3300025192: Marine microbial communities from the Deep Atlantic Ocean - MP0145 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025192
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054787 | Ga0208064
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP0145 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 43858761
• Sequencing Scaffolds: 18
• Novel Protein Genes: 20
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium JCVI-SC AAA005	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2
Not Available	8
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: West of Cape Verde, Atlantic Ocean
• Coordinates
  • Lat. (^o): 14.52
  • Long. (^o): -26.0
  • Alt. (m): N/A
  • Depth (m): 4005.01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F004537	Metagenome / Metatranscriptome	434	Y
F005516	Metagenome	398	Y
F007606	Metagenome / Metatranscriptome	348	Y
F010693	Metagenome	300	Y
F010879	Metagenome / Metatranscriptome	298	Y
F016878	Metagenome	244	Y
F021319	Metagenome	219	N
F039182	Metagenome	164	Y
F042383	Metagenome / Metatranscriptome	158	Y
F045995	Metagenome	152	N
F052659	Metagenome / Metatranscriptome	142	N
F076187	Metagenome	118	Y
F082562	Metagenome	113	N
F085813	Metagenome	111	N
F089571	Metagenome	109	N
F097373	Metagenome	104	N
F097524	Metagenome / Metatranscriptome	104	Y
F099440	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208064_100381	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium JCVI-SC AAA005	7208
Ga0208064_100685	All Organisms → cellular organisms → Bacteria → Proteobacteria	4997
Ga0208064_100858	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	4400
Ga0208064_100894	All Organisms → cellular organisms → Bacteria → Proteobacteria	4295
Ga0208064_101635	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2862
Ga0208064_103083	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1822
Ga0208064_103240	Not Available	1761
Ga0208064_105333	Not Available	1205
Ga0208064_106268	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium JCVI-SC AAA005	1067
Ga0208064_106529	Not Available	1036
Ga0208064_106607	Not Available	1026
Ga0208064_107071	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	976
Ga0208064_107288	All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	957
Ga0208064_108645	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	844
Ga0208064_110957	Not Available	713
Ga0208064_111759	Not Available	678
Ga0208064_112701	Not Available	641
Ga0208064_116949	Not Available	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208064_100381	Ga0208064_1003814	F052659	MLLSGNPGTETRSAVFIDGRLISSLPELNYQSIDKLQQGGVPDKVSWMKPSLRGRLRLVKLQAQERNLTIEDLNQSIRSKWVIL
Ga0208064_100685	Ga0208064_1006853	F097524	MFENDNLYLPVAEQRPFVNVQLKTAETISAAETQLGPQ
Ga0208064_100858	Ga0208064_1008583	F097373	MYNMGTQKERSERLHVLAQMKQQHDKDQTSEVLSRHLLEDYMIQMWYVGHQTRMDYLEVLFRSQKR
Ga0208064_100858	Ga0208064_1008589	F004537	VPFSFKQNQPTISDVPLLYPIRVLCPQGVQTNISFPDQFLGRAIALKISNNDAANAATYDYNLNRVFANLAASSFDTVDSAVVNYMTINAGAAGTVLVEAQILPLIKAEPEIEVQV
Ga0208064_100894	Ga0208064_1008944	F099440	VLLIILKNQVLNGAKLIDGNGRKIMVCGLHNTGQEKYIENFSQWTCNLLASCI
Ga0208064_101635	Ga0208064_1016356	F021319	TKIRPPPIPNRLDIIPAKKLAPAEKTSKRRDTSMGFSSIFLLRNMYDAEEIRISANKILKMSGDISEDTNAPSIVPGTAIKPSFQPSESSIRFCLAYMVVDATELLNTANRLLLTANVGENPANVNTGTIIIPPPRPIIDPNIPAINPSGINQSSSSMLYRY
Ga0208064_103083	Ga0208064_1030836	F076187	THFFEFISIEKFFENFNTSRNVKSFPKIPLIPDTDIFNASNLDTLFINSERKWLVPR
Ga0208064_103240	Ga0208064_1032401	F010693	MIGFLIFGLVVLSTICLWILIEERKSWKFLIWFIPILLVIVTSTYVTYTSILGLPKVGIPEKGLYLRHYIDEPNWIYLWVLSKKNVPMSYQLVYSREKHNALEGVKGQAEEG
Ga0208064_105333	Ga0208064_1053332	F085813	MDQFEIIWILVTVIGALNYGLNAYQKGFRRLLKWDVIFLIVLNTLMFVPLSLIVGL
Ga0208064_106268	Ga0208064_1062681	F099440	QLIILKNQVLNGVKLIDENGRKIMVCGLHNTGQEKNIENFSQWTCNLLASCIMYVD
Ga0208064_106529	Ga0208064_1065291	F045995	MWTNNIVTFYGADEDLKKVAERLYSPGETSEEDNCFDFNKIIPFPNELSYIHSSRFNSGKKMIHGREYEQWYYVNSDGKMIENNPDNYFEKSRLKGMSSRMEKQFMRKYGALNDTDWRAINWGTIWNSNSGPGEKYREKLVYNFRTNYGSARLIVLEIDSMIYRGEFPKVKMMWEHDNVDVHLCFMEDDEYVPDPTPVFTVGFAETEKSTAEYYKW
Ga0208064_106607	Ga0208064_1066071	F005516	MKSFKGYLTEFAIQSTSDYVFNAGSDSSALKIPISGPMFKRIWPDTIRATVFHTTDLGGLKKLKRLEGGKKTISAFFSMMSRYMETGVATGGGIVAEMEADVIVSARDDIMSQVDNKGRRWVEMSWFEYQTRERSKFSKVERELNDLIRELVLKHLSPILGKDRARREPEFDLWADMKKHMSGDGKALSLAIK
Ga0208064_106607	Ga0208064_1066072	F000245	MKTFKQFDEGSFDASDKKMDAFVVKEIKKRKLAKFPVNATDDYKMKKGKPAFKIPSPTGSMMIHVWLRKMAPSKGQPKGMMAFNYQLEDK
Ga0208064_107071	Ga0208064_1070711	F089571	LVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERIEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLAKGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYEQRNYIPLPEDFQRILEFRDSLDVISIGMHDYNRDNTHIWPGIPHSFLYAPPGTHYDPYNPPIIHGDGFPYIQRGHLTLARREIPMTNSEYDNLLNHIDKLEGYGPIKISYDMGNGIIESITFEEIWLKINPYNGDPAHLLRKINLLKN
Ga0208064_107288	Ga0208064_1072882	F016878	MKSFKGYLKERFQDWKSGSAPAWTESLSTMLFDLPRAELADVKIPLSPSIFSRVWPKPVRSRVFHLTDFDGVKKLKGMQGKKRSISAFYNIDDYMISSGIKTEGGYVVELEGDVLAASPDDVSSQPDKSGRRWITFSSLTNPSTAADP
Ga0208064_108645	Ga0208064_1086451	F082562	MNNIILMKTIILGILITLSTNLFAQTNDSLRNYFLDIELSIIHPILGGFGGTIGIERNHSSFGVMGFGTKLNHMMKHYFIEDAEELAVYNWGVELYSDYYIKQNHRGLFIGSLVSINGFRFTDIPNPQTILVLYAVPRVGYRICLPKKLNAFYFQPSLTAHIKFWDNQEQFLYREIDTKSIFLLSQLTFGMKI
Ga0208064_110957	Ga0208064_1109571	F039182	MKWMYIIIMAVALGLSGCANVADAEDSTATTPAETQDTSTSEEASDDETWIAVVLTWNPVVRVIDKEFTSEVECWNFYEGGTGESRFGEQHRDHQGNLPTKDSHFGPDYLEYPIRTYRGKDGQGSVWLTCDL
Ga0208064_111759	Ga0208064_1117592	F042383	METTYNNFPTPDDFYEGPSDEELKKIEEDLERYSD
Ga0208064_112701	Ga0208064_1127012	F007606	MKWKFIIVMVVALFLSGCAKNIVDKNNDLGSGDKSNLPISLTSLIEHAEYCKSIYDLGGDQKDEVAFEVIQDNGISIIVIRGTANEGNVLSDIDVRLVEDVRTGIYLHKGFRDASITIMQILDDE
Ga0208064_116949	Ga0208064_1169491	F010879	WRIKMAQKRKVLKEVLFDDVEEKIEYDFLTRDQFFTKVPETRPMSVRGIEMWERYLQDPKGFKF