3300024981: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_750_plan (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300024981
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095086 | Ga0209934
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_750_plan (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 280969762
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	4
Not Available	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.927
  • Long. (^o): 18.452665
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001866	Metagenome	624	Y
F025660	Metagenome / Metatranscriptome	200	Y
F027211	Metagenome / Metatranscriptome	195	Y
F055010	Metagenome / Metatranscriptome	139	N
F064866	Metagenome / Metatranscriptome	128	Y
F081545	Metagenome	114	Y
F087441	Metagenome	110	N
F094111	Metagenome	106	Y
F095751	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209934_1000292	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	120841
Ga0209934_1010015	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	2633
Ga0209934_1015471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1831
Ga0209934_1023933	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	1304
Ga0209934_1035152	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	981
Ga0209934_1047836	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	794
Ga0209934_1057073	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	708
Ga0209934_1070460	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	619
Ga0209934_1077202	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	585
Ga0209934_1079850	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	572
Ga0209934_1081571	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	564
Ga0209934_1086077	Not Available	545
Ga0209934_1091875	All Organisms → cellular organisms → Eukaryota → Opisthokonta	523

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209934_1000292	Ga0209934_100029282	F064866	MKAPYLCWLVSISALLYPYISSAQWDENNSLGRYSYPIFAVTGKQQFTGTAFFYRSGDTTFLVSNYHAIKGMSPLKKTITFNSDTLYLKYSVKDSGGSKVLPIDVSDAAIGETEIFSMVDRIDLLKIPMELPGDADIHFINDLVDPAYFNAVPEEVVVFGFPTGPGNIPPFYSQQQILAGQVNQQGFADYDASLKVNFPGSSDSARAILSGTARYYYFIKPYAAQGYSGAPVFGKFRTAEGQVIYRFSGVIFAGQPMTRQTWAIKGSVALQYLKGEL
Ga0209934_1010015	Ga0209934_10100152	F094111	VRKIVRKSFHFDFVVLTLSYNQPRFCLNTFWNSNVKTFANQSFVGIVPYGIFVNSNNSIYIANRETGQIHIWLNENHHNPTKTISSRLSYPLSLFVTTNDDIYVDNGKNGRVDKLIVENETWISVMNVTSACFGLFIDIFENLYCSIRDNHRVDKKWSNGTTTIVAGTGGYGSQSDMLWSPYGIFVDINLDLFPRL
Ga0209934_1015471	Ga0209934_10154711	F027211	MVRTYWFVPIFYEAIDILDLQPSARSDNVEACRPLGWCTTIVR
Ga0209934_1023933	Ga0209934_10239331	F094111	MFLRICIGLFIYQQQYLTSTTFSFNQPRFRINATWNLNATTFVNESFVGTSPRGIFVNSNNSIYILNKNTGQILIWLNENHLNPTKTVEGNLLEPLSLFVTTNGDIYVDNGYNNSRVDKWIRENEGWISVMNVTSYCLGLFVDIYENLYCSMVKNHRVDKKWSNGITTIVGGIGVQGSQSDMLNHPYGIFVDI
Ga0209934_1035152	Ga0209934_10351521	F081545	MNIDHQQLRSIIIKLESRLSDDDRERLHFYLGNDVPRKIRDDASLRGTLRLMDSLFDQDKINEQDFTFLIRAFEQIQCIDAVNLLKG
Ga0209934_1047836	Ga0209934_10478361	F025660	MFKLVALVSIVGVLCLFDISNGFLLSKKPKCPVKVWKGGKEFSGEKISVDKEFIPYLKSIAAVAKACKVRVHVVDSFKQLKSSTEYVLSSQMPLAIGRGIHFDLQDAKGSVVCNKLCMTSRSWKTLPEAACFIDNVQKKGVRFTEPNL
Ga0209934_1053256	Ga0209934_10532561	F095751	KVQYKEMSQAYSLKQYFDLFNSDARRAKIKNVYLNSEDDSVFDEFDEINNIKQGYYKLMSIKATKTVVYRKLTRMSHAQRAKIVLEFLTDLYIEVNADLHVGTLTSNWCRLVDEIRLVLGKIIPFYTPENSYLLNW
Ga0209934_1057073	Ga0209934_10570731	F094111	KCKSFFNEKLLNFNEKHFIYFSFSLSVRTILLLDNSPFNNFPICSFISPLLLLFLVLTLSYNQPRFCLNTTWNSIATTFTNQSFVSTQPRSIFVNSNNSIYILNRETGEIHIWLNENHPNPTKTIEGNLRYPFSLFVTTNGDIYVDNEHLGRVDKWIVENETWISVMNITSYCFGLFVDIYENLYCSMYDNHRVDKKWSNGTTTIVAGTGVGGSQSDMLNKPCGIFVDINLDLYA
Ga0209934_1070460	Ga0209934_10704602	F055010	HKIQSVFLVLADTFAILIVACYFGEYSFLLVAPDKDTQSPWPIIRGEHPATIFYDNKASVAYNIELDYVQLFHRPLTDFLTAICTLFATYTVFEITYGKLEMTLSFIDCLLRDNVHSSTRSPQVLELINELNSMKNM
Ga0209934_1077202	Ga0209934_10772021	F094111	FSYHENRFIYFVVLILSYNQPRFCLNTIWNSNVKTFADRNFLDTYMPYIFVNSNNSIYILNIQTREIYIWQNENDLNPTKTISGNLSNPFSLFVTTNGDIYVDNGWENGRVDKWIVENETWISVMNVTSTCYGLFMDIYGSLYCSMYYNHRVDKKWSNDTITIIAGTGFQGSASDMLNYPHAIFVDINLDLYVT
Ga0209934_1079850	Ga0209934_10798501	F094111	NILFDDIGFQRKIMKFTYRTRLLIDDIYLFIDKTNCFENMSTIKKSFSFEMFLWIWIGLFIQQQYFTFATFSFNQPRFRTNTTWNSNAITFTNRSFVGSYPSGIFVNSNNSIYISNRETGQIHIWQNKNDLNPTKTISGNLSYPQSIFVTTNGDIYVDNGNNDRVDKWIQENETWISVMNVSSYCDGLFV
Ga0209934_1081571	Ga0209934_10815711	F087441	MEPLAVYGKSLIESNTNLSRSLSISILDEKGNEIPFETNSDSIEFFIPRDPNLRIPPMILTNETFHSLNLTTDLPISIHFEIKANFSYRFVYKFDKQSIFTNSIQVNQSYFTFIIDNQRTIGHRTLIFGLEQENQEYEYRVYSSGCYYLNKENEWKGDRLRVGPKTNLSQTHVIQLI
Ga0209934_1086077	Ga0209934_10860771	F001866	MAIVSECLQPIVVGVGDDDTALVGDTYSLWVVELAWLIALRAEHEQERAIDQRQYLHSAVAAVRDDDSMSIMIDRNALREAELSRLRSFLTTDLEQEREIDRRQEHQSMALGIDDDACRSQCLEAR
Ga0209934_1091875	Ga0209934_10918751	F001866	MLVECNCMWPLDAAIERRDVMAFVSERLQSVVELVGNDDSALVGDAHSSRTLELAFLAELEQERAIDRRQYLHSVVASIRDDDSMSIIIDRNARWAMELARLRSLLVANAEQEREIDRRQEHQSIVVGVGDDDAMMMLVDRNTSRSVELEVS