3300025200: Marine microbial communities from South of Eden, South Pacific Ocean - MP1434 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025200
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054678 | Ga0208569
• Sample Name: Marine microbial communities from South of Eden, South Pacific Ocean - MP1434 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 48745839
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South of Eden, South Pacific Ocean
• Coordinates
  • Lat. (^o): -38.64
  • Long. (^o): 150.41
  • Alt. (m): N/A
  • Depth (m): 4001.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045803	Metagenome	152	Y
F060979	Metagenome / Metatranscriptome	132	Y
F063768	Metagenome / Metatranscriptome	129	N
F084715	Metagenome / Metatranscriptome	112	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208569_1003066	Not Available	1568
Ga0208569_1005089	Not Available	1244
Ga0208569_1014892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	689
Ga0208569_1019338	Not Available	590

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208569_1003066	Ga0208569_10030662	F063768	GVAEFVVLAELSTALSERLGGWSTDGADPDSSATMASLAARLDEHSTWWTGRIPESVLLEGERTAASGSGQLAEVLGLLDVAASDRRAAVEPVLDRLVAYLVALAERLSPLGDAPAIRTIRLVLADLEDRPR
Ga0208569_1005089	Ga0208569_10050894	F084715	PIIASIIFVLEFEVNNPTAHVNITRDITLGFISNMKDFI
Ga0208569_1014892	Ga0208569_10148922	F045803	MLKLFRISILLLFFSLIIPNLSFSNDLIERIKKIEKSVSDAEDAFAIGSKGHFQSLEKLLEVRKKLVKAKDMFAEIKTYENKLETAHYRNTTIRILDDLEPLTKYIIEHSGLDP
Ga0208569_1019338	Ga0208569_10193381	F060979	VTTTTEDEQLASIALGDGDGGSQPPIQDDDSGGSFLTDPGTLAAAAGVAAAVGLGLSGLGSRLLGGLLRFLGGTGFGLFLIGLFRRDKRPGPPIDFTIFTDGPLTHLEWSSPTTGGPAEKYVLEGRKDGR