3300025262: Marine microbial communities from the Deep Indian Ocean - MP0901 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025262
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054761 | Ga0208060
• Sample Name: Marine microbial communities from the Deep Indian Ocean - MP0901 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 113415867
• Sequencing Scaffolds: 13
• Novel Protein Genes: 15
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
Not Available	8
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: East of Durban, South Africa, South Indian Ocean
• Coordinates
  • Lat. (^o): -33.55
  • Long. (^o): 39.89
  • Alt. (m): N/A
  • Depth (m): 4002.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000057	Metagenome / Metatranscriptome	3033	Y
F001625	Metagenome / Metatranscriptome	661	Y
F002753	Metagenome / Metatranscriptome	532	Y
F006551	Metagenome / Metatranscriptome	370	Y
F008912	Metagenome / Metatranscriptome	326	Y
F014154	Metagenome / Metatranscriptome	265	Y
F025141	Metagenome / Metatranscriptome	203	Y
F025142	Metagenome	203	Y
F050430	Metagenome / Metatranscriptome	145	N
F066848	Metagenome / Metatranscriptome	126	N
F082562	Metagenome	113	N
F089050	Metagenome / Metatranscriptome	109	Y
F093995	Metagenome / Metatranscriptome	106	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208060_1000076	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	29177
Ga0208060_1012769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1412
Ga0208060_1014691	Not Available	1293
Ga0208060_1017428	Not Available	1156
Ga0208060_1024878	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	909
Ga0208060_1037415	Not Available	685
Ga0208060_1041809	Not Available	633
Ga0208060_1048418	Not Available	568
Ga0208060_1048444	Not Available	567
Ga0208060_1050233	Not Available	552
Ga0208060_1050817	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	547
Ga0208060_1054629	Not Available	517
Ga0208060_1056536	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208060_1000076	Ga0208060_10000767	F008912	MKNLVVTLGITGCGKSRWLKDKSPVIETDDLRIELLDDISDSTTQEGLIFGTAAKKISKLFDTHDTVYFGATLVDSKYRIPFLQSIQDMCKHKLVIDVVIFPGIPELSKERIARDLKSGVQRADSIKFIDEQYEQYLHTMSIFNKEKNFYRSIKRSAE
Ga0208060_1012769	Ga0208060_10127692	F066848	MRFSTRSIHSLRHPQDDVYRAVSTEVGPGFAMGSSDYVLRTVLKGARQIAADQRLPVDPVAKGAGSEPELDLVA
Ga0208060_1014691	Ga0208060_10146912	F001625	MALTISTSDWTSANVRKTLSWQAALVSKLRVYAIKVTFGSGDNYATNGVSADLKEGRISTLVAVIPTYSNISREVVYDKANEKIKILEVGGSTGSAMTELANASSATNSKIFEFLVIGY
Ga0208060_1014691	Ga0208060_10146913	F089050	MVELNHDVVSFNSDTLVKGGHGVLVSVYVTKVGSGSNKVEFRNGTTGSAPIVFTIFTAAQGTYVGIQRR
Ga0208060_1017428	Ga0208060_10174281	F050430	MDKKLEEKIIGGTKIVGMLFFLIVLITTLVLPGGVDTLANLFLTKE
Ga0208060_1024878	Ga0208060_10248783	F025141	YMIECEYCTKNFVESMNGLAEKTFHEMLHEPEIVNQ
Ga0208060_1033515	Ga0208060_10335151	F000057	MAQKFNTEFNYRYQVIGNTPWEKIKTLKGFLEGRIRALALEECGKLKHQAQLSKLNYLKNGGEGLEHDILELKAE
Ga0208060_1037415	Ga0208060_10374152	F014154	MADGLFKIKPIGGKNIVVEDKRKTISPFNSAKHFKDANIPAYCDQCIYRSIDSGGNGKCPKYEAGAVCAIRNDFINLINTLDTRNPEDLKSMMDMLAKLSFENVLMAL
Ga0208060_1041809	Ga0208060_10418091	F002753	AFDIESVNDIDSDRFTPAVLDVSSVKLTDSDRFTPADFAIESVNDIDSDRFTPAVLDVSSVNDIDSDRFTPAALDVSSVKLTDSDIFTPTVFEIESVKLTDSDRFTPAAFAIESVNDTDSVRFTPAALDVSSVKLTDSDRFTPAVFEIESVNDTDSVRFTPAVFEIESVKLTDSDRFTPATFDIESVKLTDSDRFTPADFAIESVKLTDS
Ga0208060_1048418	Ga0208060_10484181	F002753	TDSVRFTPAALDVSSVNDIDSDRFTPAVFEIESVKLTDSDRFTPAVFEIESVKLTVSDRFTPAVFDIESAKLTDSDRFTPAALDVSSINDIDSDRFTPAVFEIESVNNTVSDRFTPAVFEIESVNNTDSVRFTPATFEIESVNDIDSVRFTPATFEIESVNDTDSDRFTPAVFEIESVNDTDSDRFTP
Ga0208060_1048444	Ga0208060_10484441	F006551	TDFESLDRIVSTSAEEGTLGGSGSGHYDPWAANATIDRDSGTAFDCTVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQIDVNGIQSFKGTGVGIHVDSIYGIPFIPSKDAPSDTNDSSEVGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEA
Ga0208060_1050233	Ga0208060_10502332	F025142	MGASADMTGRTTEFRIKAGSRATLQLTVADSAGTGKDLSNTTTYATGKWKVWQPNGTLIIDGNIVYTTRASGLVSYVLTAADTAIANAGIWAGEVELKDANGDISDQTQTFQFILEESY
Ga0208060_1050817	Ga0208060_10508171	F093995	MAKKSRVKSAKKTRITPRVAGVRATAGRDFQRSFQRKMNGEVGQYQGLQVWAPMDPYLGTQRREFKSAMTNPYVYRASRIQTTYVTGQGYTTEIVPRNEEDLPTEQLDEWQRTTTYDVPYLNKKMTAEQIKDKVDKLALDLDLASNIFNAYMTTLEQGRCVLALTPL
Ga0208060_1054629	Ga0208060_10546291	F002753	PADFAIESVKLTVSDRFTPAVFEIESVNNTVSDRFTPAVFETESVKLTDSDRFTPAVFETESVNDTVSDRFTPVDFATESVKLTDSDRFTPSVFETESVKLTVSDRFTPAAFEIESVKLTVSDRFTPAVFDIESVNNTVSDRFTPAVFEIESVNDTDSDRFTGAVFEIESV
Ga0208060_1056536	Ga0208060_10565361	F082562	QASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDEKKFLYREIDTKSIFLLSQLTLGV