3300025195: Marine microbial communities from the Deep Atlantic Ocean - MP0261 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025195
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054585 | Ga0208062
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP0261 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 51672713
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -3.03
  • Long. (^o): -27.33
  • Alt. (m): N/A
  • Depth (m): 4002.04

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043697	Metagenome / Metatranscriptome	156	Y
F045803	Metagenome	152	Y
F084715	Metagenome / Metatranscriptome	112	Y
F089570	Metagenome	109	N
F105349	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208062_104312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063	1735
Ga0208062_107601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1219
Ga0208062_107722	All Organisms → cellular organisms → Bacteria	1206
Ga0208062_109765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1038
Ga0208062_115712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	750

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208062_104312	Ga0208062_1043125	F084715	APAPKATKVIPIIASIIFVLEFEVNNPTAHVNITRDITLGFISNMKDFI
Ga0208062_107601	Ga0208062_1076011	F043697	IDAALMAQLVAIQAADAMEEGLVSPQHLVVDTFPSEQGSQRVTDATTLYKAKKKSSKSSN
Ga0208062_107722	Ga0208062_1077222	F105349	MKTLVFQSKIGNGSLTWDRKNMRLLKTDQLIIENCLASVQSWCKKLGYEYKFVTQDLKWNLEFLSKNDVQLNCAFQNWAHLPKEGYDQIIYLDNDIFIFEDTGSPPIVDFGLVCRLGDQIQYAKHYCGNNSLWWNSGVVVMSQKRCRHLSNWMLDYIPRARELPLFRDLPREESLITEYCAKYKPTKLDPIWNTMPPQTPVPMYSEAKFIHLLGASKLNTLLKCPKEIQKVVMKNIDVSEKITADTVGNELRWQ
Ga0208062_109765	Ga0208062_1097651	F045803	MLKLFRISILLLFFSLIIPNLSFSNDLIERIKKIEKSVSDAEDAFAIGSKGHFQSLEKLLEVRKKLVKAKDMFAEIKTYENKLETAHYRNTTIRILDDLEPLTKYIIEHSGLDPK
Ga0208062_115712	Ga0208062_1157121	F089570	FFCILFLNTKIPLSESERPSLDFNEKQKTIVSNALSNCGDYNFDDLLNTRKKELGIREPDKSINKKKQLDNSLGIEVSRSIETIYTPEQSLANVKKILSSINDDRLYPAVAYYIIKDFAFYEHGLCKSLRNHFQTYNIYKEFYFKTKNKELDPIYENENNLNFFYKNTSNARKRLLLAIQSKKRLLEKEQFLLKNLEIFINYI