3300025076: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - 3C3 metaG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025076
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0154762 | Ga0209316
• Sample Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - 3C3 metaG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 50898861
• Sequencing Scaffolds: 10
• Novel Protein Genes: 12
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → bayou → fresh water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002934	Metagenome / Metatranscriptome	519	Y
F004790	Metagenome / Metatranscriptome	423	Y
F010245	Metagenome / Metatranscriptome	306	Y
F014116	Metagenome / Metatranscriptome	265	Y
F023348	Metagenome / Metatranscriptome	210	N
F030424	Metagenome	185	N
F048958	Metagenome / Metatranscriptome	147	Y
F059951	Metagenome / Metatranscriptome	133	Y
F062551	Metagenome / Metatranscriptome	130	Y
F090615	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209316_102217	Not Available	3323
Ga0209316_102971	Not Available	2484
Ga0209316_105643	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1289
Ga0209316_109703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	790
Ga0209316_111521	Not Available	685
Ga0209316_112594	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	638
Ga0209316_115445	Not Available	546
Ga0209316_115924	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	535
Ga0209316_116949	Not Available	512
Ga0209316_117143	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209316_102217	Ga0209316_1022177	F090615	AAPEPTDPSLIAALRVRKGWLRPDSSIVDKAAAEGLKKLGVLLCPPPDPEGKSIPAKLFNEIAAEYLKTVPQARLLIEESAVEHQASWDPDKVYVERTDEEIHEKLVTAIKMANADRLRAAKAKAAAGS
Ga0209316_102971	Ga0209316_1029711	F090615	VRAAPVPAPAASGTLTRNEKLAQIRALQLAAPEPTDPSLIAALRVRKGWLRPDSPIVDKAAAEGLKKLGVLLCPPPDPDGKSIPERRFIDIATEYLKAVPQARLLIEESAVEHQASWDPDKVYVERTDADIHEEMVTAIKIANGERLRAARAKASAGS
Ga0209316_105643	Ga0209316_1056434	F002934	MKHPAIISIGAFLAVWGTTSNFSLDYRAILGSIVAGVFGYATPKK
Ga0209316_105643	Ga0209316_1056435	F059951	MSTQDYAALAVAIVTVLGGVTAMLNFMIKHYLAELKPNSGSSMKDAVNRLETRVDKIYEILCDKSQ
Ga0209316_105643	Ga0209316_1056436	F048958	MARKKVIDLDTYTALDAWAISLQEMYRALRRAGFEVDLALAVIVEPSAYPDWIIPKPDLIPHTYE
Ga0209316_109703	Ga0209316_1097032	F004790	VAWARKVGLSPDRVAFLLACPKYTVSKGHRKSDKVITDNPNHHLQRLGDCYWFRLRRRGTDIVENIGHDLETARKRRDEMLAAFDSGQPIPHLNRK
Ga0209316_111521	Ga0209316_1115212	F090615	RAAPVPAPAQKPTPAASGTLTRSEKLAQMRALQLAAPEPTDPSLIAALRVRKGWLRPDSSIVDKAAVEGLKKLGVLLCPPPDPEGKSIPAKLFNEIAAEYLKTVPQTRLLIEESAVEHQAFWDADQPYIDQSDEDIHEEMVTAIKMANADRLRAARAKASAGS
Ga0209316_112594	Ga0209316_1125941	F023348	MKKNFNNQNFEWLFQDITSSMPKIIFTGIILTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAVVFIDFLNPSDKRSKYPPRVAAIATVIALLELWFSIQGQSTGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRTRRRVVREVTKTNISSTQPIKFTMAVCFILTVAY
Ga0209316_115445	Ga0209316_1154451	F010245	YAATHNGQSYIGLTRKGTVTVTKAVKERWRKHISRAKHEDRAWVLYQYIKGGAWDGWTHEVLDIVRGRAEAYAYERELVKAIQPELNDQYL
Ga0209316_115924	Ga0209316_1159241	F014116	VADNSADIAKRIILGCVAEGMTIEQACASAGKSIKTYEYYRRTDKVFCDKVDRTRLG
Ga0209316_116949	Ga0209316_1169491	F030424	MIDSIQFAELELRVNDLTNALARVIEERDNYKDTADSLFRELESCRVALVQASSDISRLRVYLAQGAEL
Ga0209316_117143	Ga0209316_1171432	F062551	MKKIITFLLLTAAFAATAWDQRAPLPPQACAVHSPWGWAQTARPAQPICREAYFVAYDAPVKIPVYVSYTLLPQNALGCWPRTNAF