| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025030 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053054 | Gp0054845 | Ga0209518 |
| Sample Name | Soil microbial communities from Rifle, Colorado, USA - Groundwater B1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 548620193 |
| Sequencing Scaffolds | 22 |
| Novel Protein Genes | 23 |
| Associated Families | 20 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 2 |
| Not Available | 8 |
| All Organisms → cellular organisms → Archaea | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp. | 1 |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Gottesmanbacteria → Candidatus Gottesmanbacteria bacterium GW2011_GWB1_49_7 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Rifle, Colorado, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater biome → planetary subsurface zone → groundwater |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Rifle, Colorado, United States | |||||||
| Coordinates | Lat. (o) | 39.53 | Long. (o) | -107.78 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001484 | Metagenome / Metatranscriptome | 686 | Y |
| F008498 | Metagenome / Metatranscriptome | 332 | Y |
| F015419 | Metagenome / Metatranscriptome | 255 | Y |
| F016087 | Metagenome / Metatranscriptome | 250 | Y |
| F020197 | Metagenome / Metatranscriptome | 225 | Y |
| F033383 | Metagenome / Metatranscriptome | 177 | Y |
| F033485 | Metagenome / Metatranscriptome | 177 | Y |
| F037704 | Metagenome / Metatranscriptome | 167 | Y |
| F046735 | Metagenome / Metatranscriptome | 151 | Y |
| F050940 | Metagenome | 144 | Y |
| F057792 | Metagenome | 135 | Y |
| F060838 | Metagenome / Metatranscriptome | 132 | Y |
| F069002 | Metagenome / Metatranscriptome | 124 | Y |
| F071896 | Metagenome / Metatranscriptome | 121 | N |
| F073120 | Metagenome / Metatranscriptome | 120 | Y |
| F079599 | Metagenome / Metatranscriptome | 115 | Y |
| F084915 | Metagenome | 111 | Y |
| F094578 | Metagenome / Metatranscriptome | 106 | Y |
| F098345 | Metagenome | 103 | N |
| F103138 | Metagenome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0209518_1000229 | All Organisms → cellular organisms → Bacteria | 75291 | Open in IMG/M |
| Ga0209518_1002507 | All Organisms → cellular organisms → Bacteria | 16990 | Open in IMG/M |
| Ga0209518_1008986 | Not Available | 6664 | Open in IMG/M |
| Ga0209518_1012106 | All Organisms → cellular organisms → Archaea | 5308 | Open in IMG/M |
| Ga0209518_1013994 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp. | 4798 | Open in IMG/M |
| Ga0209518_1017158 | All Organisms → Viruses → Predicted Viral | 4110 | Open in IMG/M |
| Ga0209518_1033145 | Not Available | 2495 | Open in IMG/M |
| Ga0209518_1037819 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Gottesmanbacteria → Candidatus Gottesmanbacteria bacterium GW2011_GWB1_49_7 | 2247 | Open in IMG/M |
| Ga0209518_1046841 | Not Available | 1902 | Open in IMG/M |
| Ga0209518_1052164 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 1747 | Open in IMG/M |
| Ga0209518_1052425 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium | 1740 | Open in IMG/M |
| Ga0209518_1061807 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 1528 | Open in IMG/M |
| Ga0209518_1064530 | Not Available | 1475 | Open in IMG/M |
| Ga0209518_1067900 | All Organisms → Viruses → Predicted Viral | 1417 | Open in IMG/M |
| Ga0209518_1080674 | All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium | 1235 | Open in IMG/M |
| Ga0209518_1082171 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1217 | Open in IMG/M |
| Ga0209518_1109874 | Not Available | 967 | Open in IMG/M |
| Ga0209518_1117422 | Not Available | 918 | Open in IMG/M |
| Ga0209518_1141844 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 790 | Open in IMG/M |
| Ga0209518_1144982 | Not Available | 777 | Open in IMG/M |
| Ga0209518_1186376 | All Organisms → cellular organisms → Bacteria → Terrabacteria group | 636 | Open in IMG/M |
| Ga0209518_1188525 | Not Available | 630 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0209518_1000229 | Ga0209518_100022923 | F016087 | MEPFWNILNRLMDYIGTLAVAILFAMLAFSVGYHIGFSSGLDTKVTWVGEKYTMKVTGKATKR |
| Ga0209518_1002507 | Ga0209518_10025074 | F069002 | MNYAELAQAICDWSNKSSIDKVLPTVIRFGQRDLEDDLRIRPMEYHPTTANVAAAAALLALPSDYLEMIYLLLIKDGVRCPITVRSSPVEMYSTQISTTETGTPCRVSRIADDLVFDVLLDTAYTRDWCYYRRLPVLTASTTGTPIPNTNWWSENAEEALLMSCLNKLSMYVSGIPEGDKKKWADAALETREKLKFKEARETTGGNVLRSTPFSL |
| Ga0209518_1008986 | Ga0209518_100898616 | F084915 | MEELKEWLLNEINSICKDYHNESTYMWSKGYKKTCLETLDKINKIENEKSNTKK |
| Ga0209518_1012106 | Ga0209518_10121068 | F094578 | MEKERPKGPLKRLKSMYFALHCWKCKKFELPMEEYKKLCEDNIQKIIDALEIKEMRFREFNNIIKNTNFCKFEKRDFSSCPICEKCGIPQKRFW |
| Ga0209518_1013994 | Ga0209518_10139948 | F073120 | MQLSVTEYAKRLGVTRSAVLLQIKKKRLAKGVTCKKIGNTYSLSVRGQKTNKK |
| Ga0209518_1017158 | Ga0209518_10171583 | F071896 | MATQPKIQPLDADTKVRIINNSNGKIYWTQLNGRPITLLKIGAPATLPFIELENMAYTSDLIQTGDIYVQDKNVYNQLGLNVKYEDIKLHTQLKLMLANLSSEELKEEIEKLPNGNKELLAELAVENYNDLKGSVVDTIEDGTKVKVTLIKEDEKANKQNQQKNEK |
| Ga0209518_1033145 | Ga0209518_10331454 | F016087 | METFWKILNKLMDYLGTLAVALLFAMLAFSVGYHIGFSSGLDTKVTWVGEKYTMKVTGKGIKR |
| Ga0209518_1037819 | Ga0209518_10378191 | F037704 | MVKAMQQEMLTGDLPPTRATELLIRLSALIGNTNEEIRGADSAYAAVLLRELEQNEKANRARIRAETTEEYARKREARDTKELVLELTRSLKYLIRSAQEEMRLAR |
| Ga0209518_1046841 | Ga0209518_10468413 | F033383 | MWMHGEPLSSVGNGISMKAIVDLAPICDAFICMRKEEMSIWSSIKRTYLVPKGVDLEMYHPLPGVTERLSGEPVILYTENWRGQRNPLYLCVAMLEVVKKFPNARLHLFNCPKGPMRETFEALIKHNKWWTFIRTLAGPVKDVNLLYNRGDIVVSGLFPLYARGIEALGAGKAFIGPGYREAGYPWTCNLDPHSMAEAIVSCWEGYSSIDYRKWAEERHDVAETVRQSIDVYKRYLK |
| Ga0209518_1052164 | Ga0209518_10521646 | F057792 | MASARENHITSINSLLTKYNANLDRHGMYHIGDYKFDTRAVNIKIFSGKIKIKSVPMMKVTLESLERSLKIYAKDDENXCMKFY |
| Ga0209518_1052425 | Ga0209518_10524254 | F060838 | MSFQYIEPTDEQKIVMQNFRDKYSSLARSLETVPSSRGLSLALTKLEESAFWLNKAITKN |
| Ga0209518_1061807 | Ga0209518_10618071 | F001484 | DAWMHPAQQQAYEQIGQAVSIIQKQPKEEGLDMYFEKMQMAGAPVRTSFNWDTTRIDFVSKKVWGRGEILPLGFYKTDGRNFFELRGASGGIAAADIFYQVLGTQFFVNNPAACSYIDNLLVPTGY |
| Ga0209518_1064530 | Ga0209518_10645305 | F098345 | LSFSASKLNILYLGKEIVYTGTGHSLRHYRGEIINIAYYSDLDLVPYAEIKLKLWNSRTVTKILPLSDIILVSSLKKTKTKKSKVAA |
| Ga0209518_1067900 | Ga0209518_10679001 | F079599 | MGFETLKNIIDFNREQARLHPEDEELENDLCPFDAWTLVENERGYKS |
| Ga0209518_1067900 | Ga0209518_10679003 | F046735 | VNLNVFERLLIRNIVPQIQGWNYAHLKEARELIEGLFTETEETDLQFEQDGTQVKWKVAKEDGTPIPQERDIPVSDGLKAKIGKFLKQLDKEERLGFEHMTLYGKFVETK |
| Ga0209518_1080674 | Ga0209518_10806741 | F015419 | MKYELKITDETGKVKLYDISRSSSDEKKSLNDFILEALQISEDKRKLPFMIQCPNGLEVHPSIKMKFENYGLSILGDKLEAMIVTWRD |
| Ga0209518_1082171 | Ga0209518_10821713 | F020197 | MPEIPFKMDYVLSVTAKHMKKSIDISIKKTEARFHEFIADEEKSQEVFKTLLSLHTLRKQIDDFQHKHSTIKGK |
| Ga0209518_1109874 | Ga0209518_11098741 | F098345 | MQRPKNIKNLIHSASKLNILYLRKEIVYTGTGHSLRPYRGEIINIAYYSDLDPVPYAEIKLKIWNSRTVTKILPLSEIVLVSSLKKTKTKKSKLVA |
| Ga0209518_1117422 | Ga0209518_11174222 | F033485 | MHIIVKGKHDHFGKTRSEQEMNMRKEWGHTITDEQLDKLKYLERKIKDANGSKKNFIRGQDIDEIK |
| Ga0209518_1141844 | Ga0209518_11418442 | F103138 | MKGSILLNYDADVKLESQQEQNRFLRNLLDQMGVPIHEIWTSDGLLSIEQKIKLRQTLTTYNIQVIDDLDGHMQVYVENQLVGEWHKCTYKLKRDLRELDPKKQLFIEMQVNCWSLFEES |
| Ga0209518_1144982 | Ga0209518_11449821 | F008498 | LATVTYKNQPAIHKTRGAIPLAGNEHLYTVKKVLWPKSIETFLPKLFVGRTLHVCCGKSLIGDIRLDLDPENNPDIICDASNMKLVIKDDEFDTVLCDPPYNGKFQWNHDLISELARVASKRIIFQHWFIPANKHGLYKKAQEKFHLTETYVWQGQAYFGRAQIISVFNVS |
| Ga0209518_1186376 | Ga0209518_11863761 | F050940 | DLERADLKGAKGMIKKMGVMVKNYYYKRFNAELKNNGYQFKIGLNKLRDDEIFASDDRVLCSYPGFHFASKSWCELNYPDRPLEALIYIPETAKINEPWAADGKASADMIEIISVINIATKEDLTEKFRKEG |
| Ga0209518_1188525 | Ga0209518_11885252 | F079599 | MGYETLKNIIDFNREQANLHQADEELENNMCPYDDWPLKENERGYRACEICGRLWLGSREVL |
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