Sample 3300025204

Overview

Basic Information
IMG/M Taxon OID	3300025204 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053074 \| Gp0054677 \| Ga0208063
Sample Name	Marine microbial communities from the Deep Atlantic Ocean - MP0203 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	105599227
Sequencing Scaffolds	20
Novel Protein Genes	20
Associated Families	17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
Not Available	12
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Odoribacteraceae → Odoribacter → Odoribacter splanchnicus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Deep Ocean Microbial Communities From The Global Malaspina Expedition
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	South of Cape Verde, Atlantic Ocean
Coordinates	Lat. (^o)	7.33	Long. (^o)	-26.0	Alt. (m)	N/A	Depth (m)	4002.51
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F002745	Metagenome	533	Y
F002753	Metagenome / Metatranscriptome	532	Y
F013096	Metagenome / Metatranscriptome	274	Y
F020717	Metagenome / Metatranscriptome	222	Y
F040684	Metagenome / Metatranscriptome	161	N
F050430	Metagenome / Metatranscriptome	145	N
F052870	Metagenome / Metatranscriptome	142	N
F068126	Metagenome	125	Y
F071317	Metagenome / Metatranscriptome	122	N
F076171	Metagenome	118	N
F082562	Metagenome	113	N
F084703	Metagenome / Metatranscriptome	112	Y
F087736	Metagenome	110	Y
F089571	Metagenome	109	N
F092695	Metagenome / Metatranscriptome	107	N
F095626	Metagenome / Metatranscriptome	105	N

Family

Category

Number of Sequences

3D Structure?

F001625

Metagenome / Metatranscriptome

661

F002745

Metagenome

533

F002753

Metagenome / Metatranscriptome

532

F013096

Metagenome / Metatranscriptome

274

F020717

Metagenome / Metatranscriptome

222

F040684

Metagenome / Metatranscriptome

161

F050430

Metagenome / Metatranscriptome

145

F052870

Metagenome / Metatranscriptome

142

F068126

Metagenome

125

F071317

Metagenome / Metatranscriptome

122

F076171

Metagenome

118

F082562

Metagenome

113

F084703

Metagenome / Metatranscriptome

112

F087736

Metagenome

110

F089571

Metagenome

109

F092695

Metagenome / Metatranscriptome

107

F095626

Metagenome / Metatranscriptome

105

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208063_1001978	All Organisms → cellular organisms → Bacteria	5238	Open in IMG/M
Ga0208063_1003152	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	3867	Open in IMG/M
Ga0208063_1004128	Not Available	3246	Open in IMG/M
Ga0208063_1005357	All Organisms → cellular organisms → Bacteria	2729	Open in IMG/M
Ga0208063_1007874	All Organisms → cellular organisms → Bacteria	2103	Open in IMG/M
Ga0208063_1009581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1812	Open in IMG/M
Ga0208063_1013344	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1408	Open in IMG/M
Ga0208063_1015735	Not Available	1243	Open in IMG/M
Ga0208063_1019093	Not Available	1065	Open in IMG/M
Ga0208063_1022095	Not Available	950	Open in IMG/M
Ga0208063_1022553	Not Available	936	Open in IMG/M
Ga0208063_1022910	Not Available	924	Open in IMG/M
Ga0208063_1027910	Not Available	794	Open in IMG/M
Ga0208063_1028315	Not Available	785	Open in IMG/M
Ga0208063_1033077	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Odoribacteraceae → Odoribacter → Odoribacter splanchnicus	698	Open in IMG/M
Ga0208063_1037215	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	639	Open in IMG/M
Ga0208063_1040529	Not Available	598	Open in IMG/M
Ga0208063_1046518	Not Available	535	Open in IMG/M
Ga0208063_1047173	Not Available	529	Open in IMG/M
Ga0208063_1049968	Not Available	505	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0208063_1001978

All Organisms → cellular organisms → Bacteria

5238

Open in IMG/M

Ga0208063_1003152

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota

3867

Open in IMG/M

Ga0208063_1004128

Not Available

3246

Open in IMG/M

Ga0208063_1005357

All Organisms → cellular organisms → Bacteria

2729

Open in IMG/M

Ga0208063_1007874

All Organisms → cellular organisms → Bacteria

2103

Open in IMG/M

Ga0208063_1009581

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

1812

Open in IMG/M

Ga0208063_1013344

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium

1408

Open in IMG/M

Ga0208063_1015735

Not Available

1243

Open in IMG/M

Ga0208063_1019093

Not Available

1065

Open in IMG/M

Ga0208063_1022095

Not Available

950

Open in IMG/M

Ga0208063_1022553

Not Available

936

Open in IMG/M

Ga0208063_1022910

Not Available

924

Open in IMG/M

Ga0208063_1027910

Not Available

794

Open in IMG/M

Ga0208063_1028315

Not Available

785

Open in IMG/M

Ga0208063_1033077

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Odoribacteraceae → Odoribacter → Odoribacter splanchnicus

698

Open in IMG/M

Ga0208063_1037215

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium

639

Open in IMG/M

Ga0208063_1040529

Not Available

598

Open in IMG/M

Ga0208063_1046518

Not Available

535

Open in IMG/M

Ga0208063_1047173

Not Available

529

Open in IMG/M

Ga0208063_1049968

Not Available

505

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0208063_1001978	Ga0208063_10019783	F089571	MLKKIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERIEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLARGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLARREIPMTNSVYDNLLKRIDNLEGHGPIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKKVSLNKLE
Ga0208063_1003152	Ga0208063_10031523	F013096	MVTDVVGDSAVGLSTLSHTNTVAVYEPEALGVHDNAGL
Ga0208063_1004128	Ga0208063_10041283	F040684	MKRVIYLIILAMSLTLVFSQGKPCCKNKSGKGKVACKFNQANIDVNKDGTVIEDGTQIAAVGVQCPLSAQNSSINKNNCTNCAKSPWWKFWGKKKGCCNTNS
Ga0208063_1005357	Ga0208063_10053573	F095626	LGRTTNAQPILLSTIYDLNMDLQRRLKRLRCTAFPYFLDTISPISILELLLYLNDKSLKYRDFEAFIILENADEESECFN
Ga0208063_1007874	Ga0208063_10078744	F071317	ASLIHLDECNMPCCAGLATSCCDMDQEVACPTMSDCGSSIFVLIVSGPFHKSEEKSSDSISRRFVTDLDIINIETNYVTSFGKYDPGPITFLNLPLLI
Ga0208063_1009581	Ga0208063_10095814	F050430	MDKKLKENLIVGTKIVGMLFFLIVLITTLVWPGGVDTLANLCLTKE
Ga0208063_1013344	Ga0208063_10133441	F089571	MMNMVKEKERKMLQNIIVLIISVLFLITPVSSQHVKQKYAITDKDEKVFLNDNGTWEYLGEDKQNYTLKKVPPKTYNYDSTPQTWEERMEQAAHEYWRIRAHAELDRLGISVTKYDPTTSDVPLFIKLEGGRIRTDFDPFTPLARGEVIDIAGLWNPSKGDNPTLNIHGKLFLQITMKLEDQKKLFSQYKQRNYIPIPEDFRRILKFRDSLDVISIGMHDYNRDNTHIWPGIPHSFLYAPPGTHYDPYNPPIIHGDGFPYIQRGHLTLARREIPMTNYEYDNLLNHIDKLEGYGPIKISY
Ga0208063_1015735	Ga0208063_10157351	F084703	DAVEVLPSSLPQGLFSTTDPCFLPGKLEPLGFSPPGQLRVAS
Ga0208063_1019093	Ga0208063_10190933	F087736	MMKTVAMMQVMTITGRPTLAHSAVVIGLGPRSLMATVITLALEPMGVALPPNPAPMARAQ
Ga0208063_1022095	Ga0208063_10220952	F052870	IIIGLLDEFITDLILSEKPKFSFEILSLSIDIDPIFFKYIPKNGILNNSFFKINTGELKMVCKKNVSNIDWXEHAIKNLPSDMRFSFPLIIIFVDKNIFKQIFDQCPIIFPPNKTIFXGNSRDGKKIKQISIIPK
Ga0208063_1022553	Ga0208063_10225533	F068126	MKWKFIIVMVVALVLSGCAKNVVDKNNDLGSGDKSNLPISLTSLIEHAEYCKAIYDI
Ga0208063_1022910	Ga0208063_10229101	F002745	KSFKGYLTEFAMQSTSDYVFNAGSDSSALKIPISGPMFKRIWPDTIRTTVFHATDLKGLANLKKLEGGKKSISAFFSMMSRYMETGVATSGDVHVVVEMDADVLVSAKDDIWSQVDKTGRRWVELSWFASATRTGPKFDKVEKDLNTLITNLVKKHLTPILGKNAVVREHEYELWSNMKSHLKAGREGGGNRLRLVIKDYFDGIEKVLKKNKKVMGDIIYGYTKSKRMTDNAWDEQIVNNIKIKTVHVWKTNRDDVWGEKEIKQHITDVHKWPIKVWDAPIELEAYTREVAKKELGK
Ga0208063_1027910	Ga0208063_10279101	F020717	SIVACTRFLALLETTQCWDFLRPHHILHENKDIRCFRDLNEQKDISISVLKLMLSEN
Ga0208063_1028315	Ga0208063_10283151	F020717	SIVACTRFLALLETTQCWDFLRPHHILHENKDIRCFRDLNEEKDISISALELMLPEN
Ga0208063_1033077	Ga0208063_10330771	F076171	DHSHPFNSRLEEFRNHVDLKSKKAFYQLAKIDSSQFFRVIKGFQKPGFGFFEKIANAFPDLNLSWLLIGEGEMILDRVNDAEKTILENYRKLPDEGKIGFEVRTNLYEREYLEHKELMGNIVDVAMNNENKLPFMSWELYNCLQVLQNSRVNKIISIQKKPSKMAVFDTSELKSQLKSQLENNEADIQKLISLDAEYIKEFFTNTNE
Ga0208063_1037215	Ga0208063_10372151	F082562	LIHPILGGFGGTIGIEKNKFSYGLNSFGTKLNHMTKHYLLVNAEELAVYNWGVELYSDYYLKQNHAGIFLGLISSLNGFRFNDTPIPQTILVVYSVPRIGYRAYLPKKLKSFYFQFSLTTHFKVWNNKKKILYQEIDTKSIFLISQLTLGMKI
Ga0208063_1040529	Ga0208063_10405291	F002753	ERFTPAVFEIESVNDIDSDRFTPAALDVSSVNDTDSVRFTPADFAIESVNDTVSVRFTPAAFEIESVNDIDSDRFTPAAFAIESVNDTDSDRFTPAAIAIESVKLTDSVRFTPAAFAIESVKLTDSVRFTPAAFEIESVNDTDSDRFTPAAFEIESVNNTVSVRFTPAVFEIESVNNTVSDRFTPADFAIESVKLTVSD
Ga0208063_1046518	Ga0208063_10465181	F092695	LTIEGRKTAKVDGGYDGGKYIKKVNNLAIPCYSWWRGKDLNLRPSGYEFYV
Ga0208063_1047173	Ga0208063_10471731	F002753	FTPAAVDIESVNNTVSDRFTPAAFEIESVKLIVSDRFTPAAVEIESVKLIVSDRFTPAAVEIESVNNTVSDRFTPVVFEIESVNNTVSDRFTSAAVPVEIESVNNTVSDRFTPAAVDIESVNNTVSDRFTPAAFEIESVNNTVSDRFTPAAFEIESVNNTVSDRFTPAVFEIESVN
Ga0208063_1049968	Ga0208063_10499681	F001625	MALTISTTDWTSANVRKTLSWQAALVSKLRVYAIKVTFGSGDNYATNGVSADLKEGRISTLVAVIPTYSNISREVVYDKANEKIKILEVGGSTGSAMTELANNSSATNSKIFEFLVIGY

Scaffold ID

Protein ID

Family

Sequence

Ga0208063_1001978

Ga0208063_10019783

F089571

MLKKIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERIEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLARGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLARREIPMTNSVYDNLLKRIDNLEGHGPIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKKVSLNKLE

Ga0208063_1003152

Ga0208063_10031523

F013096

MVTDVVGDSAVGLSTLSHTNTVAVYEPEALGVHDNAGL

Ga0208063_1004128

Ga0208063_10041283

F040684

MKRVIYLIILAMSLTLVFSQGKPCCKNKSGKGKVACKFNQANIDVNKDGTVIEDGTQIAAVGVQCPLSAQNSSINKNNCTNCAKSPWWKFWGKKKGCCNTNS

Ga0208063_1005357

Ga0208063_10053573

F095626

LGRTTNAQPILLSTIYDLNMDLQRRLKRLRCTAFPYFLDTISPISILELLLYLNDKSLKYRDFEAFIILENADEESECFN

Ga0208063_1007874

Ga0208063_10078744

F071317

ASLIHLDECNMPCCAGLATSCCDMDQEVACPTMSDCGSSIFVLIVSGPFHKSEEKSSDSISRRFVTDLDIINIETNYVTSFGKYDPGPITFLNLPLLI

Ga0208063_1009581

Ga0208063_10095814

F050430

MDKKLKENLIVGTKIVGMLFFLIVLITTLVWPGGVDTLANLCLTKE

Ga0208063_1013344

Ga0208063_10133441

F089571

MMNMVKEKERKMLQNIIVLIISVLFLITPVSSQHVKQKYAITDKDEKVFLNDNGTWEYLGEDKQNYTLKKVPPKTYNYDSTPQTWEERMEQAAHEYWRIRAHAELDRLGISVTKYDPTTSDVPLFIKLEGGRIRTDFDPFTPLARGEVIDIAGLWNPSKGDNPTLNIHGKLFLQITMKLEDQKKLFSQYKQRNYIPIPEDFRRILKFRDSLDVISIGMHDYNRDNTHIWPGIPHSFLYAPPGTHYDPYNPPIIHGDGFPYIQRGHLTLARREIPMTNYEYDNLLNHIDKLEGYGPIKISY

Ga0208063_1015735

Ga0208063_10157351

F084703

DAVEVLPSSLPQGLFSTTDPCFLPGKLEPLGFSPPGQLRVAS

Ga0208063_1019093

Ga0208063_10190933

F087736

MMKTVAMMQVMTITGRPTLAHSAVVIGLGPRSLMATVITLALEPMGVALPPNPAPMARAQ

Ga0208063_1022095

Ga0208063_10220952

F052870

IIIGLLDEFITDLILSEKPKFSFEILSLSIDIDPIFFKYIPKNGILNNSFFKINTGELKMVCKKNVSNIDWXEHAIKNLPSDMRFSFPLIIIFVDKNIFKQIFDQCPIIFPPNKTIFXGNSRDGKKIKQISIIPK

Ga0208063_1022553

Ga0208063_10225533

F068126

MKWKFIIVMVVALVLSGCAKNVVDKNNDLGSGDKSNLPISLTSLIEHAEYCKAIYDI

Ga0208063_1022910

Ga0208063_10229101

F002745

KSFKGYLTEFAMQSTSDYVFNAGSDSSALKIPISGPMFKRIWPDTIRTTVFHATDLKGLANLKKLEGGKKSISAFFSMMSRYMETGVATSGDVHVVVEMDADVLVSAKDDIWSQVDKTGRRWVELSWFASATRTGPKFDKVEKDLNTLITNLVKKHLTPILGKNAVVREHEYELWSNMKSHLKAGREGGGNRLRLVIKDYFDGIEKVLKKNKKVMGDIIYGYTKSKRMTDNAWDEQIVNNIKIKTVHVWKTNRDDVWGEKEIKQHITDVHKWPIKVWDAPIELEAYTREVAKKELGK

Ga0208063_1027910

Ga0208063_10279101

F020717

SIVACTRFLALLETTQCWDFLRPHHILHENKDIRCFRDLNEQKDISISVLKLMLSEN

Ga0208063_1028315

Ga0208063_10283151

F020717

SIVACTRFLALLETTQCWDFLRPHHILHENKDIRCFRDLNEEKDISISALELMLPEN

Ga0208063_1033077

Ga0208063_10330771

F076171

DHSHPFNSRLEEFRNHVDLKSKKAFYQLAKIDSSQFFRVIKGFQKPGFGFFEKIANAFPDLNLSWLLIGEGEMILDRVNDAEKTILENYRKLPDEGKIGFEVRTNLYEREYLEHKELMGNIVDVAMNNENKLPFMSWELYNCLQVLQNSRVNKIISIQKKPSKMAVFDTSELKSQLKSQLENNEADIQKLISLDAEYIKEFFTNTNE

Ga0208063_1037215

Ga0208063_10372151

F082562

LIHPILGGFGGTIGIEKNKFSYGLNSFGTKLNHMTKHYLLVNAEELAVYNWGVELYSDYYLKQNHAGIFLGLISSLNGFRFNDTPIPQTILVVYSVPRIGYRAYLPKKLKSFYFQFSLTTHFKVWNNKKKILYQEIDTKSIFLISQLTLGMKI

Ga0208063_1040529

Ga0208063_10405291

F002753

ERFTPAVFEIESVNDIDSDRFTPAALDVSSVNDTDSVRFTPADFAIESVNDTVSVRFTPAAFEIESVNDIDSDRFTPAAFAIESVNDTDSDRFTPAAIAIESVKLTDSVRFTPAAFAIESVKLTDSVRFTPAAFEIESVNDTDSDRFTPAAFEIESVNNTVSVRFTPAVFEIESVNNTVSDRFTPADFAIESVKLTVSD

Ga0208063_1046518

Ga0208063_10465181

F092695

LTIEGRKTAKVDGGYDGGKYIKKVNNLAIPCYSWWRGKDLNLRPSGYEFYV

Ga0208063_1047173

Ga0208063_10471731

F002753

FTPAAVDIESVNNTVSDRFTPAAFEIESVKLIVSDRFTPAAVEIESVKLIVSDRFTPAAVEIESVNNTVSDRFTPVVFEIESVNNTVSDRFTSAAVPVEIESVNNTVSDRFTPAAVDIESVNNTVSDRFTPAAFEIESVNNTVSDRFTPAAFEIESVNNTVSDRFTPAVFEIESVN

Ga0208063_1049968

Ga0208063_10499681

F001625

MALTISTTDWTSANVRKTLSWQAALVSKLRVYAIKVTFGSGDNYATNGVSADLKEGRISTLVAVIPTYSNISREVVYDKANEKIKILEVGGSTGSAMTELANNSSATNSKIFEFLVIGY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025204: Marine microbial communities from the Deep Atlantic Ocean - MP0203 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences