3300024988: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_inoc_plan (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300024988
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095076 | Ga0209958
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_inoc_plan (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 341047186
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Erythrobacter → unclassified Erythrobacter → Erythrobacter sp. SG61-1L	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces → Planctomyces sp.	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.936637
  • Long. (^o): 18.478905
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006009	Metagenome / Metatranscriptome	384	Y
F009854	Metagenome / Metatranscriptome	312	Y
F025775	Metagenome	200	Y
F050494	Metagenome / Metatranscriptome	145	Y
F065495	Metagenome / Metatranscriptome	127	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209958_1002413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	10545
Ga0209958_1015168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Erythrobacter → unclassified Erythrobacter → Erythrobacter sp. SG61-1L	2465
Ga0209958_1044278	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces → Planctomyces sp.	1169
Ga0209958_1064409	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	876
Ga0209958_1088043	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	683

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209958_1002413	Ga0209958_100241312	F025775	MKQFLTFQSFPMVVVVALIVWSWISILSVVIGSLF
Ga0209958_1015168	Ga0209958_10151682	F006009	MDTEPKMIWRGVAAGTVMGLGLGGILALFIALRPEMFAGLAG
Ga0209958_1044278	Ga0209958_10442782	F009854	MNDRGARADVFTALQDLAEVIPEMRAGQLMAAVGELCADLHGRGLWDADDDEVLEAVWQFRRNYEAAAITN
Ga0209958_1064409	Ga0209958_10644092	F065495	MLHRLTVGHLDVAAVERRQTVPVKALEMDVVHRLLGELGEKDDDGDVTLGGCKVKFENGAVSCLWMGGRANRVAEEFALRMHRETGCVIADVGGYRVIEPDELTGLTGQASGSKPGAVRT
Ga0209958_1088043	Ga0209958_10880431	F050494	MSQRLTVHGRYVGRTFIPDGPLPDAEGAAELVITPTVPLSVGSIADAFGKATVLRSGDEILAQVRADRDEWDDR