3300025095: Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A2 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025095
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053054 | Gp0056902 | Ga0208977
• Sample Name: Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A2 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 270649229
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2
All Organisms → cellular organisms → Archaea → DPANN group	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007341	Metagenome / Metatranscriptome	353	Y
F030514	Metagenome	185	Y
F046803	Metagenome / Metatranscriptome	150	Y
F056711	Metagenome / Metatranscriptome	137	Y
F065251	Metagenome / Metatranscriptome	128	Y
F067453	Metagenome	125	Y
F086459	Metagenome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208977_1027119	All Organisms → cellular organisms → Bacteria	1466
Ga0208977_1031920	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1314
Ga0208977_1035293	All Organisms → cellular organisms → Archaea → DPANN group	1228
Ga0208977_1038300	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1163
Ga0208977_1055661	Not Available	906
Ga0208977_1085887	Not Available	678

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208977_1027119	Ga0208977_10271194	F007341	VDVVFAPSAFRHGYAEQDFYELLAGRYLKIRSQRGLDDVYELLGRNLSGDYLHIVYRMLPAGRLRVFHISRMTEKQKRRYQRLER
Ga0208977_1031920	Ga0208977_10319203	F086459	VIYAKDRILAELDSAGAQLASLAADLKASRAVLQARLKRPPPFMPLEEYDCHFANAFTHIERAKMAVRAMHPVCHQADFLKRKTEKKGHRQ
Ga0208977_1035293	Ga0208977_10352932	F065251	MYLRFFKKGRKKYYYIAKAVRKGVRVIQKSILYVGTADTLY
Ga0208977_1038300	Ga0208977_10383002	F046803	MAKEGQTFEQWLRGAKVPPEQLSDQQRAVLHAAFQFLQPSNGDYSSSRIAGYFLLHCKVGLKVAQIARLVGISTRSAFRHGKLSARQVVQQIQHRFNGRPYGKLLPRHAGSIAEFLFTHPGATRDELLDFIGHTWEFRVSKVALWEFLKKYGLDRASLEEARQAASREEEERVTVEVLDARAPGGLVPVVPDKFFLPIPSTPGLSCCGPKCSLGSTRPASALATTTVRSSGVS
Ga0208977_1055661	Ga0208977_10556611	F067453	RLDRAVQRFAEWLHRRIAGPVQVRFNSHRLSGGAYVYPDAAPDARITFDTPEIGLGARLITPASVQRRRDRAWSKGEGSSLAALEWEDCWTESTPLSYNVLVYPEFLRDPNDLGEHKPSDRFGYWSVKTPREAYRLLQRLIVKGTFHAQL
Ga0208977_1085887	Ga0208977_10858871	F056711	GGIVPPHKGEDVMGRGTQSPCPLCFPLRIRMRKAFTALAAAAFALSIVAGGCAKDKSPSQLQAGKKGIAGTEKKAAPKPRAKLFTGTIEDMDEAAGTLTLKGPKGEMSFQARKKVKEQLGELEIGDKVIVKHDGKTALSIVKPRTSKTALAWYRNEETETVREEFH
Ga0208977_1131495	Ga0208977_11314951	F030514	SLDFMHAQPADVKSLIQKRLGASETPIVDHIYALVTKYAARNGIPSQKAIENTLLGTPFKGKLTNFDKLTDFSMAREVAEGK