3300025007: Groundwater microbial communities from aquifer - Crystal Geyser CG15_big_fil_post_rev_8/21/14_0.20 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025007
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111384 | Gp0110940 | Ga0210038
• Sample Name: Groundwater microbial communities from aquifer - Crystal Geyser CG15_big_fil_post_rev_8/21/14_0.20 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 356611405
• Sequencing Scaffolds: 27
• Novel Protein Genes: 40
• Associated Families: 34

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_22	1
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Gallionellales bacterium RBG_16_57_15	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	5
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → Viruses → environmental samples → uncultured archaeal virus	1
Not Available	12

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → aquifer → groundwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: Utah: Grand County
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000449	Metagenome / Metatranscriptome	1126	Y
F001911	Metagenome / Metatranscriptome	618	Y
F002651	Metagenome	539	Y
F003014	Metagenome	513	Y
F006336	Metagenome / Metatranscriptome	375	Y
F007959	Metagenome / Metatranscriptome	341	Y
F012423	Metagenome / Metatranscriptome	280	Y
F016112	Metagenome / Metatranscriptome	249	N
F016358	Metagenome	247	Y
F016496	Metagenome / Metatranscriptome	246	N
F017787	Metagenome	238	Y
F019951	Metagenome / Metatranscriptome	226	N
F021923	Metagenome / Metatranscriptome	216	N
F026802	Metagenome / Metatranscriptome	196	N
F039475	Metagenome / Metatranscriptome	163	N
F050143	Metagenome / Metatranscriptome	145	N
F054576	Metagenome / Metatranscriptome	139	N
F055778	Metagenome / Metatranscriptome	138	Y
F060596	Metagenome / Metatranscriptome	132	N
F062438	Metagenome / Metatranscriptome	130	N
F068436	Metagenome / Metatranscriptome	124	Y
F068439	Metagenome / Metatranscriptome	124	N
F073076	Metagenome / Metatranscriptome	120	N
F075683	Metagenome	118	N
F076873	Metagenome / Metatranscriptome	117	Y
F079604	Metagenome / Metatranscriptome	115	N
F083827	Metagenome / Metatranscriptome	112	Y
F093254	Metagenome	106	Y
F093503	Metagenome	106	Y
F094905	Metagenome	105	N
F094906	Metagenome	105	N
F096615	Metagenome / Metatranscriptome	104	N
F102531	Metagenome	101	N
F104464	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0210038_1002233	All Organisms → cellular organisms → Bacteria	8544
Ga0210038_1010846	All Organisms → Viruses → Predicted Viral	3006
Ga0210038_1012478	All Organisms → cellular organisms → Bacteria → Proteobacteria	2754
Ga0210038_1026728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_22	1667
Ga0210038_1037063	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1338
Ga0210038_1038383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Gallionellales bacterium RBG_16_57_15	1307
Ga0210038_1040001	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis	1271
Ga0210038_1045756	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	1161
Ga0210038_1046856	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1142
Ga0210038_1056621	All Organisms → Viruses → Predicted Viral	1004
Ga0210038_1057638	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	992
Ga0210038_1066553	All Organisms → Viruses → environmental samples → uncultured archaeal virus	900
Ga0210038_1078705	Not Available	804
Ga0210038_1080830	Not Available	790
Ga0210038_1088275	Not Available	745
Ga0210038_1088984	Not Available	741
Ga0210038_1089016	Not Available	741
Ga0210038_1098489	Not Available	693
Ga0210038_1102214	Not Available	677
Ga0210038_1104539	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	667
Ga0210038_1105343	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	664
Ga0210038_1115049	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	628
Ga0210038_1127564	Not Available	589
Ga0210038_1130149	Not Available	582
Ga0210038_1153880	Not Available	525
Ga0210038_1158716	Not Available	515
Ga0210038_1164810	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0210038_1002233	Ga0210038_10022334	F093503	MKKYKVKIKHTDKEEIIKADSELEARVKFCEQNNLNYRHLAGKLEITLNNKPLQNNL
Ga0210038_1010846	Ga0210038_10108465	F075683	MTHIYTANMQPATGWIDQCGEVEIRGGFGVGEMIRCVCCGKKRPAEDCVVQCYYDGMSVWCAEGKGCKSHAEIEQKRLIAHENRSRGQRARRAKERLLLAAVVPLD
Ga0210038_1012478	Ga0210038_10124783	F096615	MAGCFGNNPEDRARERELNNYLDSADRLDNNDERIKELARDKFNALPSFYSPKGEKYRYTFMDDAMGSLKQEELIAIARLLRDGEHLQAGKLLEASLMRVLVAEAEEEIEDEEYD
Ga0210038_1026728	Ga0210038_10267282	F054576	MEFQLGLPELIAFALANIGGGWALLRISFSQFEMRLDDRFKLLDKAVNDVKRIELEIVRADTRNAQTYVTQANHDKVLERIFNVLSSMEQKLDGKANAADCEAKLLRRMERK
Ga0210038_1033468	Ga0210038_10334685	F094905	MTTIYGYIAAAVLIISLGAGWAHEHDKRIVFKAQVEQAGKDAAKHTAEIDAKHREEMQNAEQNTIIATNSIADWYRAH
Ga0210038_1037063	Ga0210038_10370632	F021923	IKMNLTDFFNNYEFIKKLQNHLTVNKENLLNDFPNNNIEKSFNQLLLSPSNAYLAKEIIPQTFADMTWKFKLLEGQQTLTSPSPREFTLTYESQTSRSIFYYETPISGSCYVECNFVDVEPGTTNCIFLGNANNITSKTYLAIQTFPLSSFQGNKIGDGWVAIMEFNNSNIHNPNVLSWSYDIEPTGTFRLSKNTSTLKLHHNRTYSLGAKTTFIGEDLHAGFFSYAFASSKIKKTTFKNLSCGNY
Ga0210038_1038383	Ga0210038_10383833	F054576	MEFQLGLPELIAFVLANIGGGWALLRLSFAQFEQRIKDQFELLDKAVNDVKRIELEIVRADTRNAQTYVAKTSHDKVLERIFNVLSSMEQKLDGKANAADCEAKHLRHMERK
Ga0210038_1040001	Ga0210038_10400012	F055778	MLSSVDLPEPELPTIKTNSPCLIENETLSRALTLLSPCP
Ga0210038_1045756	Ga0210038_10457561	F007959	METVINFEKFKQEYKKDFDIPVLSAKEKDIYIYLFLSLRRKMSKGMFPELYNSEIMFSKSDLKALVLKNIVIFQNHKKGWIISMNPKYITKTTECSFCGAKFNEIVYFRRNSITCPGCGFRMHGLVTAKRVNDYSVAIANIEKVEAIPKVTTSVVKVPIEHVITDVPGNLKI
Ga0210038_1045756	Ga0210038_10457564	F060596	MENKEASVGAIPIPDENVAKKKMAKNRTMVLLDRKVVDRLCCCKRKIGNTYNSVISNLLDKYENGQ
Ga0210038_1046856	Ga0210038_10468562	F083827	MTGCQGSVGAVENGSVVFQGAVGAFVSVRSRGRFHRRWRTRIAKVTDDIGRFDDESR
Ga0210038_1056621	Ga0210038_10566212	F054576	MEFQLGLPEIIAFVLANIGGGWALLRISFAQFELRLDDRFELLDNAMADVKRIELEIVRADTRNAQTYVTQTSHDKVLERIFNVLSSMEQKLDGKADAADCDMKIMRIMERK
Ga0210038_1057638	Ga0210038_10576381	F001911	MKRPIEFEKFKQEYKKDFDIPVLSTKEKDIFMYLFLLLRRKMSKGIFPELYNSEIMFSKSDLKTLVLKNIVIFQNYKKGWIISMNPNCITKNAECSFCGAKFNEMVYFRQNSISCPGCGFRMHGLATAKRVNDYSVAITNIEKVEAIPKVTTSVVKVPIEHVITDVPGNLKVTDIVLAPTAMERTIQIANQEVIPFQTGKADKLNALSTLKSIENKKKEANALVVQDNILANFSPISINFLKEYFFIQHTFFSARKYINLKLTEISKDPRFIANASLKNNTLTEVKNACERLCESEEIRGITLTEE
Ga0210038_1066553	Ga0210038_10665532	F026802	MYYYVPFSRNLTQGNTEEIAAADPGHLVGVFLRFKSGVEGFHPLRGQISISNIGTTKEYLLKNGIYAIFQRGTDGFVLNDWYQPAFIPLDHDIRANHQVLLETFTWGANFISVRGHFVYS
Ga0210038_1066553	Ga0210038_10665533	F019951	ILFKAFQINVSANNVKCEANNKLHVQKGQTIILHAIQIAPGIDTADENVFIMLYRDQEQLAGEGIYHAIIDDYTHTIEFDADAVEGQTFVTKAWGPNARTIHGVYMYEITS
Ga0210038_1078705	Ga0210038_10787052	F054576	MEFQLGLIELIAFAVANIGGWWALLRISFTQFELRIKDQFKLLDKAVNDVKHIELEVVRADTRNAQTYVTQTNQDKALERIFNVLSSMEQKLDGKANAADCEAKLLRHMERK
Ga0210038_1080830	Ga0210038_10808301	F102531	AAMGITAGYFSDVIGSEQALQASAQQVQSVAQQGLTELSFASSILNLPNADNSAGWTLGTYGGQTNVIQPQKTVAGINQEIDKLVANGVDKLEAIRQVGSVSVPDYAATPEQIAQLQLADKARTADEILQCPYTWCRHNSTVSDAILESRGYQPYRAAMMMQTTEGLSAGGHQVSAIIVNGEPVFIDLTNNLIIPGQQALEQILLNSGKQLTALEMIRLTTNNVWDVINLIPK
Ga0210038_1083882	Ga0210038_10838821	F094905	MTTLYGYIAAIVLIVFLGAGWAHEHDKRIVFEAQVEQAGKDAAKHTAEIDAKHLEEMKNAEQNTIIATNSIADWYRAHPAVRVRYANADCSAV
Ga0210038_1085889	Ga0210038_10858891	F073076	MVVLPMQSGVRTIEKIPKISLVSTIDQQEGFFYDVWKNPEKYGYTKLKMTWQECDGYTKEDMRKKKIEIGTRAFASQYECEAQSTTSSFFTHSIIEGSIRNCDYKHGITIGGIDLAKKKDYASISVVEKRDNNFNLIVNFQTQLNYTDLARISKQYEKEYLTTSFLVDTTTGEEFVDFASKEPYLVSLKPFAFTLNSKKQILDYLRIVMEQKRLVIPERFQELISDMRRYQYSDHLPDSISSLALSLWNEKAL
Ga0210038_1088275	Ga0210038_10882752	F068439	MKSENESVDTKSTRDKKKICEACQKRETEENDSIIKNVEEIEIYDIKKTGKNYSYRIFFCTIENECFFEYYSYNDIKRFNKERTVFLSLLTDKNKKKVYDFERKMHEKYPEYLYKMKNKKVTYPEYKNIKEYRISENYTVLFFTIGQHAIFQYFEDDGLIVYNEVDRSCVLHWLSGEETERLFNFEDEIKEEYAKYIF
Ga0210038_1088984	Ga0210038_10889842	F093254	MSDTTTSYRKMKAELRERTEGDFTLLSQDEADALSLARWREYSDWAKQEPIVESAVPEILYDAIHGDGTAASCSYETLRRAALAYLAAGTRNDWSCP
Ga0210038_1089016	Ga0210038_10890161	F039475	RMEKLNVLIYTKDEDYNPLGSVQLELFQLDDAGNETYIGKSISGDDGRLEVSKTALGGEGARIRVRNAKRLSGEDIVQTSDGIYSTFIVSSDETVQEVEIVFQIKKKHNISINVTWK
Ga0210038_1089016	Ga0210038_10890162	F012423	MVVTKYKGDNCVIAIGISNDADSTAQNYGLSLCLKDEDGDEYTLTMTGLVGTLLAGGFKKITDTDKIVKNKFYFEKGTTYNYNITATFPEMKEGKVYGQLGIYDGTDEDSAWKAGTTYDH
Ga0210038_1091879	Ga0210038_10918792	F079604	MTKARRGITLIKNRKKFKLDTFLQDIRKSPVAFTEICQYQGRQVQKFKQTKRILRLISENNKSIAVLPRGASKSFSLAIIALWYFYTCENFRVAIFSRSHRQSKAVLEICSDIIDSSPLLKTSRQSFQIDQKQRLKSHINSEIIAHPFDASTVLGEHPDIVL
Ga0210038_1095751	Ga0210038_10957511	F094906	LSFNTNKSVTKIEVNWFRADGWNFSKYKNTSGTSHILPIKYLKPNTFTYFVIKAYTATENVQSAQYSVAVSNGDSKVYDVYINVSGSSVRLSWRYFVANPQSNFESWYRKNGGSWYSRSITRIGQKYYWTNYADIGWQAGDQMDIQIFNPADRSETNIEDTILYGNIYF
Ga0210038_1098489	Ga0210038_10984891	F017787	EKIIREGEYSLTKKKYTLGVRAKFDVKFEYFEVTKYPNFKDECVYLSRKFFFLKNIITDDEKKEIEKFENEILNKFYYTK
Ga0210038_1098489	Ga0210038_10984892	F068436	MENKKKNAENAWEKGIVNEIYEEIEKKNREYEKRMNLIEAILN
Ga0210038_1100788	Ga0210038_11007882	F079604	MTARRGITFSKNRRKFKLDTFLQDIRKSPIAFMEICRYQGKQIQKFKQTKRILRLISENNKSIAVLPRGASKSFSLAIIAIWYFYTHENFRVAIFSRSHRQSKAVLEICSDIIDSSPLLKTSRQSFQIDQKQRLKSHINSEIIAHPFDASTVLGEHPDIV
Ga0210038_1102214	Ga0210038_11022142	F050143	MTETDVKDAMVRGISNAGAAHTFGVNYPRQDPIQSAISAIQKGIWEKNFRDSIGKWEKKLALVTIEEWKAATIAAASMYAEKASTIGAEEWGKYYDKAKSVIESAATEYVKSDKKKENMIKFWTDMQKLKNL
Ga0210038_1104539	Ga0210038_11045391	F000449	MKNKKEGGEDTPSPDLDQEFELRTSAPQEEMERYYARKKASLERKLRRLNKKIKKNIYNP
Ga0210038_1105343	Ga0210038_11053432	F076873	MEKWKKFTVENKKDFILPRNLSPREKDIFMYIFRLLREKVNRGRYPELYNDEIIYSKSDVKNLILKEIVIFKQYKKGWIITIHPTHITKNVECPWCGARFNEKIYFRQKRMRCPSCMWGMNGSTVAEKFEEINDVSNSNITENSTKTEKVTTDIKLAPTSIERTMQIARQKIIPFQTSKADVLNAISALN
Ga0210038_1115049	Ga0210038_11150492	F002651	MKNIEASVGAVPTQKKKEKVEGEGKKYIRKENEVIFCLEE
Ga0210038_1127564	Ga0210038_11275641	F006336	DISVNFIREYFFMYNHTIFSTMKYMNIGLREIRKDPRFIANPSLKNTVLSEVKTACDELLRACRPLQQPNEYVTNEYVTNEYVTALKLL
Ga0210038_1130149	Ga0210038_11301491	F003014	MKPPHNGGRGTTKNLYQREKEGTMPRRGSKQPYKPKVEYKYTIKDIAELAGMTRNALSVAKVHEKIEPGDFKNVVSFLTRRIIDNRLTGDLFTPTGGKAKRMKGSKSRAHVSGKKPKR
Ga0210038_1146178	Ga0210038_11461781	F062438	SEIIAHPFDASTVLGEHPDIILADECAFFGDDSFFRMVVLPMQSGVRTIEKIPKISLVSTIDQDEGFFYDVWKNPDKYGYTKLKMTWQECDGYTKEDMKNKKIEIGTRAFASQYECEAQSTTSSFFTHSIIEGCIRGCDYLNGITIGGIDLAKKKDYASISVVEKRDNNFNLIVNFQTQL
Ga0210038_1146386	Ga0210038_11463861	F104464	MAKIILLIEGEVKDGEELKALNKAFNILTTLFQVEIRNLAPREQKKXTNTEKATSSS
Ga0210038_1153880	Ga0210038_11538801	F016112	MWGSIEKVRNICGITKEQINDIVIHDMLEQTDRKVRDRVYIFRRLTMQIDKIGTNKIRFDVNKIGDGNMDTSIDYTDISIYRRNNGVYELFPIQKLDILSNEITFQTDIGENYDMIVEYFEDNFHFSIDTLSDASSLLAAAMCMRSLPLTSQTNNDAK
Ga0210038_1158716	Ga0210038_11587161	F096615	MAGCFGNNPEDRARERELNNYLDAAARLDNDDERIKELARDKFNALPNFYSPKDEKYRYTNMDDAMGSLKQEELIAIARLLRDGEHLQAGKLLEASLMRVLVAEAEEEIEDEE
Ga0210038_1159734	Ga0210038_11597341	F016358	FINMIQRTDSKNNIHANKSWAKQSPAMKYAALKTIISKSDIFVLPE
Ga0210038_1164810	Ga0210038_11648102	F016496	MEDKKKEDKYFFKKGNKYQQKGSAGLRYGGTTPVAKDKEKNLERLRCGWKPKTIVCKNITISDDEEAFANEFSAKVSEENDTYVDTVLIELAIAQILQVHRVYVYAKEKKISRDASRMIGTVLSTLREMNATKNARKEDNI