Sample 3300025024

Overview

Basic Information
IMG/M Taxon OID	3300025024 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0067852 \| Gp0122838 \| Ga0208016
Sample Name	Marine viral communities from Cariaco Basin, Caribbean Sea - 28_WHOI_OMZ (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	31098605
Sequencing Scaffolds	17
Novel Protein Genes	18
Associated Families	18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria	1
unclassified Hyphomonas → Hyphomonas sp.	1
Not Available	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Epulopiscium → unclassified Epulopiscium → Epulopiscium sp. SCG-B10WGA-EpuloB	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Caribbean Sea: Cariaco Basin
Coordinates	Lat. (^o)	10.847	Long. (^o)	-65.114	Alt. (m)	N/A	Depth (m)	148
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F006469	Metagenome / Metatranscriptome	372	Y
F008339	Metagenome / Metatranscriptome	335	Y
F008850	Metagenome	327	Y
F008888	Metagenome / Metatranscriptome	326	Y
F015325	Metagenome / Metatranscriptome	255	Y
F018527	Metagenome	234	Y
F020384	Metagenome / Metatranscriptome	224	N
F024807	Metagenome	204	N
F027819	Metagenome	193	Y
F027867	Metagenome	193	N
F053539	Metagenome	141	Y
F057671	Metagenome / Metatranscriptome	136	Y
F065695	Metagenome	127	Y
F075462	Metagenome	119	Y
F080520	Metagenome	115	Y
F090503	Metagenome / Metatranscriptome	108	Y
F101007	Metagenome	102	N
F105082	Metagenome / Metatranscriptome	100	N

Family

Category

Number of Sequences

3D Structure?

F006469

Metagenome / Metatranscriptome

372

F008339

Metagenome / Metatranscriptome

335

F008850

Metagenome

327

F008888

Metagenome / Metatranscriptome

326

F015325

Metagenome / Metatranscriptome

255

F018527

Metagenome

234

F020384

Metagenome / Metatranscriptome

224

F024807

Metagenome

204

F027819

Metagenome

193

F027867

Metagenome

193

F053539

Metagenome

141

F057671

Metagenome / Metatranscriptome

136

F065695

Metagenome

127

F075462

Metagenome

119

F080520

Metagenome

115

F090503

Metagenome / Metatranscriptome

108

F101007

Metagenome

102

F105082

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208016_100928	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	3381	Open in IMG/M
Ga0208016_101491	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2241	Open in IMG/M
Ga0208016_101594	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2121	Open in IMG/M
Ga0208016_102494	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1435	Open in IMG/M
Ga0208016_103252	All Organisms → Viruses → Predicted Viral	1149	Open in IMG/M
Ga0208016_103402	All Organisms → cellular organisms → Bacteria	1100	Open in IMG/M
Ga0208016_103453	All Organisms → Viruses → Predicted Viral	1085	Open in IMG/M
Ga0208016_103756	unclassified Hyphomonas → Hyphomonas sp.	1011	Open in IMG/M
Ga0208016_104633	Not Available	824	Open in IMG/M
Ga0208016_105102	Not Available	749	Open in IMG/M
Ga0208016_105437	Not Available	701	Open in IMG/M
Ga0208016_105998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Epulopiscium → unclassified Epulopiscium → Epulopiscium sp. SCG-B10WGA-EpuloB	636	Open in IMG/M
Ga0208016_106357	Not Available	594	Open in IMG/M
Ga0208016_106441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	585	Open in IMG/M
Ga0208016_107097	Not Available	522	Open in IMG/M
Ga0208016_107191	Not Available	514	Open in IMG/M
Ga0208016_107259	Not Available	507	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0208016_100928

All Organisms → Viruses → unclassified viruses → Circular genetic element sp.

3381

Open in IMG/M

Ga0208016_101491

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium

2241

Open in IMG/M

Ga0208016_101594

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

2121

Open in IMG/M

Ga0208016_102494

All Organisms → Viruses → unclassified viruses → Circular genetic element sp.

1435

Open in IMG/M

Ga0208016_103252

All Organisms → Viruses → Predicted Viral

1149

Open in IMG/M

Ga0208016_103402

All Organisms → cellular organisms → Bacteria

1100

Open in IMG/M

Ga0208016_103453

All Organisms → Viruses → Predicted Viral

1085

Open in IMG/M

Ga0208016_103756

unclassified Hyphomonas → Hyphomonas sp.

1011

Open in IMG/M

Ga0208016_104633

Not Available

824

Open in IMG/M

Ga0208016_105102

Not Available

749

Open in IMG/M

Ga0208016_105437

Not Available

701

Open in IMG/M

Ga0208016_105998

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Epulopiscium → unclassified Epulopiscium → Epulopiscium sp. SCG-B10WGA-EpuloB

636

Open in IMG/M

Ga0208016_106357

Not Available

594

Open in IMG/M

Ga0208016_106441

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

585

Open in IMG/M

Ga0208016_107097

Not Available

522

Open in IMG/M

Ga0208016_107191

Not Available

514

Open in IMG/M

Ga0208016_107259

Not Available

507

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0208016_100928	Ga0208016_1009283	F027819	MSDPKYNFGSPSKMKGLLAGEKATLKFLDLPEKIDTEWGVKYTVSILLLSHPSYPSLSSNGMKMQWQTGASVMVNNLVPLLNKKDKEFLKDYSELTWELEAMDDGSIWLTNA
Ga0208016_101491	Ga0208016_1014913	F008850	MGVSKRARARFKIMSSSEKNAVKKAVKLLYDVELMGIKRMREIMRLAEK
Ga0208016_101594	Ga0208016_1015942	F075462	MFNPDYVTPLERERRLKAAQKETKVAKTISIPISYWALLDQIKTKLEKKNANETLKYCIEQIGIEEGLES
Ga0208016_102494	Ga0208016_1024944	F065695	MSFSGGGGSVGVTNHVHSNQVGEGGSLSVPNTLISDVNLNSWILAVG
Ga0208016_103252	Ga0208016_1032522	F020384	MDYKKSKYEISLRKLENILSEVLRSSGNSKQLDLDNRMRRAIRHIQIIKRTAPNNEDGDLAMVKAYQIYDRLQRLSNYPQYFADNTRYAPQRVVSDRFVGYNARPASIRWDAAAMMAVPMAGPDRNWWRPPPRPAPVKHFTQEELENEYPAFTVRKKRKDAT
Ga0208016_103252	Ga0208016_1032523	F024807	MTKRVMPFNLVYHDRDQQLTLALHDNPVTLTRDEADALAFHLDSFVSDMDSTRKPQPSAEGADIHAEAHGEMLMAQFDDDPNPYHGDYSED
Ga0208016_103402	Ga0208016_1034022	F101007	MSMIVRHPFRNFFSSPFDVDWSEAYKQSMIPEDGTIIVQREMVEKKYRVKHESDGTVKYIPITEEVVSESD
Ga0208016_103453	Ga0208016_1034533	F006469	MANIGQPPSKGSATAIGPDMNPPPYSEGEPKLKKYGPGKDGALGHTLHNGSIDSAIDAQVSKAGKEGFSKGGN
Ga0208016_103756	Ga0208016_1037562	F027867	MDLSKSKLVVVVPIVVSILAATFGSVKYIINLTETIEANKQQVAMLNKDIQIIFDKYAQDKEEFTREMFNANARITEVNAYFRALEEILRKTTDAVRDQEWNIKDLQREVLGD
Ga0208016_104633	Ga0208016_1046332	F090503	MAGIETKGTGRAATYPNARQAYKKGGRIKAAKGYNTGRENLLEEVGRIDAEKSNRNRRAEKKRVVSELNKGYRGGGVAKKGKGVAL
Ga0208016_105102	Ga0208016_1051021	F015325	MTNKIWFVIEKSNYGGTTCSYRIEKTANTVDQATKFKVHLDALNDSKNKSYFLASDIDTVMERVISLHNKSVEDGSYYEQHPEIEKPLILDNEVKEKDTSEEMPF
Ga0208016_105437	Ga0208016_1054373	F018527	MINIDKLIERNNKTSKKVNEKLEKLLSIETTTPEEYRDGLYEQIEKVVDQLSVLHRRGGYYEFKKSNNNK
Ga0208016_105998	Ga0208016_1059981	F008888	MSKEKQAPLGKSVKIGIPSQNLIIDPRGKTSIRGRDARIPSGDKVTVKGT
Ga0208016_106357	Ga0208016_1063572	F057671	MSITKKLDRIAFDVFEQTKTTMYDTIAKELEYSDLEDINDNELHEYVMNQVINRFIQK
Ga0208016_106441	Ga0208016_1064413	F053539	MKSLFKDGTMFMITYTPQTIGGEVNHDKKHITRRGKWDMKCKFNESYILYFDRDRGNYRYASNKLAPIHISVGLNKEEMKAIN
Ga0208016_107097	Ga0208016_1070971	F105082	MSLIIAIGNFIGTNQGAVNPPYGGEDIVTELGVQMVSELTSVDLITEQAP
Ga0208016_107191	Ga0208016_1071911	F080520	MTKKYKCTVVETYTKTIEIPNDVDIADVDISEVYDFSLPQDSEETVVEIRNDSVVDLIYKDEEFEESDND
Ga0208016_107259	Ga0208016_1072592	F008339	MVYLIIRKYQYKDTKPTYRVEKWSKTIKEANQFLSALSLLDDDEWTMFFIVPAQENPALILTEEVA

Scaffold ID

Protein ID

Family

Sequence

Ga0208016_100928

Ga0208016_1009283

F027819

MSDPKYNFGSPSKMKGLLAGEKATLKFLDLPEKIDTEWGVKYTVSILLLSHPSYPSLSSNGMKMQWQTGASVMVNNLVPLLNKKDKEFLKDYSELTWELEAMDDGSIWLTNA

Ga0208016_101491

Ga0208016_1014913

F008850

MGVSKRARARFKIMSSSEKNAVKKAVKLLYDVELMGIKRMREIMRLAEK

Ga0208016_101594

Ga0208016_1015942

F075462

MFNPDYVTPLERERRLKAAQKETKVAKTISIPISYWALLDQIKTKLEKKNANETLKYCIEQIGIEEGLES

Ga0208016_102494

Ga0208016_1024944

F065695

MSFSGGGGSVGVTNHVHSNQVGEGGSLSVPNTLISDVNLNSWILAVG

Ga0208016_103252

Ga0208016_1032522

F020384

MDYKKSKYEISLRKLENILSEVLRSSGNSKQLDLDNRMRRAIRHIQIIKRTAPNNEDGDLAMVKAYQIYDRLQRLSNYPQYFADNTRYAPQRVVSDRFVGYNARPASIRWDAAAMMAVPMAGPDRNWWRPPPRPAPVKHFTQEELENEYPAFTVRKKRKDAT

Ga0208016_103252

Ga0208016_1032523

F024807

MTKRVMPFNLVYHDRDQQLTLALHDNPVTLTRDEADALAFHLDSFVSDMDSTRKPQPSAEGADIHAEAHGEMLMAQFDDDPNPYHGDYSED

Ga0208016_103402

Ga0208016_1034022

F101007

MSMIVRHPFRNFFSSPFDVDWSEAYKQSMIPEDGTIIVQREMVEKKYRVKHESDGTVKYIPITEEVVSESD

Ga0208016_103453

Ga0208016_1034533

F006469

MANIGQPPSKGSATAIGPDMNPPPYSEGEPKLKKYGPGKDGALGHTLHNGSIDSAIDAQVSKAGKEGFSKGGN

Ga0208016_103756

Ga0208016_1037562

F027867

MDLSKSKLVVVVPIVVSILAATFGSVKYIINLTETIEANKQQVAMLNKDIQIIFDKYAQDKEEFTREMFNANARITEVNAYFRALEEILRKTTDAVRDQEWNIKDLQREVLGD

Ga0208016_104633

Ga0208016_1046332

F090503

MAGIETKGTGRAATYPNARQAYKKGGRIKAAKGYNTGRENLLEEVGRIDAEKSNRNRRAEKKRVVSELNKGYRGGGVAKKGKGVAL

Ga0208016_105102

Ga0208016_1051021

F015325

MTNKIWFVIEKSNYGGTTCSYRIEKTANTVDQATKFKVHLDALNDSKNKSYFLASDIDTVMERVISLHNKSVEDGSYYEQHPEIEKPLILDNEVKEKDTSEEMPF

Ga0208016_105437

Ga0208016_1054373

F018527

MINIDKLIERNNKTSKKVNEKLEKLLSIETTTPEEYRDGLYEQIEKVVDQLSVLHRRGGYYEFKKSNNNK

Ga0208016_105998

Ga0208016_1059981

F008888

MSKEKQAPLGKSVKIGIPSQNLIIDPRGKTSIRGRDARIPSGDKVTVKGT

Ga0208016_106357

Ga0208016_1063572

F057671

MSITKKLDRIAFDVFEQTKTTMYDTIAKELEYSDLEDINDNELHEYVMNQVINRFIQK

Ga0208016_106441

Ga0208016_1064413

F053539

MKSLFKDGTMFMITYTPQTIGGEVNHDKKHITRRGKWDMKCKFNESYILYFDRDRGNYRYASNKLAPIHISVGLNKEEMKAIN

Ga0208016_107097

Ga0208016_1070971

F105082

MSLIIAIGNFIGTNQGAVNPPYGGEDIVTELGVQMVSELTSVDLITEQAP

Ga0208016_107191

Ga0208016_1071911

F080520

MTKKYKCTVVETYTKTIEIPNDVDIADVDISEVYDFSLPQDSEETVVEIRNDSVVDLIYKDEEFEESDND

Ga0208016_107259

Ga0208016_1072592

F008339

MVYLIIRKYQYKDTKPTYRVEKWSKTIKEANQFLSALSLLDDDEWTMFFIVPAQENPALILTEEVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025024: Marine viral communities from Cariaco Basin, Caribbean Sea - 28_WHOI_OMZ (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences