NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105082

Metagenome / Metatranscriptome Family F105082

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105082
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 49 residues
Representative Sequence MSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP
Number of Associated Samples 87
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 17.00 %
% of genes near scaffold ends (potentially truncated) 25.00 %
% of genes from short scaffolds (< 2000 bps) 79.00 %
Associated GOLD sequencing projects 78
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (84.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(19.000 % of family members)
Environment Ontology (ENVO) Unclassified
(54.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(77.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 22.00%    β-sheet: 8.00%    Coil/Unstructured: 70.00%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF08291Peptidase_M15_3 2.00
PF00166Cpn10 2.00
PF00118Cpn60_TCP1 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0234Co-chaperonin GroES (HSP10)Posttranslational modification, protein turnover, chaperones [O] 2.00
COG0459Chaperonin GroEL (HSP60 family)Posttranslational modification, protein turnover, chaperones [O] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A84.00 %
All OrganismsrootAll Organisms16.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2100351011|ASMM170b_GJFD58A01BQ0L9Not Available514Open in IMG/M
3300000115|DelMOSum2011_c10133199Not Available760Open in IMG/M
3300000115|DelMOSum2011_c10148120Not Available700Open in IMG/M
3300000117|DelMOWin2010_c10026807Not Available2880Open in IMG/M
3300000928|OpTDRAFT_10253263Not Available587Open in IMG/M
3300001450|JGI24006J15134_10094470Not Available1086Open in IMG/M
3300001450|JGI24006J15134_10190048Not Available635Open in IMG/M
3300004448|Ga0065861_1064286All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1590Open in IMG/M
3300004460|Ga0066222_1133949Not Available1378Open in IMG/M
3300004829|Ga0068515_107566Not Available1375Open in IMG/M
3300005057|Ga0068511_1027829Not Available856Open in IMG/M
3300005057|Ga0068511_1103448Not Available510Open in IMG/M
3300005404|Ga0066856_10157782Not Available991Open in IMG/M
3300005512|Ga0074648_1002325Not Available17437Open in IMG/M
3300006637|Ga0075461_10032270All Organisms → Viruses1722Open in IMG/M
3300006726|Ga0098070_105050Not Available850Open in IMG/M
3300006735|Ga0098038_1060836Not Available1350Open in IMG/M
3300006735|Ga0098038_1068472Not Available1259Open in IMG/M
3300006753|Ga0098039_1146344Not Available808Open in IMG/M
3300006789|Ga0098054_1131336Not Available929Open in IMG/M
3300006810|Ga0070754_10243877All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16823Open in IMG/M
3300006900|Ga0066376_10143886Not Available1458Open in IMG/M
3300007151|Ga0101649_1101857Not Available515Open in IMG/M
3300007513|Ga0105019_1068835All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.2033Open in IMG/M
3300007514|Ga0105020_1070484All Organisms → Viruses → Predicted Viral2829Open in IMG/M
3300007539|Ga0099849_1182540Not Available797Open in IMG/M
3300007539|Ga0099849_1194760Not Available765Open in IMG/M
3300009001|Ga0102963_1149592Not Available942Open in IMG/M
3300009027|Ga0102957_1401670Not Available513Open in IMG/M
3300009033|Ga0102956_1137559Not Available794Open in IMG/M
3300009074|Ga0115549_1252345Not Available559Open in IMG/M
3300009077|Ga0115552_1043247All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2083Open in IMG/M
3300009149|Ga0114918_10039999All Organisms → Viruses → Predicted Viral3244Open in IMG/M
3300009149|Ga0114918_10276848Not Available945Open in IMG/M
3300009173|Ga0114996_10079792Not Available2832Open in IMG/M
3300009423|Ga0115548_1209091Not Available603Open in IMG/M
3300009481|Ga0114932_10515328Not Available703Open in IMG/M
3300009498|Ga0115568_10181763Not Available981Open in IMG/M
3300009593|Ga0115011_10128396Not Available1819Open in IMG/M
3300009593|Ga0115011_11120955Not Available673Open in IMG/M
3300009703|Ga0114933_10018247Not Available5538Open in IMG/M
3300009790|Ga0115012_10453179All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium994Open in IMG/M
3300010300|Ga0129351_1078757Not Available1333Open in IMG/M
3300010392|Ga0118731_103107499Not Available883Open in IMG/M
3300010430|Ga0118733_104840514Not Available714Open in IMG/M
3300011118|Ga0114922_10161881Not Available1897Open in IMG/M
3300011126|Ga0151654_1014654Not Available1761Open in IMG/M
3300011253|Ga0151671_1111561Not Available1345Open in IMG/M
3300011261|Ga0151661_1071644Not Available699Open in IMG/M
3300011261|Ga0151661_1071646Not Available608Open in IMG/M
3300012520|Ga0129344_1164638Not Available614Open in IMG/M
3300012919|Ga0160422_10043993All Organisms → Viruses → Predicted Viral2590Open in IMG/M
3300012920|Ga0160423_10234205Not Available1274Open in IMG/M
3300012953|Ga0163179_10268800Not Available1336Open in IMG/M
3300016733|Ga0182042_1150296Not Available558Open in IMG/M
3300017764|Ga0181385_1021233Not Available2077Open in IMG/M
3300017818|Ga0181565_10056852Not Available2817Open in IMG/M
3300017971|Ga0180438_11002240Not Available605Open in IMG/M
3300018410|Ga0181561_10010295Not Available7509Open in IMG/M
3300018417|Ga0181558_10006594Not Available10043Open in IMG/M
3300019742|Ga0193965_1039479Not Available816Open in IMG/M
3300020374|Ga0211477_10017792All Organisms → Viruses3249Open in IMG/M
3300020385|Ga0211677_10003643Not Available10115Open in IMG/M
3300020465|Ga0211640_10298024Not Available895Open in IMG/M
3300020595|Ga0206126_10496312Not Available526Open in IMG/M
3300021347|Ga0213862_10012546Not Available3259Open in IMG/M
3300021368|Ga0213860_10111341Not Available1199Open in IMG/M
3300021389|Ga0213868_10533513Not Available625Open in IMG/M
3300021958|Ga0222718_10157187Not Available1277Open in IMG/M
3300021960|Ga0222715_10113842All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium1729Open in IMG/M
3300021964|Ga0222719_10087776Not Available2292Open in IMG/M
3300021964|Ga0222719_10209179Not Available1327Open in IMG/M
3300022200|Ga0196901_1081295All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1155Open in IMG/M
3300022200|Ga0196901_1147688Not Available785Open in IMG/M
3300022308|Ga0224504_10388947Not Available580Open in IMG/M
3300022907|Ga0255775_1322498Not Available528Open in IMG/M
(restricted) 3300022938|Ga0233409_10074681Not Available1034Open in IMG/M
(restricted) 3300023089|Ga0233408_10090179Not Available628Open in IMG/M
3300024262|Ga0210003_1042967Not Available2382Open in IMG/M
3300024262|Ga0210003_1043213Not Available2372Open in IMG/M
(restricted) 3300024518|Ga0255048_10462472Not Available614Open in IMG/M
3300025024|Ga0208016_107097Not Available522Open in IMG/M
3300025071|Ga0207896_1021378All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1122Open in IMG/M
3300025120|Ga0209535_1072869Not Available1338Open in IMG/M
3300025594|Ga0209094_1066142Not Available889Open in IMG/M
3300025630|Ga0208004_1009294All Organisms → Viruses → Predicted Viral3335Open in IMG/M
3300025647|Ga0208160_1141267Not Available591Open in IMG/M
3300025652|Ga0208134_1132685Not Available648Open in IMG/M
3300025652|Ga0208134_1136424Not Available634Open in IMG/M
3300025666|Ga0209601_1133298Not Available707Open in IMG/M
3300025674|Ga0208162_1001025Not Available15067Open in IMG/M
3300025674|Ga0208162_1115256Not Available779Open in IMG/M
3300025803|Ga0208425_1117248Not Available611Open in IMG/M
3300025873|Ga0209757_10067290Not Available1068Open in IMG/M
3300027790|Ga0209273_10459413Not Available500Open in IMG/M
3300027844|Ga0209501_10170596All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1424Open in IMG/M
3300027906|Ga0209404_10197300Not Available1247Open in IMG/M
3300031804|Ga0310124_10611397Not Available627Open in IMG/M
3300032360|Ga0315334_10682760All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.888Open in IMG/M
3300032820|Ga0310342_100363911Not Available1561Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine19.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous14.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine6.00%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface5.00%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh5.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water4.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater3.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine3.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine3.00%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater3.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.00%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine3.00%
Marine WaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water2.00%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment2.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine2.00%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface2.00%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water2.00%
Freshwater Microbial MatEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat1.00%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater1.00%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater1.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.00%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater1.00%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater1.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine1.00%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.00%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater1.00%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine1.00%
Coastal Water And SedimentEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Coastal Water And Sediment1.00%
Marine WaterEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water1.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater1.00%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment1.00%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment1.00%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment1.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.00%
Cinachyra Sp. (Marine Sponge)Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Cinachyra Sp. (Marine Sponge)1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2100351011Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from medium methane PC12-240-170cmEnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300000928Marine plume microbial communities from the Columbia River - 25 PSUEnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004460Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004829Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVsEnvironmentalOpen in IMG/M
3300005057Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2umEnvironmentalOpen in IMG/M
3300005404Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205EnvironmentalOpen in IMG/M
3300005512Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_waterEnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006726Marine viral communities from Cariaco Basin, Caribbean Sea - 28_WHOI_OMZEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006753Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006900Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_AEnvironmentalOpen in IMG/M
3300007151Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Dobu 'control', cg6adcHost-AssociatedOpen in IMG/M
3300007513Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate bEnvironmentalOpen in IMG/M
3300007514Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate aEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009027Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MGEnvironmentalOpen in IMG/M
3300009033Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_D2_MGEnvironmentalOpen in IMG/M
3300009074Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430EnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009173Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134EnvironmentalOpen in IMG/M
3300009423Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423EnvironmentalOpen in IMG/M
3300009481Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaGEnvironmentalOpen in IMG/M
3300009498Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426EnvironmentalOpen in IMG/M
3300009593Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 MetagenomeEnvironmentalOpen in IMG/M
3300009703Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaGEnvironmentalOpen in IMG/M
3300009790Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 MetagenomeEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300010430Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samplesEnvironmentalOpen in IMG/M
3300011118Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaGEnvironmentalOpen in IMG/M
3300011126Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02EnvironmentalOpen in IMG/M
3300011253Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeateEnvironmentalOpen in IMG/M
3300011261Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_4, 0.02EnvironmentalOpen in IMG/M
3300012520Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012919Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaGEnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300012953Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 MetagenomeEnvironmentalOpen in IMG/M
3300016733Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011501AT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017764Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11EnvironmentalOpen in IMG/M
3300017818Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017971Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaGEnvironmentalOpen in IMG/M
3300018410Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011510BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018417Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019742Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_8_MGEnvironmentalOpen in IMG/M
3300020374Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)EnvironmentalOpen in IMG/M
3300020385Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)EnvironmentalOpen in IMG/M
3300020465Marine microbial communities from Tara Oceans - TARA_B100000579 (ERX556060-ERR598961)EnvironmentalOpen in IMG/M
3300020595Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1EnvironmentalOpen in IMG/M
3300021347Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266EnvironmentalOpen in IMG/M
3300021368Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550EnvironmentalOpen in IMG/M
3300021389Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022308Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_24EnvironmentalOpen in IMG/M
3300022907Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaGEnvironmentalOpen in IMG/M
3300022938 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_13_MGEnvironmentalOpen in IMG/M
3300023089 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_11_MGEnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300025024Marine viral communities from Cariaco Basin, Caribbean Sea - 28_WHOI_OMZ (SPAdes)EnvironmentalOpen in IMG/M
3300025071Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025594Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 (SPAdes)EnvironmentalOpen in IMG/M
3300025630Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025647Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025666Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426 (SPAdes)EnvironmentalOpen in IMG/M
3300025674Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025873Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300027790Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.1 (SPAdes)EnvironmentalOpen in IMG/M
3300027844Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)EnvironmentalOpen in IMG/M
3300027906Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300031804Marine microbial communities from Western Arctic Ocean, Canada - CB11b_AW_Bot5EnvironmentalOpen in IMG/M
3300032360Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915EnvironmentalOpen in IMG/M
3300032820Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MGEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
ASMM170b_081454502100351011Coastal Water And SedimentMPLIIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLITEQAP
DelMOSum2011_1013319923300000115MarineMSLIIAIGNFIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQXIITEQAP*
DelMOSum2011_1014812023300000115MarineMSLIIAIGNYIGTNQGSVNPPYGGEDIITQLGVQMVSETGSQDLITEQAP*
DelMOWin2010_1002680743300000117MarineMSLIIAIGNFIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQDIITEQAP*
OpTDRAFT_1025326313300000928Freshwater And MarineMSLYNIIGIYIGINELGSTPPFGGRDIVTETGLQMVTELTSEDLITEGT
JGI24006J15134_1009447023300001450MarineMPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLITEQAP*
JGI24006J15134_1019004823300001450MarineMPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVDEATSVDLITEQAP*
Ga0065861_106428673300004448MarineMPLIIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLKTEQAP*
Ga0066222_113394923300004460MarineMPLIIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLITEQAP*
Ga0068515_10756623300004829Marine WaterMSLIIAIGNYIGINQLGITPPYGGEDIITETGVQMVSETGSQDLITEQAP*
Ga0068511_102782923300005057Marine WaterMSLIIAIGNYIGINQLGITPPYGGEDIVTETGVQMVSETGSQDLITEQAP*
Ga0068511_110344813300005057Marine WaterMSLIIAIGNYIGINQLGITPPYGGEDIITETGIQMVSELTSEDIITEQAP*
Ga0066856_1015778213300005404MarineIGINELGITPPYGGEDIITELGVQMVSELTSVDLITEQAP*
Ga0074648_1002325163300005512Saline Water And SedimentMSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP*
Ga0075461_1003227033300006637AqueousMALINIIGNYIGINELGNTPPYGGRDIVTETGIQMVSELTSQDLITE*
Ga0098070_10505023300006726MarineMSLIIAIGNFIGTNQGAVNPPYGGEDIVTELGVQMVSELTSVDLITEQAP*
Ga0098038_106083643300006735MarineMSLIIAIGNFIGTNQGSVNPPYGGEDVVTEIGIQMVSELGSQDIITEQAP*
Ga0098038_106847223300006735MarineMPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVSEATSEDLITEQAP*
Ga0098039_114634423300006753MarineMSLIIAIGNFIGTNQGAVNPPYGGEDIVTELGVQMVSELTSVDIITEQAP*
Ga0098054_113133613300006789MarineMPNLIAIGNFIGINELGITPPYGGEDIITELGVQMVSEATSVDLITEQAP*
Ga0070754_1024387733300006810AqueousMSLIIAIGNFIGTNQGSVNPPYGGEDIISELGVQMVSETGSQDLITEQAP*
Ga0066376_1014388643300006900MarineMTLIIAIGNFIGTNQGSVNPPYGGEDIVTELGVQMVSELTSVDIITEQAP*
Ga0101649_110185723300007151Cinachyra Sp. (Marine Sponge)MSLIIAIGNYIGINQLGITPPYGGEDIVTENGVQMVSETGSQDLITEQAP*
Ga0105019_106883543300007513MarineNFIGTNQGAVNPPYGGEDIVTELGVQMVSELTSVDLITEQAP*
Ga0105020_107048423300007514MarineMPLIIGIGNWIGINELGITPPYGGEDIITELGVQMVSELTSIDIITEQAP*
Ga0099849_118254013300007539AqueousGNMSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMVTELTSQDIITEQAP*
Ga0099849_119476023300007539AqueousMSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMVSELGSQDIITEQAP*
Ga0102963_114959243300009001Pond WaterMSLIIAIGNFIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQ
Ga0102957_140167023300009027Pond WaterMSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELGSQDIITEQAP*
Ga0102956_113755923300009033SoilMSLIIAIGNYIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQDIITEQAP*
Ga0115549_125234523300009074Pelagic MarineMSLYNIIGIYIGINELGSTPPFGGRDIVTETGLQMVSELTSEDLITEGT*
Ga0115552_104324763300009077Pelagic MarineMSLIIAIGNFIGTNQGSVNPPYGGEDIVTEIGIQMVSELGSQDIITEQAP*
Ga0114918_1003999923300009149Deep SubsurfaceMALINIIGNYIGINELGNTPPYGGKDIITETGIQMVSELTSQDLITE*
Ga0114918_1027684823300009149Deep SubsurfaceMSLIIAIGNFIGTNQGSVNPPYGGEDIVTQLGVQMVSETGSQDLITEQAP*
Ga0114996_1007979293300009173MarineMPNLIAIANFIGVNELGITPPYGGEDIVTEIGIQVVSELTLVDIVTEQAP*
Ga0115548_120909123300009423Pelagic MarineIAIGNFIGTYQGSVNPPYGGEDVVTELGIQMVSELGSQDIITEQAP*
Ga0114932_1051532813300009481Deep SubsurfaceYQFKMPLLIAIGNWIGINELGITPPYGGEDIVTETGVQMVSEATSVDLITEQAP*
Ga0115568_1018176313300009498Pelagic MarineMSLIIAIGNFIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQDIITEQ
Ga0115011_1012839623300009593MarineMPLLIAIGNWIGINELGITPPYGGEDIVTETGVQMVSEATSVDLITEQAP*
Ga0115011_1112095523300009593MarineMPNLIANGIFIGINELGITPPYGGQDIITETGIQVVSELTLQDLITEQAP*
Ga0114933_1001824713300009703Deep SubsurfaceIAIGNWIGINELGITPPYGGEDIVTETGVQMVSEATSVDLITEQAP*
Ga0115012_1045317923300009790MarineMPNIIATGIFIGINELGITPPYGGYDIVTETGIQMVEQKTSQDLITEQAP*
Ga0129351_107875723300010300Freshwater To Marine Saline GradientMSLLIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP*
Ga0118731_10310749933300010392MarineMPLLIAIGNWIGINELGITPPYGGEDIVKELGVQMVNEATSVDLITEQAP*
Ga0118733_10484051423300010430Marine SedimentWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLITEQAP*
Ga0114922_1016188153300011118Deep SubsurfaceMSLIIAIGNYIGTNQGSVNPPYGGEDIVTQLGVQMVSETGSQDLITEQAP*
Ga0151654_101465463300011126MarineMSLIIAIGNYIGTNQGSVNPPYGGEDIITEIGVQMVTELGSQDLITEQAP*
Ga0151671_111156123300011253MarineMPFIIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLITEQAP*
Ga0151661_107164433300011261MarineGNKIRINEVGINPTYGGEVITTENGVQMFIETGSQDLITGQAP*
Ga0151661_107164623300011261MarineMSLIIAIGNYIGINQLGITPHYGGEDIVTETGVQIVSETGSQDLITEQAP*
Ga0129344_116463823300012520AqueousMSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP*
Ga0160422_1004399313300012919SeawaterMPLLIAIGNWIGINELGITPPYGGEDIITETGIQMVSELTSEDLITEQAP*
Ga0160423_1023420563300012920Surface SeawaterMSLIIAIGNYIGINQLGITPPYGGEDIITEAGVQMVSETGRQDLITEQAP*
Ga0163179_1026880023300012953SeawaterMPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVSEVTSEDLITEQAP*
Ga0182042_115029633300016733Salt MarshMALINIIGNYIGINELGNTPPYGGKDIITETGLQMVSELTSQDLITE
Ga0181385_102123333300017764SeawaterMPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVSEVTSEDLITEQAP
Ga0181565_1005685283300017818Salt MarshMSLIIAIGNFIGTNQGSVNPPYGGEDIISELGVQMVSETGSQDLITEQAP
Ga0180438_1100224023300017971Hypersaline Lake SedimentMSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP
Ga0181561_10010295193300018410Salt MarshMALINIIGNYIGINELGNTPPYGGKDIITETGLQMVSELTSQDLITEAP
Ga0181558_10006594263300018417Salt MarshMALINIIGNYIGINELGNTPPYGGKDIITETGLQMVSELTSQDLI
Ga0193965_103947923300019742Freshwater Microbial MatMSLIIAIGNYIGTNQGSVNPPYGGEDIITQLGVQMVSETGSQDLITEQAP
Ga0211477_1001779243300020374MarineMPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVSEATSEDLITEQAP
Ga0211677_1000364323300020385MarineMSLIIAIGNFIGTNQGSVNPPYGGEDVVTEIGIQMVSELGSQDIITEQAP
Ga0211640_1029802423300020465MarineMPNLIAIGNFIGINELGITPPYGGEDIITELGVQMVSEATSVDLITEQAP
Ga0206126_1049631223300020595SeawaterMSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELGSQDIITEQA
Ga0213862_1001254633300021347SeawaterMSLIIAIGNFIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQDIITEQAP
Ga0213860_1011134133300021368SeawaterMSLIIAIGNYIGINQLGITPPYGGEDIITETGVQMVSETGSQDLITEQAP
Ga0213868_1053351323300021389SeawaterNYIGINQLGITPPYGGEDIVTETGVQMVSETGSQDLITEQAP
Ga0222718_1015718743300021958Estuarine WaterMSLYNIIGIYIGINELGSTPPFGGKDIVTETGLQMVSELTSEDLITEGT
Ga0222715_1011384223300021960Estuarine WaterMALINIIGNYIGINEIGNTPPYGGRDIVTETGIQMVSELASQDLIIEAT
Ga0222719_1008777633300021964Estuarine WaterMALINIIGNYIGINELCNTPPYGGKDIITETGLQMVSELTSQDLITEAP
Ga0222719_1020917923300021964Estuarine WaterMSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELGSQDIITEQAP
Ga0196901_108129513300022200AqueousMSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMV
Ga0196901_114768823300022200AqueousMSLLIAIGNFIGTNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP
Ga0224504_1038894723300022308SedimentMSLIIAIGNYIGTNQGSVNPPYGGEDIITQLGVQMVSETGSKDLITEQAP
Ga0255775_132249813300022907Salt MarshIIGNYIGINELGNTPPYGGKDIITETGLQMVSELTSQDLITEAP
(restricted) Ga0233409_1007468123300022938SeawaterMSLIIAIGNYIGTNQGSVNPPYGGEDIVTQLGVQMVSETGSQDLITEQAP
(restricted) Ga0233408_1009017923300023089SeawaterMSLYNIIGIYIGINELGSTPPFGGRDIVTETGLQMVSELTSEDLITEGT
Ga0210003_104296723300024262Deep SubsurfaceMSLIIAIGNFIGTNQGSVNPPYGGEDIVTQLGVQMVSETGSQDLITEQAP
Ga0210003_104321323300024262Deep SubsurfaceMALINIIGNYIGINELGNTPPYGGKDIITETGIQMVSELTSQDLITE
(restricted) Ga0255048_1046247213300024518SeawaterAIGNYIGTNQGSVNPPYGGEDIVTQLGVQMVSETGSQDLITEQAP
Ga0208016_10709713300025024MarineMSLIIAIGNFIGTNQGAVNPPYGGEDIVTELGVQMVSELTSVDLITEQAP
Ga0207896_102137823300025071MarineMPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVDEATSVDLITEQAP
Ga0209535_107286923300025120MarineMPLLIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDLITEQAP
Ga0209094_106614223300025594Pelagic MarineMSLIIAIGNFIGTNQGSVNPPYGGEDIVTEIGIQMVSELGSQDIITEQAP
Ga0208004_100929443300025630AqueousMALINIIGNYIGINELGNTPPYGGRDIVTETGIQMVSELTSQDLITE
Ga0208160_114126723300025647AqueousMSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMVSELTSQDIITEQAP
Ga0208134_113268513300025652AqueousMSLIIAIGNFIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQDI
Ga0208134_113642413300025652AqueousMPLIIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVD
Ga0209601_113329813300025666Pelagic MarineNFIGTNQGSVNPPYGGEDIVTEIGIQMVSELGSQDIITEQAP
Ga0208162_1001025163300025674AqueousMSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMVSELGSQDIITEQAP
Ga0208162_111525613300025674AqueousGNMSLIIAIGNFISSNQGSVNPPYGGEDIVTELGIQMVTELTSQDIITEQAP
Ga0208425_111724823300025803AqueousMSLIIAIGNYIGTNQGSVNPPYGGEDVVTELGIQMVSELGSQDIITEQAP
Ga0209757_1006729033300025873MarineMSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGVQMVSELTSVDIITEQAP
Ga0209273_1045941313300027790Marine SedimentMPLIIAIGNWIGINELGITPPYGGEDIVTELGVQMVNEATSVDL
Ga0209501_1017059623300027844MarineMPNLIAIANFIGVNELGITPPYGGEDIVTEIGIQVVSELTLVDIVTEQAP
Ga0209404_1019730043300027906MarineMPLLIAIGNWIGINELGITPPYGGEDIVTETGVQMVSEATSVDLITEQAP
Ga0310124_1061139723300031804MarineMPNLIAIANFIGLNELGITPPYGGEDIVTEIGIQVVSELTLVDIVTEQAP
Ga0315334_1068276023300032360SeawaterSMSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGVQMVSELTSVDIITEQAP
Ga0310342_10036391113300032820SeawaterMSLIIAIGNFIGTNQGSVNPPYGGEDIVTELGVQMVSELTSVDIITEQ


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