3300024983: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_inoc_biof (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300024983
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095075 | Ga0207420
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_inoc_biof (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 225773098
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → unclassified Patulibacter → Patulibacter sp. SYSU D01012	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.936637
  • Long. (^o): 18.478905
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002483	Metagenome / Metatranscriptome	555	Y
F007832	Metagenome / Metatranscriptome	344	Y
F021102	Metagenome / Metatranscriptome	220	Y
F099558	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207420_1000358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia	51700
Ga0207420_1011744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → unclassified Patulibacter → Patulibacter sp. SYSU D01012	2917
Ga0207420_1029474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1221
Ga0207420_1040480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	844

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207420_1000358	Ga0207420_100035830	F099558	MTPSNTQLRTSFVPSIARRDRSVVSRLLSAILSQWPERTRGSPRLPNYLRRDIGLDPVDEGRRYWDHQ
Ga0207420_1011744	Ga0207420_10117442	F007832	VPFLADIFPGGGGPLADVFSIVIAIAMFAVLYWLISLIDRI
Ga0207420_1029474	Ga0207420_10294741	F002483	PARRRPPAYFLVAGIRLDQEMDRLRGLPAFAGGPLEKRPELKVRRASTRPNRVGFAVPTEHRLQVTSYPGIRPGDVLETLLHELVHLHVGRAREAHAWHGRTFKATLAQAMDEAYGVVGVPTRSTLHGAYAEAIERQRAQPQLELDLA
Ga0207420_1040480	Ga0207420_10404802	F021102	MRRESPVKRRNPSGKVVWVARYRGRDGRHHIAKPTWNKGKGTFDRKADAQRAIDEAYGVSDRPDTLGDYFSTWTERHPRSERTNATNEHRIGRLVDVEVEGIALKDWPLRELRRRHALVLVDHMLKTEGRATTGAVGILRSLSAMAEDAITDEVCDLNPFKGVRIRASDPRAQKRRRPIRVFSFEEMHRFAKGAGCNEP