3300024996: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_solids_2 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300024996
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095090 | Ga0209916
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_solids_2 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 228434943
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.927
  • Long. (^o): 18.452665
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002483	Metagenome / Metatranscriptome	555	Y
F003627	Metagenome / Metatranscriptome	476	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209916_1000951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	33149
Ga0209916_1001286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	23547

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209916_1000951	Ga0209916_10009511	F003627	VDRETARRNMTAGLVAGGFAAVVFALCFIVALLYIAHG
Ga0209916_1001286	Ga0209916_100128622	F002483	PSPVKRTAPARRPPAYFTVAGIRLDLELERLRGLPAFADGPLTKRRPELKVRRASTRPNRVGFAVPAEHRLQVTAYPGIRPGDVLETLLHELVHLHVGRAREAHAWHGRTFKTTLARAMEEAYGVRGVGARSTLHGAYAEAIERLRAKPQLEMDLA