3300025068: Hot spring microbial communities from Little Hot Creek, USA to study Microbial Dark Matter (Phase II) - LHC4sed_replicate (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025068
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0127787 | Ga0209183
• Sample Name: Hot spring microbial communities from Little Hot Creek, USA to study Microbial Dark Matter (Phase II) - LHC4sed_replicate (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 145292550
• Sequencing Scaffolds: 26
• Novel Protein Genes: 26
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	20
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	1
Not Available	2
All Organisms → cellular organisms → Archaea → TACK group	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: California, Little Hot Creek
• Coordinates
  • Lat. (^o): 37.6906
  • Long. (^o): -118.8442
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004454	Metagenome / Metatranscriptome	437	Y
F013170	Metagenome	273	Y
F020112	Metagenome	226	Y
F024925	Metagenome / Metatranscriptome	204	Y
F025877	Metagenome	200	Y
F038537	Metagenome	165	Y
F064214	Metagenome	129	Y
F074155	Metagenome	120	Y
F080880	Metagenome / Metatranscriptome	114	Y
F089858	Metagenome	108	Y
F091324	Metagenome / Metatranscriptome	107	Y
F104051	Metagenome	101	Y
F104374	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209183_1000689	All Organisms → cellular organisms → Bacteria	12579
Ga0209183_1001505	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	7438
Ga0209183_1004095	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3784
Ga0209183_1007793	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2467
Ga0209183_1007830	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2460
Ga0209183_1012076	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1814
Ga0209183_1013302	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1692
Ga0209183_1017025	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1424
Ga0209183_1018512	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1339
Ga0209183_1018681	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1330
Ga0209183_1021667	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1191
Ga0209183_1025075	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1069
Ga0209183_1027040	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1011
Ga0209183_1032990	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	865
Ga0209183_1033210	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	861
Ga0209183_1033301	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	859
Ga0209183_1035254	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	822
Ga0209183_1042033	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	717
Ga0209183_1043445	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	698
Ga0209183_1044602	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	683
Ga0209183_1045570	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	671
Ga0209183_1047489	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	650
Ga0209183_1050709	Not Available	617
Ga0209183_1055766	Not Available	573
Ga0209183_1056969	All Organisms → cellular organisms → Archaea → TACK group	564
Ga0209183_1064712	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209183_1000689	Ga0209183_100068912	F074155	MAANLLSFDFIRGRLSPEQLEDLAVSLGLCLECGGNLVSRDGEIVCSSCGFVWAVENTAYYVPFPEYESADGGERNHFEGHWQPGSTLAFLKGLGDPALANSRGKALMRVLAKSPNGATDLGLRARQVKTLVEWEDPPQLRRVLSRISLLLTQMGQRENWLLADYAGKLARKIVAFKLLTREPISYKLGDAIIAHTIKKFSLKASPPNLKVENEDLQLIRQLENITQKPKHPKPAYQATHSINSN
Ga0209183_1001505	Ga0209183_100150510	F024925	HFTIIFKRIDPLVMNSQRVLIESMFRELGYEITTTAFQNLLSFKLKLLEKPVLEPLPRKELMQTLIEGMSCNSVEEAFAIEKEQLDELFPEDYPWTIREVGERIADMYRELGIEVEIEYFEGGFTLKYKSCPYYKLVKTGQKTWLCSLRKKTIEYIISRVSHGKKGKIKIIKSLLQNEHPCEYAIFLTGFLEKEEKIEAQNKPSKSNKYLLTLSLIYEGLGGRPIEF
Ga0209183_1004095	Ga0209183_10040952	F074155	MACLVGLDFIRSRLSGELLEVLALSLETCLCCGGKLVSRDGEVVCSHCGLVWSVENSTDYVPFPEHESSDGGEGSRFEGHWQPGNTLAFLKGLGDPALANSRGKGKALMRVLAKSPNGAEDLGLRARYVKTLVEWEDPPQLRKVLSRISLLLTQMGQRENWLLADFTGNLARKTVAFKLLTCQTVNANVGDAVVAYAAEKFGLKVKPQGLEAEADDLELVRMLDKFKDKPKPVTKNKTALPCRAQC
Ga0209183_1007793	Ga0209183_10077932	F038537	MIVRVYFWKDLAPLLKRFCREHNIALNRVINLAVQSFIGTSNVEELKLCAKLNQLLREEAELRRVCNAMLRSGSYLPGYVQRVLREPGRSLTYLPDPQRPLKALNPREERVFRKIAARREQIAREIAEIQEQLLRDVKPFRLKPDLRLSRSRARGKISLKEVKKPNGETA
Ga0209183_1007830	Ga0209183_10078301	F013170	MSVHLHTTITRKANDILEELAKTYGTKSRVLEKALETLLRVDKVGSCDDCTIKAKVNEQTKLREALDLASISRRNLDSLLEIAMGNKTIEDFIKEQKAEAKNTIEILKSSISWKAPSNFKEFLIVLEEIRNLTNMYEIPSYSEIDNIAILRPKVFKRLPILVAFQVATILEGIGVYFDIRVMGEDIAVKMVRPEVYPLRRKEFGEFLEQQIEKELANVTPGLFKSTLTLVGPAFMSWAEKHLEEPITDLGNLLEDARIVLGLEEFPKEPKDFVKALLSAFVKMNWFKQAKVLIERDENILELVFQAVSAPITRMSVAALSIMLATRGWKTLNYSTEHTTVNMTIQYVGAEDQSLLDQLAELSLFQVIGKQFLDVIPVPRDLFNSFASKVYESDRRKFEEIYRATGTRISNAIRMLARNDPEKIRRLAKNFILKNIDATQPDAEVRFVDDEHFTIIFKRIDPLVMNSQRVLIESMFRELGYEITTTTFQNLLSFKLKLLEKPVLEPLPRKKLMQTLIEGMSCNSVEEAFAIEKEQLDELFPEDYPWTIREVGERIIDMYRELGIEVEIEYFEGGFTLKYKSCPYYKLVKTGQKTWLCSLRKKTIEYIISRVSHGKRG
Ga0209183_1012076	Ga0209183_10120762	F004454	LKGLPKDFRRTVIEVREDLHREIRKLALLNDLRIYQLANAIIEEFLKDEQRVKTLIKRLRLEVGSPLH
Ga0209183_1013302	Ga0209183_10133022	F080880	MSIHLHTTITKKANDILEELAKTYGTKSRALEKALETLLRVDKVGSCDDCAIKAKINEQTKLREALDLTSISRRNLDSLLEIALGNKTIEDFVKEQKADAKNTIEILKSSISWKPPSNFKEFLMVLEEIRNLTNMYDIPSYSEIDNIAILRPKVFKRLPVIVAFHVATILEGIGVYFDIRVMGEDIAVKMVRPEIYPLRRKEFGEFLEQQIEKELANVTPGLFKNTLMLVGPAFMNWAEKHLEEPITDLGNLLEDARIALGVDE
Ga0209183_1017025	Ga0209183_10170252	F074155	PEYEEAGNFDGSRFEGHWQPGNTLAFLKGLGDPALANSRGRALMRVLAKSPNGAIDLGLRARQVKTLVEWEDPPQLRRVLSRISLLLAQMGQRENWLLANYTGNLARKIVAFKLLTRQPVSYKLGDAIIAHTIEKFSLKTDPPNLKVETEDLQLIRQLENATQKPKRPKPAYQESPSVNS
Ga0209183_1018512	Ga0209183_10185122	F104374	MLNSMELSARELGMLKLMVDFFAEKPELTAKIESYTTAHYALLTTYSENFGIPIEDSLKVFEELQKKITEAEYVHVKAPEPIRKLLPLTTEELNMLRIIVDYFSESPKMASAGSMFSRKEDAV
Ga0209183_1018681	Ga0209183_10186811	F074155	PEHESSDGGEGSRFEGHWQPGNTLAFLKGLGDPALANSRGKGKALMRVLAKSPNGAEDLGLRARQVKTLVEWEDPPQLRRVLSRISLLLTQMGQRENWLLADFTGKLARKIVAFKLLTGQTVWANVGDAVVAYAVEKFGFKVKPQGLEADADDLELVRMLDKLKERRNPHAKKVELPPILEKI
Ga0209183_1021667	Ga0209183_10216671	F074155	HCGLVWSVENSADYVPFPEHESSDGGEGSRFEGHWQPGNTLAFLKGLGDPTLANSRGKGKALMRVLAKSPNGAVDLGLRARYVKTLVEWEDPPQLRKVLSRISLLLTQMGQRENWLLADYTGNLARKIVAFKLLTCQTVNANVGDAVVAYAIEKFGLKVKPPDLKADADDLELARTLDKVKDKWNPQAKKRIATPSLT
Ga0209183_1025075	Ga0209183_10250751	F091324	MSIHLHTTITKKANDILEELAKTYGTKSRALEKALETLLRVDKVGSCDDCAIKAKINEQIKLREALDLTSISRRNLDSLLEIALGNKTIEDFVKEQKADAKNTIEILKSSISWKPPSNFKEFLMVLEEIRNLTNMYDIPSYSEIDNIAILRPKVFKRLPVIVAFHVATILEGIGVYFDIRVMGEDVAVKMVRPEIYPLRRKEFGEFLEQQIEKELANVTPGLFKN
Ga0209183_1027040	Ga0209183_10270401	F038537	MHRTVYFWCDLYPLLRRFCREHNVSVNKIVNLAVQSFLGGCDVVELRLQARLDCLLREEARLRRVCNAMLRSGSYLPGYVRRVLREPGRSLSHLPDAQRPLKALNPKEERVFRRIVARREQIAREIAELSEQLLRDVKPFRLKPEPKRSRSRARDKNKAPEPGGGA
Ga0209183_1032990	Ga0209183_10329902	F004454	VEKAKSFRRTVIEVREDLHHEVRKLALLNDLRIYQLANAIIEEFLRDEERVKALIKRLKLQSGHVIH
Ga0209183_1033210	Ga0209183_10332101	F104051	PVPRDLFNSFALKVYESDKRKFEEIYRTTGTRISNAIRMLARNDPEKIRRLAKNFILKNISATQPDAEVRFVDDEHFTIIFKRIDPLVMNSQRVLIESMFRELGYEITTTAFQNLLSFKLKLLEKPVLEPLPRKKLMQTLIEGMSCNSVEEAFAIEKEQLDELFPEDYPWTIREVGERITDMYRELGIEVEIEYFEGGFTLKYKSCPYYKLVKTGQKTWLCSLRKKTIEYIISRVSHGKKGKIKIIKSLLQNEHPCEYAIFLTGFLEKEEKAESQE
Ga0209183_1033301	Ga0209183_10333012	F104374	MLNSMELSARELGMLKLMVDFFAEKPELTAKIESYTTAHYALLTTYSENFGLSIEDSLKVFEELQKKIMEAEYIHVKAPEPIRKLLPLTTEE
Ga0209183_1035254	Ga0209183_10352541	F025877	MPGLEEGVTVWRYRVQDPDRFDKFRVKDLGNGVKITLGRVKGTDRWEIQNYMFDKTRFKDRESVRKWLEKHLKSEAQLLLDFRAFN
Ga0209183_1042033	Ga0209183_10420331	F074155	TADYVPFPEYEEAGNVEGSHFEGHWQPCNTLAFLKGLGDPALANSRGKGKALMRVLAKSPNGAVDLGLRARQVKTLVEWEDPPQLRRVLSRISLLLTQMGRRDNWLLANYAGNLARKTVAFKLLTRQPVGYRLGDAIIAHTIEKFSLKANPPNLKVETEDLQLIRQLENIAQKPKRPKPAYQESPSVNSN
Ga0209183_1043445	Ga0209183_10434452	F025877	MPGLEEGVTVWRYRVQDPDRFDKFRVKDLGNGVKITLGRVKGTDRWEIQNYMFDKTRFKDRESVRKWLEQHLKSEAQLLLDFRAFNEMRRRFLRAFIEIARID
Ga0209183_1044602	Ga0209183_10446021	F074155	VWAFENTADYVPFPEYEEASNFDGSRFEGHWQPCNTLAFLKGLGDPALANGRGKALMHVLAKSPNGAADLGLRARQVKTLVEWEDPPQLRRVLSRISLLLAQMGQRENWLLANYTGNLARKIVAFKLLTKQPVSYKIGDAIIAHTIEKFSLKTDSPNLKVETEDLQLIRQLENATQKPKRPKPAYQESPSVNSN
Ga0209183_1045570	Ga0209183_10455701	F074155	IRGRLSSEQLEDLAVSLGVCLECGGNLVSKDGEIVCSSCGLVWAVENTADYVPFPEYESADGGEGSRFEGHWQPGNTLAFLKGLGDPALANGKGRALMRVLAKSPNGATDLGLRARQIKTLIKWEDPPQLRKVLSRISLLLTQMGQRENWLLSNYTGNLARKIVAFKLLTKQPISYKLGDAIIAHTIEKFGLKTAASNLKAETEDLQLIQQLENITQKPKLPK
Ga0209183_1047489	Ga0209183_10474891	F089858	MEWVEFLVRLRFHVDGFYPERLTREYVEGEVRKRLSAPGLEEEGLMEIIVSEKGVDGLLNIPVKRGELWVKELGDGRFAINLDGPDDPGITCAEVHVVHEDLTEEVIRAKGVKYVILGDIPGMGKARLVRMRRVRKIEEGEGE
Ga0209183_1050709	Ga0209183_10507091	F020112	MVSKAFRKCVELVEEMLSKGFKLQISQTEVERLIKIGIGADKRTVQKYMKMLTEDLGFLKTAAKNPFGTVVYSIDIPAIEQFVSQRLKEKLRQMRLSDIRLKQDEDLKEVNIQRG
Ga0209183_1055766	Ga0209183_10557662	F025877	MPGLEEGPTTWRYRVQDPDRFDKFRVKPITRGVKITLGRVKGTNRWEIQNYIFDKTRFKDKESVRKWLEKHLKSEAQLLLDFGAFNEMRRRFLRAFIEIARID
Ga0209183_1056969	Ga0209183_10569691	F064214	LKMCHKGDLKLLIKSAEDLAYALRDTLDVIADHERRIKRLEEKLGFLADVELVVVEKCLSETFGP
Ga0209183_1064712	Ga0209183_10647121	F104374	MLNSMELSARELGMLKLMVDFFAEKPELTAKIESYTTAHYALLTTYSENFGIPIEDSLKVFEELQKKIMEAEYVHVKAPEPIRKLLPLTTEELNMLRIIVDYFSESPKMASAGSMFSRKEDAVAETY