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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025010 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053054 | Gp0054404 | Ga0209319 |
| Sample Name | Groundwater microbial communities from Rifle, Colorado - Groundwater E2 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 285899075 |
| Sequencing Scaffolds | 25 |
| Novel Protein Genes | 25 |
| Associated Families | 12 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctsUY14 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus infantis | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Omnitrophica bacterium RBG_13_46_9 | 1 |
| Not Available | 15 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 3 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Lewinellaceae → Lewinella → unclassified Lewinella → Lewinella sp. IMCC34183 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Saccharicrinis → Saccharicrinis carchari | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → unclassified Prolixibacteraceae → Prolixibacteraceae bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Rifle, Colorado, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Rifle, Colorado, United States | |||||||
| Coordinates | Lat. (o) | 39.53 | Long. (o) | -107.78 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014212 | Metagenome | 265 | Y |
| F017253 | Metagenome | 242 | Y |
| F021450 | Metagenome | 219 | N |
| F048726 | Metagenome / Metatranscriptome | 147 | Y |
| F057792 | Metagenome | 135 | Y |
| F065191 | Metagenome | 128 | Y |
| F066627 | Metagenome | 126 | N |
| F071896 | Metagenome / Metatranscriptome | 121 | N |
| F081294 | Metagenome | 114 | Y |
| F084410 | Metagenome | 112 | Y |
| F091086 | Metagenome | 107 | Y |
| F098345 | Metagenome | 103 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0209319_1002502 | All Organisms → cellular organisms → Bacteria | 11441 | Open in IMG/M |
| Ga0209319_1004227 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctsUY14 | 6785 | Open in IMG/M |
| Ga0209319_1004658 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus infantis | 6198 | Open in IMG/M |
| Ga0209319_1005175 | All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Omnitrophica bacterium RBG_13_46_9 | 5647 | Open in IMG/M |
| Ga0209319_1005337 | Not Available | 5491 | Open in IMG/M |
| Ga0209319_1009569 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 3339 | Open in IMG/M |
| Ga0209319_1010604 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 3062 | Open in IMG/M |
| Ga0209319_1021864 | Not Available | 1715 | Open in IMG/M |
| Ga0209319_1022638 | Not Available | 1670 | Open in IMG/M |
| Ga0209319_1028084 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Lewinellaceae → Lewinella → unclassified Lewinella → Lewinella sp. IMCC34183 | 1414 | Open in IMG/M |
| Ga0209319_1030364 | Not Available | 1335 | Open in IMG/M |
| Ga0209319_1030676 | Not Available | 1325 | Open in IMG/M |
| Ga0209319_1031790 | Not Available | 1291 | Open in IMG/M |
| Ga0209319_1032205 | Not Available | 1279 | Open in IMG/M |
| Ga0209319_1035270 | Not Available | 1198 | Open in IMG/M |
| Ga0209319_1035400 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Saccharicrinis → Saccharicrinis carchari | 1195 | Open in IMG/M |
| Ga0209319_1038625 | Not Available | 1120 | Open in IMG/M |
| Ga0209319_1043768 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1020 | Open in IMG/M |
| Ga0209319_1044758 | Not Available | 1003 | Open in IMG/M |
| Ga0209319_1054005 | Not Available | 875 | Open in IMG/M |
| Ga0209319_1064012 | Not Available | 775 | Open in IMG/M |
| Ga0209319_1095023 | Not Available | 571 | Open in IMG/M |
| Ga0209319_1104401 | Not Available | 521 | Open in IMG/M |
| Ga0209319_1105378 | Not Available | 516 | Open in IMG/M |
| Ga0209319_1105426 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → unclassified Prolixibacteraceae → Prolixibacteraceae bacterium | 516 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0209319_1002502 | Ga0209319_100250211 | F071896 | MAKTTQSKNQSNDFNTIDPDTKVRIINNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFNSLAILNLKHEDIKLHSELKRMLANLEAEELKEEISKLPDGNKELLAELAIDEYSNLKGSVIDTIEDETKVKISLMKEDEKANKENQEKNKK |
| Ga0209319_1004227 | Ga0209319_10042273 | F071896 | MAKTTKSNEFNTIDPDIKVRIINNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFDSLGILNLKHEDIKLHSELKRMLASLDAEELKEEIANLPDGNKELLAELAITDYDNLRGSVINTIEDETKVKISLMKEDEKANKQNQEKNK |
| Ga0209319_1004658 | Ga0209319_100465816 | F098345 | MQKPKNIKNLSFPASKLNILYLGKEIVYTGTQIFNLISAYEIINIAYYSDLEPIPYAEIKLKIWNSRTVTKILPLSDVVLVSSDKVKKAKAKKSKLAA |
| Ga0209319_1005175 | Ga0209319_10051756 | F017253 | ANVGSYTQGRIAGDFLSSRKAARAERYPPETTAAALDG |
| Ga0209319_1005337 | Ga0209319_100533714 | F098345 | MQKPKNMKNLTHSASKLNILYLGKEIVYTGEGHSLKPYRGEIINIAYYSNLEPVPYAEIKLKIWNNRTVTKIMKLSDVVLVSSIKKSKKSRVAA |
| Ga0209319_1009569 | Ga0209319_10095694 | F084410 | LTQNLSLIYQIRDFGSRQILLPRQLYLSPGFAKIAPWWLARRDYFSAKVPGLVSAGCATNVYSLNRRAVIGNAFCDSMLCNLDSLN |
| Ga0209319_1010604 | Ga0209319_10106044 | F017253 | MAYNVGSYPQGRIAGDFLSSRKAAWAERYPPKTTATGLAGS |
| Ga0209319_1021864 | Ga0209319_10218643 | F048726 | TNFIGRSLTANIAEQNVELNMAFINLIVNDSANTITLSFDVASASAGGNLMVFKAGEQRTNISVPFKKLYYKADADTSAMRIEGLAKAPF |
| Ga0209319_1022638 | Ga0209319_10226382 | F048726 | MATNFIGRSLVANILEQNVTLDMSFINLIVNDSTSTVTLSFDVASANASNNLMVLKTGESRKNIAVPFGKLYYKAAADASYLRIEGLAKAEF |
| Ga0209319_1028084 | Ga0209319_10280841 | F017253 | MRLFKIGVNVGSYTQGRIAGDFLSSRKSARAERYTPKTTAAALDG |
| Ga0209319_1030364 | Ga0209319_10303641 | F098345 | MQRPSNTKNLSLSASILNSLYLGKTLIYNGSAHSLRPYKGNIINIAYYSNLEPIPYAEVRLKIWNNKTVTKILPLSDVVLIASSKTKS |
| Ga0209319_1030676 | Ga0209319_10306766 | F091086 | MQNIINTIKISNNPNEVKQILKPLKIKEVIKVAKCLDVCIRGNENKTEVIGNIILAIVKEXLLCK |
| Ga0209319_1031790 | Ga0209319_10317902 | F071896 | MAKTTQSKNQSNEFNTIDPDRKVRIINNSNSKIYWTQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKDVFDALGIISLKHEDIKLHSELKRMLANLDAEELKEEISKLPDGNKELLAELAIDEYSNLKGSVIDTIEDETKVK |
| Ga0209319_1032205 | Ga0209319_10322051 | F071896 | SNEFNTIDPDRKVRIINNSNSKIYWTQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKDIFDALGIINLKHEDIKLHSELKRMLANLDAEELKEEISKLPDGNKELLAELAIDEYSNLKGSVIDTIEDETKVKISLIKEDEKANKQNQEKNK |
| Ga0209319_1035270 | Ga0209319_10352702 | F014212 | MKIRLILAFLIISVSAGAQLIHVEGSKALGINYAYVKNGFNVSSRITFYKSGNLAYRGSIDFERVSFDLSKASIVYANPELMYTFYNPWDKLFLNVKGGILTGVEFISNSVLDDKKSQFFVGENIGLCAEYFISNKIMLNLDLDQRFFQLSKLGNASLIIKLGINYNF |
| Ga0209319_1035400 | Ga0209319_10354001 | F021450 | SIEMQAQVTNVLNNFYTVWVKPAIPIVAGLVLIVGALANMGKVLGESRDYKGFAQGIVLYLAVYLCLVGIVSYIMAG |
| Ga0209319_1038625 | Ga0209319_10386253 | F091086 | MQDIINTIKISNNPNEVKQILKSLKIKDVIKVAKCLGIFIRGNENKTEIINNIILGIAKG |
| Ga0209319_1043768 | Ga0209319_10437681 | F017253 | LNIGYNIKGYTQGRTAGGFLSSRKTARAERCPPKTTAAALDG |
| Ga0209319_1044758 | Ga0209319_10447582 | F081294 | MEDRKKFTYRYDDKTEKLLNEGLNMFNLSSLNKLIDKLIVDALVRFPQDQKEMNLEIKNLQESLKKCQVEKEQAEVHLNRLKAALKRDIENKEKINKLIQESTK |
| Ga0209319_1054005 | Ga0209319_10540052 | F098345 | MQRPKNIKNLTHSASKLNILYLGKEIVYIGEGHSLKPYRGEIINIAYYSDLDSVPYAEIKLKIWNNRTVTKILPLSDVV |
| Ga0209319_1064012 | Ga0209319_10640122 | F057792 | MASTARGLHISAINALLVKHGATLDKYGMYHIGNYKFDTRAVNLKIHHGKIKIKSVPMMKVTLESLERSLKIYVKESESXXFK |
| Ga0209319_1095023 | Ga0209319_10950232 | F048726 | NQAEQNVELNMGFINLIVNDSANIITVSFDIASASAANNLMILKAGESRQNIAVPFKKLYYKATADTSAMRIEGLTKAPF |
| Ga0209319_1104401 | Ga0209319_11044011 | F065191 | MYKFGIFLLMPEVVFQYQDKTKHVEKGVLSCLKRFRDEYSGQDRIVLSDSCDFKVFCHFIDFLVSGHIPSDRNDQIGVINLLRVWESHFGILECFSIFIINI |
| Ga0209319_1105378 | Ga0209319_11053781 | F066627 | YHMISESMMGLLSQTSYSITTLTVVLTDNFSEMTDGERLLNMNQAIKELRENLGVINSAIIEVEILDNQRMQLRTLNYINSIFK |
| Ga0209319_1105426 | Ga0209319_11054262 | F017253 | VSKSGVWLAPNVGSYTQGRIAGDFLSNLNAARAERCPPKTTVAALD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |