Sample 3300025104

Overview

Basic Information
IMG/M Taxon OID	3300025104 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111485 \| Gp0138775 \| Ga0209721
Sample Name	Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Tshipise hot spring metaG (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	227655718
Sequencing Scaffolds	15
Novel Protein Genes	18
Associated Families	17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	South Africa: Tshipise
Coordinates	Lat. (^o)	-22.6092	Long. (^o)	30.1749	Alt. (m)	N/A	Depth (m)	2 to 3
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001564	Metagenome / Metatranscriptome	670	Y
F008501	Metagenome	332	Y
F012675	Metagenome / Metatranscriptome	278	Y
F013791	Metagenome / Metatranscriptome	268	Y
F018544	Metagenome / Metatranscriptome	234	Y
F038253	Metagenome / Metatranscriptome	166	N
F041729	Metagenome	159	Y
F049080	Metagenome	147	Y
F051242	Metagenome	144	Y
F053057	Metagenome	141	Y
F062520	Metagenome / Metatranscriptome	130	N
F070754	Metagenome / Metatranscriptome	122	Y
F088948	Metagenome / Metatranscriptome	109	N
F090019	Metagenome / Metatranscriptome	108	N
F095698	Metagenome	105	N
F103321	Metagenome / Metatranscriptome	101	N
F103505	Metagenome / Metatranscriptome	101	Y

Family

Category

Number of Sequences

3D Structure?

F001564

Metagenome / Metatranscriptome

670

F008501

Metagenome

332

F012675

Metagenome / Metatranscriptome

278

F013791

Metagenome / Metatranscriptome

268

F018544

Metagenome / Metatranscriptome

234

F038253

Metagenome / Metatranscriptome

166

F041729

Metagenome

159

F049080

Metagenome

147

F051242

Metagenome

144

F053057

Metagenome

141

F062520

Metagenome / Metatranscriptome

130

F070754

Metagenome / Metatranscriptome

122

F088948

Metagenome / Metatranscriptome

109

F090019

Metagenome / Metatranscriptome

108

F095698

Metagenome

105

F103321

Metagenome / Metatranscriptome

101

F103505

Metagenome / Metatranscriptome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209721_1000268	Not Available	51786	Open in IMG/M
Ga0209721_1001735	Not Available	15338	Open in IMG/M
Ga0209721_1005763	All Organisms → cellular organisms → Bacteria	5066	Open in IMG/M
Ga0209721_1006072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4798	Open in IMG/M
Ga0209721_1006088	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	4791	Open in IMG/M
Ga0209721_1006479	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4539	Open in IMG/M
Ga0209721_1008548	Not Available	3465	Open in IMG/M
Ga0209721_1008755	Not Available	3384	Open in IMG/M
Ga0209721_1017131	Not Available	1772	Open in IMG/M
Ga0209721_1017957	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1695	Open in IMG/M
Ga0209721_1022912	Not Available	1368	Open in IMG/M
Ga0209721_1033487	Not Available	989	Open in IMG/M
Ga0209721_1034805	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	958	Open in IMG/M
Ga0209721_1040262	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	849	Open in IMG/M
Ga0209721_1067806	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	562	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0209721_1000268

Not Available

51786

Open in IMG/M

Ga0209721_1001735

Not Available

15338

Open in IMG/M

Ga0209721_1005763

All Organisms → cellular organisms → Bacteria

5066

Open in IMG/M

Ga0209721_1006072

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

4798

Open in IMG/M

Ga0209721_1006088

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium

4791

Open in IMG/M

Ga0209721_1006479

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

4539

Open in IMG/M

Ga0209721_1008548

Not Available

3465

Open in IMG/M

Ga0209721_1008755

Not Available

3384

Open in IMG/M

Ga0209721_1017131

Not Available

1772

Open in IMG/M

Ga0209721_1017957

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

1695

Open in IMG/M

Ga0209721_1022912

Not Available

1368

Open in IMG/M

Ga0209721_1033487

Not Available

989

Open in IMG/M

Ga0209721_1034805

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6

958

Open in IMG/M

Ga0209721_1040262

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium

849

Open in IMG/M

Ga0209721_1067806

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

562

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0209721_1000268	Ga0209721_100026829	F041729	MSAKTFEGSVSIVKNTKGEIALKRDPEGRFSAANAAECYAKMMELCKRLKSPVNKYSLFIADGGTEPVMLANRFGNPYIALLPKRGDGNVKRSAVTKLA
Ga0209721_1001735	Ga0209721_100173513	F008501	MLERMYKKSAVDLTDLALGVVVLGIVVSVGVTILTNIRDTNQPNSPAYNITNMAANGLAEYGNWFKIIVIIGVAAVILALIFMAFGKGSNTVGSTY
Ga0209721_1005763	Ga0209721_10057635	F051242	MKEDDPSKANDEKSLKLTVCKPEDQAFQRLHLCEYLSELYESAEEENKSSVEKKKA
Ga0209721_1006072	Ga0209721_10060726	F103505	MDPLLLQELQTRLLNWLTQGYQVLADDVDGELRVTVLYVSPGTGVGSERVQEYWPMSAETAKLLNDHGIVISRALAGPRPWPGVHPEDI
Ga0209721_1006088	Ga0209721_10060881	F053057	LKIRDIITAEVIETSAGASFDDLESFTVPPGTFLEVTHVAVENRTNDYTRLVIGVADGISFYQKEEENNPRANDIYWTRSKFLIPE
Ga0209721_1006479	Ga0209721_10064793	F012675	MTAIVSAGVAVSQHGGWYRCIAAYLLLPKLDDLLEVKKMGDAQNVVSVVQKLRNEALRESLGAFGIEVPARYVRTSSSTGRSRVRIPREQKQQLVENFLDALPTFEGLKEVLDSLPSNTNLTVKQIRSLVNRYLSIANRLQTQATQEEDTQE
Ga0209721_1008548	Ga0209721_10085485	F103321	MYYYDDMEVDQSQSDCIKIPAMNERTHLIAYNMKDALTDLLHKAVSLSNAKSNLYGEIGDSDVKVLIYSLPTKLIMNTAKLFGDSIRGDIDEGTIIDIITYSLYIHSVVNGNDYRNIESILNDSYKIIQQRHYDYNSADLIYDRLSMSDITSMIHIKAIRIKNLLNNIDKSNDNGVIESIKSRIIDSIYDLMIYIAMAFLKLYRV
Ga0209721_1008755	Ga0209721_10087552	F088948	MPGYLFYYHRQTPSIQLPNLHEVLQDSKTINTISYERVTDFGIVPFLFVEGIPSNPYYDITNKIKQHLKTQNIEPEKIKVVHYQKDEIHQYGQSRIPWHYIGTKITKQKISIEDINKKLDKIKLDKSEVLFLESTRVGKELLGFLAERDVDAVEMLKFFLDRASQKLKVEVPIKDYDLLYDMLYDVYEYYIWYGVRSEIGNFHTLIENFYRYYLLNVLPKAVGLYWLDTYYDPSALVTQIKL
Ga0209721_1017131	Ga0209721_10171311	F090019	KLDGLVSYLNRILGAARRIVRSVRVPDPMPPGNIIVGSDYFAAKIIMADGLTGLGANAETALQQFIADRYSKKLAQVYEGVRIPFTEQDYVSLAQQGFPGVRRLRWAINSDYAEVDYEILTTMQPQKTTFIL
Ga0209721_1017131	Ga0209721_10171312	F070754	MIVRDFSFDIIDSTTNTYKPFDPLTGTLILAPLDRYKIRVRDRYFVVIEPLQGNIDDPDPNAFVTAYSGGWGPGGTFSLNLLSQDFEQEGFAIHDEVFVFLHWATSTSAFHCTIIGLNGSSATFRTIDFTGSAPNIQAPLRAVIILLSDRSEIKPSFHFGNNSGPTSPLSAIPFTSPHADAIIAYTSTDPTDLPSPLTYNLQKYASMENSIVSYGNYLLGFSPLDFRRRAIIVEGTQFYAYRTNLDPQAQAQTTLYALDGRIEVLLQAPASVRDAALTFPCLLLHPNRKGRTLNFLNPGALNISGGIYTLNPPSGFSPTRYVLAVTGRDSDHPRLDIGDSLALTNPVMGATGTVPTIANRPGAEFVGVMIGQDGVEWVAVMTNKEPATTPTAGAFQVYYHQGPIYRYDSLMAELTGPDTPAGIYIIQTLLKVGNSFVPIDEIEYDTANIVTAPWPWSP
Ga0209721_1017957	Ga0209721_10179572	F038253	MPFVSRVFPCAFDDMSAMETHGKNTKGVQEELLRIIQSDEARELIESMANRMAVIEEAYYRIRELREAVQPYIPDNSEYDEDYWIAAYLVRPHASTVIEKFRQLREIQHKLAKIEGQLQEMDRHGSYLEDKLGDLDAAQENMGDKIYKLISEDAKSYLSFGDSNLYDLLYESTREWAAKQLSANRS
Ga0209721_1017957	Ga0209721_10179573	F018544	MTQVQNSGTELKVRIEKALQERSLKKLITKLAKELDGEHSFLPQAVEAQIRNEIASAGVAVSQYGGWYRCIAAYLLLPKLDDLLQVKEMGDSRNVAPIVQKLRKEALRESLSAFGVEMPTRYARTSSSTGQRKVRIPREQKQQLVESFLDALPTFEGLR
Ga0209721_1020332	Ga0209721_10203322	F012675	LSAFGVEVPTRYARTSSSTGQRKVRIPREQKQQLVESFLDALPTFEGLREVLDTLPSNTNLTVKQIRSLVKRYFSIANRLQTKTYQEETTQE
Ga0209721_1022912	Ga0209721_10229121	F062520	MANRRFVAVVAAVPNLKVDELKRLPTFVDERNIPDMGGNLKTWRWTNNPEVYEIYYNEAGILRYHYFTDRISNDSIKNLIDFVRNNKIDAQVPNNAFINASYVFSTTVEQSPELYSAIIAPAMFLEADNVGLARGMTSYGFKIANQTYDLVLKAMWESVVIHVELSVVYNTQSVVGLDTVLPHMLEVLSNEHRILSSRIFTADKAVAR
Ga0209721_1033487	Ga0209721_10334871	F095698	MRIFLESEEFWFEDFKVDNLMEAISKLKALYRDCRECFKEDRIVRKIGIIIE
Ga0209721_1034805	Ga0209721_10348051	F013791	KPQKLVNLPAGCCIGAREITHPCKVESRSGTNMKVFISYGDAADQVTALRLQALGAANGLTVYVPPAYTRQGAQAFLDPVTSQKLSDAEVVLGFVGNTLSEACRQELNTGLALRKNMIVMAYPHIAEQLQPYLSRHLVVVDPANPDQSEIGIVEHLRQIEAQQNAKKALLALGTLVLGLLILAPAEQS
Ga0209721_1040262	Ga0209721_10402621	F001564	SLRFLIHWALRRDELCDPGLCPDAPDDSGRCGHCPLDKLDAAQSSEAGLLLRRALDLRAALKLGVRIRLDEIRADEFQALVVLEEERDALEREQMQMNAHGR
Ga0209721_1067806	Ga0209721_10678061	F049080	TLSKEEIVHLYHGGILSVKIKGKEGDANLEISCGEVPEKKGTRIRFKTIEAE

Scaffold ID

Protein ID

Family

Sequence

Ga0209721_1000268

Ga0209721_100026829

F041729

MSAKTFEGSVSIVKNTKGEIALKRDPEGRFSAANAAECYAKMMELCKRLKSPVNKYSLFIADGGTEPVMLANRFGNPYIALLPKRGDGNVKRSAVTKLA

Ga0209721_1001735

Ga0209721_100173513

F008501

MLERMYKKSAVDLTDLALGVVVLGIVVSVGVTILTNIRDTNQPNSPAYNITNMAANGLAEYGNWFKIIVIIGVAAVILALIFMAFGKGSNTVGSTY

Ga0209721_1005763

Ga0209721_10057635

F051242

MKEDDPSKANDEKSLKLTVCKPEDQAFQRLHLCEYLSELYESAEEENKSSVEKKKA

Ga0209721_1006072

Ga0209721_10060726

F103505

MDPLLLQELQTRLLNWLTQGYQVLADDVDGELRVTVLYVSPGTGVGSERVQEYWPMSAETAKLLNDHGIVISRALAGPRPWPGVHPEDI

Ga0209721_1006088

Ga0209721_10060881

F053057

LKIRDIITAEVIETSAGASFDDLESFTVPPGTFLEVTHVAVENRTNDYTRLVIGVADGISFYQKEEENNPRANDIYWTRSKFLIPE

Ga0209721_1006479

Ga0209721_10064793

F012675

MTAIVSAGVAVSQHGGWYRCIAAYLLLPKLDDLLEVKKMGDAQNVVSVVQKLRNEALRESLGAFGIEVPARYVRTSSSTGRSRVRIPREQKQQLVENFLDALPTFEGLKEVLDSLPSNTNLTVKQIRSLVNRYLSIANRLQTQATQEEDTQE

Ga0209721_1008548

Ga0209721_10085485

F103321

MYYYDDMEVDQSQSDCIKIPAMNERTHLIAYNMKDALTDLLHKAVSLSNAKSNLYGEIGDSDVKVLIYSLPTKLIMNTAKLFGDSIRGDIDEGTIIDIITYSLYIHSVVNGNDYRNIESILNDSYKIIQQRHYDYNSADLIYDRLSMSDITSMIHIKAIRIKNLLNNIDKSNDNGVIESIKSRIIDSIYDLMIYIAMAFLKLYRV

Ga0209721_1008755

Ga0209721_10087552

F088948

MPGYLFYYHRQTPSIQLPNLHEVLQDSKTINTISYERVTDFGIVPFLFVEGIPSNPYYDITNKIKQHLKTQNIEPEKIKVVHYQKDEIHQYGQSRIPWHYIGTKITKQKISIEDINKKLDKIKLDKSEVLFLESTRVGKELLGFLAERDVDAVEMLKFFLDRASQKLKVEVPIKDYDLLYDMLYDVYEYYIWYGVRSEIGNFHTLIENFYRYYLLNVLPKAVGLYWLDTYYDPSALVTQIKL

Ga0209721_1017131

Ga0209721_10171311

F090019

KLDGLVSYLNRILGAARRIVRSVRVPDPMPPGNIIVGSDYFAAKIIMADGLTGLGANAETALQQFIADRYSKKLAQVYEGVRIPFTEQDYVSLAQQGFPGVRRLRWAINSDYAEVDYEILTTMQPQKTTFIL

Ga0209721_1017131

Ga0209721_10171312

F070754

MIVRDFSFDIIDSTTNTYKPFDPLTGTLILAPLDRYKIRVRDRYFVVIEPLQGNIDDPDPNAFVTAYSGGWGPGGTFSLNLLSQDFEQEGFAIHDEVFVFLHWATSTSAFHCTIIGLNGSSATFRTIDFTGSAPNIQAPLRAVIILLSDRSEIKPSFHFGNNSGPTSPLSAIPFTSPHADAIIAYTSTDPTDLPSPLTYNLQKYASMENSIVSYGNYLLGFSPLDFRRRAIIVEGTQFYAYRTNLDPQAQAQTTLYALDGRIEVLLQAPASVRDAALTFPCLLLHPNRKGRTLNFLNPGALNISGGIYTLNPPSGFSPTRYVLAVTGRDSDHPRLDIGDSLALTNPVMGATGTVPTIANRPGAEFVGVMIGQDGVEWVAVMTNKEPATTPTAGAFQVYYHQGPIYRYDSLMAELTGPDTPAGIYIIQTLLKVGNSFVPIDEIEYDTANIVTAPWPWSP

Ga0209721_1017957

Ga0209721_10179572

F038253

MPFVSRVFPCAFDDMSAMETHGKNTKGVQEELLRIIQSDEARELIESMANRMAVIEEAYYRIRELREAVQPYIPDNSEYDEDYWIAAYLVRPHASTVIEKFRQLREIQHKLAKIEGQLQEMDRHGSYLEDKLGDLDAAQENMGDKIYKLISEDAKSYLSFGDSNLYDLLYESTREWAAKQLSANRS

Ga0209721_1017957

Ga0209721_10179573

F018544

MTQVQNSGTELKVRIEKALQERSLKKLITKLAKELDGEHSFLPQAVEAQIRNEIASAGVAVSQYGGWYRCIAAYLLLPKLDDLLQVKEMGDSRNVAPIVQKLRKEALRESLSAFGVEMPTRYARTSSSTGQRKVRIPREQKQQLVESFLDALPTFEGLR

Ga0209721_1020332

Ga0209721_10203322

F012675

LSAFGVEVPTRYARTSSSTGQRKVRIPREQKQQLVESFLDALPTFEGLREVLDTLPSNTNLTVKQIRSLVKRYFSIANRLQTKTYQEETTQE

Ga0209721_1022912

Ga0209721_10229121

F062520

MANRRFVAVVAAVPNLKVDELKRLPTFVDERNIPDMGGNLKTWRWTNNPEVYEIYYNEAGILRYHYFTDRISNDSIKNLIDFVRNNKIDAQVPNNAFINASYVFSTTVEQSPELYSAIIAPAMFLEADNVGLARGMTSYGFKIANQTYDLVLKAMWESVVIHVELSVVYNTQSVVGLDTVLPHMLEVLSNEHRILSSRIFTADKAVAR

Ga0209721_1033487

Ga0209721_10334871

F095698

MRIFLESEEFWFEDFKVDNLMEAISKLKALYRDCRECFKEDRIVRKIGIIIE

Ga0209721_1034805

Ga0209721_10348051

F013791

KPQKLVNLPAGCCIGAREITHPCKVESRSGTNMKVFISYGDAADQVTALRLQALGAANGLTVYVPPAYTRQGAQAFLDPVTSQKLSDAEVVLGFVGNTLSEACRQELNTGLALRKNMIVMAYPHIAEQLQPYLSRHLVVVDPANPDQSEIGIVEHLRQIEAQQNAKKALLALGTLVLGLLILAPAEQS

Ga0209721_1040262

Ga0209721_10402621

F001564

SLRFLIHWALRRDELCDPGLCPDAPDDSGRCGHCPLDKLDAAQSSEAGLLLRRALDLRAALKLGVRIRLDEIRADEFQALVVLEEERDALEREQMQMNAHGR

Ga0209721_1067806

Ga0209721_10678061

F049080

TLSKEEIVHLYHGGILSVKIKGKEGDANLEISCGEVPEKKGTRIRFKTIEAE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025104: Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Tshipise hot spring metaG (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences