| Ga0208494_1017062 | Ga0208494_10170621 | F053838 | TLMRWNFWSFGMPPVTEYSGASAKTTGRAFFLLGVKRDLPTSPAGDMGLLVHLSH |
| Ga0208494_1017947 | Ga0208494_10179472 | F055825 | LNLEIIEHHQQWVLEAFRRGEFDQIEVIGEADEKEFFELCFKEKLLAALA |
| Ga0208494_1017994 | Ga0208494_10179941 | F025903 | MIDITEEPNLISFAGNPVIYEACSDNYLISLGTPAHFELVVSSIDSTVGHSFHLQFAGKTLIFQSAGFTGFDGLLFEVAYIGQTFNDFANNIYQCFLSNYDIQKYFNVTLDPPGTSQRSIKLQAKESGADGSVVLSNVGVSGVAAGIN |
| Ga0208494_1019417 | Ga0208494_10194171 | F103134 | MYGRVIDGGKQMSKGLSKGINDKLAGFEEENERRATIATAVKNAFTVRHLSDQTTNNSNNGKFQTIK |
| Ga0208494_1019717 | Ga0208494_10197171 | F019989 | MNTTQNNIAAPSVTIAPRNPARGVLTFVVTLTTFKDTRSYPCRSMESAIKLVERFIAGVTKHARPSTPEAETNPHQYDGPPRTAEQVAA |
| Ga0208494_1019814 | Ga0208494_10198142 | F064732 | MESMPKVSELKWKDMEAATGAALAAARERCTMPPALSAERHVKFPSSPMAPGRCTA |
| Ga0208494_1021878 | Ga0208494_10218781 | F039529 | DGPKVRNAGGSLAAANKPVAKAKTSPDNKAEELQKKAQAGDKNAARDLLATMLASNKRRT |
| Ga0208494_1024160 | Ga0208494_10241601 | F017644 | MASGLPAATGDVLTASTVNGLVAFTINADATTDYTAVLTDAYQVLQPMNKATAIAFKIPTNASVA |
| Ga0208494_1026094 | Ga0208494_10260942 | F074573 | NTSILFLNPDVVQWGSLRELGPNNEVFSNADASLDQYIMEGTLIVRNPAGVAVLAGMTTGTVVTTARASTQVQRYIA |
| Ga0208494_1030076 | Ga0208494_10300762 | F012318 | MAYNSAFAPFGPTYLVGSLAAVQVKSSNNVYPSGYRFVNITSSLIRVSWQPQEPNDATSTPVVTAPALTVPSANTIAIPANGVAVLSGIPPNAWFLSSAASSVEITPGEGLN |
| Ga0208494_1030910 | Ga0208494_10309101 | F073009 | MLSILIADQSLDLSDDFSVSLNLKSPIFNDVGDYSFPFKVPSTPRNMSILGWKNRLASKRSIYETYEGSIRWNGMVLYTGQIKIKTANDKSFEGTLYINKGNFNYEIKDLLLNRVDLGMKSFPSDQDAVNYFNWSLTHFYPEVDFSVPEIGNLDFFDPQATNPELMAYNHIFPDGLL |
| Ga0208494_1032374 | Ga0208494_10323742 | F021045 | IMAGSTVQRSAGQTVALSVTSTAHSAVLIDDSTNDQINYTSFLNLGASPIAIKMGTTDPGAPVFPTDGTNGDFVLPPVMTSPMVIASPSTPYYLTAKSSSGTAGLLYVTPTADQS |
| Ga0208494_1032635 | Ga0208494_10326351 | F100246 | SGVGQGVNTPGTDDIYTDYFSILCLIRDTLNNPIGEDLKPCDFIGCARFDISDYLRSKFAAWEITRFEFPELAGNVKVHGWDYLLKYRVSFAESIAGNVRGLQSDGWKYALAGGLNHELLTSLNEKYLEYFSIPANKSKFLSWLPTTKYSRSGVMEKLFFLFQDNPTGVQYRLVVVIT |
| Ga0208494_1034288 | Ga0208494_10342881 | F009401 | MAKLRVTTIDNMTSDYEITPLLEYSFEQYAKMGFHKALLQEQKQSDIYWLCWEAMRRSGVTVKPFGEGFLETLKSVEVLESDPLE |
| Ga0208494_1034840 | Ga0208494_10348401 | F034443 | PNGPTLTDKFFYKWGDDKNKYETIFSSLSDKYIVVSCGNLGTDKDKITPRLFFVGIVGGWGTPVRLKGLANNGNLSLRYPGPNGLFNLYWKDWVNWIMDDRKSVKIEKQMDFIELKNLDFTKRYRINGINYLVSEIAVTLNKSSIKSAQLKCFTAP |
| Ga0208494_1035597 | Ga0208494_10355972 | F036227 | MPILLYREIKTTMKNSQLLKRSSVYSAIYQQMLGYQHAYLGGYVFKQDVRKKRPSEDSTLWNDLVKNTVAQPICRYIVDTINDVLFEPGVKRNVQFCQPNGTYIDSKNTEWSDLF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |