3300025161: Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC9 2012 metaG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025161
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0115602 | Ga0209381
• Sample Name: Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC9 2012 metaG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 661598733
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
Not Available	2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota → Candidatus Methanomethylicia → Candidatus Methanomethylicales → Candidatus Methanomethylicaceae → Candidatus Methanosuratincola → unclassified Candidatus Methanosuratincola → Candidatus Methanosuratincola sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Canada: British Columbia
• Coordinates
  • Lat. (^o): 49.9543
  • Long. (^o): -116.5155
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001564	Metagenome / Metatranscriptome	670	Y
F007154	Metagenome / Metatranscriptome	357	Y
F016403	Metagenome / Metatranscriptome	247	Y
F024517	Metagenome / Metatranscriptome	205	Y
F028182	Metagenome / Metatranscriptome	192	N
F037787	Metagenome	167	Y
F045784	Metagenome / Metatranscriptome	152	Y
F046728	Metagenome	151	Y
F048673	Metagenome / Metatranscriptome	148	Y
F056638	Metagenome / Metatranscriptome	137	N
F061147	Metagenome / Metatranscriptome	132	Y
F062987	Metagenome	130	Y
F069685	Metagenome	123	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209381_1005760	All Organisms → cellular organisms → Bacteria	9807
Ga0209381_1005873	All Organisms → cellular organisms → Bacteria	9611
Ga0209381_1016839	All Organisms → cellular organisms → Bacteria	3882
Ga0209381_1035833	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2171
Ga0209381_1049459	All Organisms → cellular organisms → Bacteria	1702
Ga0209381_1056202	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1545
Ga0209381_1071417	All Organisms → cellular organisms → Bacteria	1289
Ga0209381_1095400	All Organisms → cellular organisms → Bacteria	1037
Ga0209381_1115880	All Organisms → cellular organisms → Bacteria	897
Ga0209381_1150260	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	740
Ga0209381_1154310	Not Available	725
Ga0209381_1194620	Not Available	610
Ga0209381_1248296	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota → Candidatus Methanomethylicia → Candidatus Methanomethylicales → Candidatus Methanomethylicaceae → Candidatus Methanosuratincola → unclassified Candidatus Methanosuratincola → Candidatus Methanosuratincola sp.	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209381_1005760	Ga0209381_10057601	F024517	MYGLHTIQDVHRLVKAFAGVPDCFVPLKTRREISYPLSFRVPLSQVEEIDAAAAREKRKRRSDLLEAIWEVAWAEYKRAGSLEAYASGRRGRGYTRRVSEELQDQIFTAVELILERAPSAVIEELARKLT
Ga0209381_1005873	Ga0209381_10058735	F062987	MKNPHAVALGKLGGIARVFRTTPEQRRRWARRGGLARARRYSREQLSQWAKLGGRPRKKEGGA
Ga0209381_1016839	Ga0209381_10168391	F046728	MKLFHWGLLLRYMVYGVLPLILLFIVAEKVVGAGPAGSFFVLLALALPFVAIGWLGYQHWRHRDRDGDQKPK
Ga0209381_1035833	Ga0209381_10358332	F007154	MNSVLGEWRESKVRPIPGNAPHDRPVSRGMISPRSIGDDAFRTTRFPPHSGILPGPSVGVFKAWRNLSGPMGYQNQTLARDPTASRRSAPSQGQRTRREDRAPSHRPQMSSGRLFLDRVGRHQSPSPLHRQPEHNTHSPGGQAKGDISTLPERGHFYFALTKMIWALTRPVGGCTFEQFRIPK
Ga0209381_1049459	Ga0209381_10494591	F016403	MEPKVCLVLREFSTYNRAWTQILRNLGIDYTLCTATSGGAAANIQTPQGVFNASSSDLRNYFRQFDAVILCDNTNNLSATSLINYSVFWMSWNTPEDPAFLFFNPHFSAAITDDTYNSNFPSDFPIIRPNASDLAGTLYAADGGSTTGGD
Ga0209381_1056202	Ga0209381_10562021	F001564	PKLTCGEWPERPSLRFLIHWALRREELCDPGLCPDAPDDGGRCGHCPLDKLDAAQSSEAGMLLRRAIDLRAALKLGVRIGLDEIRADEFRALLMLAEERDTLDREQLNQHGRQ
Ga0209381_1071417	Ga0209381_10714172	F028182	MRYDTHVMPKVSISEAARRFDTTEEVICEWIRLELLDMEPPPAKPRRTRELNLAFQPTSAAPEPKVDLKQLYEVAEEVGWLLLSLEAWDRADTETACRLSHTGTIPPP
Ga0209381_1095400	Ga0209381_10954002	F061147	MNSRTRTTTAPSPSLQAQLAQIGLDAVAAELDDFLARATKQRWSPRQ
Ga0209381_1115880	Ga0209381_11158801	F056638	MSSGWLQRWRDAYYTENPIVWLLAKTESELCLRQISAPETAETGSAPSRLQLLKSDPVYSTRYFLWADEKEFERTLLAPWHLPSNRWMPVSDQIYLAFASLVTMTALVIHYALAKSPVWVGAIGVGAVVLAFFLPMARPMLALHSLAQTLTADTPLHIGVSRLTPAHLVYGALVYGVGRIARASAVYGILPALLVATIAQGTVFRGLPTAILLWGYSVCVGALWILCTLATVYGQATRLYGASRDWVRWQNILALAAGLLSASLLAV
Ga0209381_1150260	Ga0209381_11502602	F045784	PLPALDLSRYPEAQALEVRPHNLETYDELAHPHDDGSEP
Ga0209381_1154310	Ga0209381_11543102	F048673	MRTLAILLILVAIAASQPHHWLSVILAAIAHLLGR
Ga0209381_1194620	Ga0209381_11946201	F069685	EALKERIAELEAENEKLKATITEATKTLTAYVERERETAIKSILEKTTISKDELEKLDLTQLRLIEKGVDNVKGTVKNVRSAGNAQCEGENRLTVGCLYHRKERE
Ga0209381_1248296	Ga0209381_12482961	F037787	KIYSDDPNLPYETTKLKALYTKSEIDGVFATRGVKDVYWHWDPEHNDVFVQFKIVEEIDGLPLQVAAKVEAPAIWDHKTRSKAECVNWDISMRVMYWSIKSHLEAAYLLQSSKTAAFLPYIASKDDATVLKDVIIPRMNEAQQLSALPEPVTRKVVDADK