3300025172: Freshwater sediment bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - Sed-PBS metaG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025172
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0154774 | Ga0209105
• Sample Name: Freshwater sediment bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - Sed-PBS metaG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 68057874
• Sequencing Scaffolds: 8
• Novel Protein Genes: 10
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3
All Organisms → cellular organisms → Bacteria	1
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → bayou → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001796	Metagenome / Metatranscriptome	633	Y
F006111	Metagenome / Metatranscriptome	381	N
F009516	Metagenome	316	Y
F014495	Metagenome / Metatranscriptome	262	Y
F019929	Metagenome / Metatranscriptome	227	Y
F022635	Metagenome	213	Y
F029044	Metagenome / Metatranscriptome	189	Y
F090615	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209105_107140	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1554
Ga0209105_112920	All Organisms → cellular organisms → Bacteria	925
Ga0209105_114775	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	826
Ga0209105_117515	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	716
Ga0209105_119519	Not Available	652
Ga0209105_123026	Not Available	567
Ga0209105_123034	Not Available	566
Ga0209105_125901	Not Available	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209105_107140	Ga0209105_1071401	F022635	MGVYKNTGEFNILYPTRRKVANVLRKVIKDEGLIDSGTLYESVRINAKVSLEGNLRIEILAAYYFGFLNNGTISIAPFHLVRKFNTALEQSGLISEMYGQYVSKLAQTFPILELGGLLRKKVKVIYDFQPL
Ga0209105_107140	Ga0209105_1071402	F006111	MISYQALTDEIIAFYNAHLQVKKVGTDFKEQLFNFATKDEKYPLVYVVPVDAIPSENVTLFTLEIYCFDIIQKDRANITTILSDTQQILNDLYLNYTFSLIDTDFDVEGFPTFIPLNNDLLDYAAGWLMTITFVIPSWTDCQIPKQIGD
Ga0209105_112920	Ga0209105_1129202	F090615	PSLIAALRVRKGWLRPDSSIVDKAAAEGLKKLGVLLCPPPDADKRSATVKQINEIAAEYLKTVPQARLLIEESAVEQQASWDPDKVYVERTDADIHGNLVTAIKIANAERLRAAEAKAAAGS
Ga0209105_114775	Ga0209105_1147752	F014495	MIKTPQQAAPLGRKYRVSSDSAWPLRSSIDGKTFAERRAMREKEQSK
Ga0209105_114775	Ga0209105_1147753	F009516	MSRPMVYPMGTLEVGESATMPATKKGDAKRTSRNVSQYGIRNGKAFKCRTVGGVTFITRW
Ga0209105_117515	Ga0209105_1175152	F019929	MISYQALTDEIIAFYNAHLQVKKVGTDFKEQLFNFATKDEKYPLVYVVPVDAIPSENVTLFTLEIYCFDIIQKDRANITTILSDTQQI
Ga0209105_119519	Ga0209105_1195192	F029044	MIYTQLSNDYKYDTLANAMYAREVEHFHYDFDRKNFEHLLANTTDSEFAANVAERLNDTRKQMGNVEAIMLALKEQIEDQAAYDAAVVRVTAKRETKEAK
Ga0209105_123026	Ga0209105_1230261	F001796	ANSMTQWTPVWLVEIDGVSYTDAVLANLTIRSGRTNIYEQAQAGYVNLQLLDVNQATIPVNINSSISVQVQDTSSTYVPIFGGTVVDIAVEVRDVGSTMFTQTYSITALGALSRLPKALTNGVLSKDFDGDQIWEILSDLLLNTWAEVPAAETWADYDPTTTWATAENVGLGEIDRPGDYELAARSSER
Ga0209105_123034	Ga0209105_1230341	F090615	DPSLIAALRVRKGWLRPDSSIVDKAAVEGLKKLGVLLCPPPDPEGKSIPAKLFNEIAAEYLKTVPQTRLLIEESAVEHQAFWDADQPYIDQSDEDIHEEMVTAIKMANADRLRAARAKASAGS
Ga0209105_125901	Ga0209105_1259011	F090615	MRALQLAAPEPTDPALIAALRVRKGWLRPDSPIVDKAAAEGLKKLGVLLCPPPDADKRSATVKQINEVATEYLKAVPQARLLIEEAASELQAFWDPDKPYVERTDVQLHGNLVTAIKMANADRLRAAEAKAAAGISSWIAIE